AT1G07740

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013851
Physical Location & Seq
Reverse (-)
2397442 .. 2400508
3067 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07740.1

Sequence Viewer

Length: 1380 bp
ATGCGTAGAAGACTATCTTCCGTGCTAATCAACAATCAGTGCATCGCGTCCCAACGCCATTACCACACATCTCGACCTGAGAAACCCACAAAGAAAGCCAGCAGCCATGAACCAACTCACAAATTCACCAGGAAGCCATGGGAGGAAGTGCCATTTCTCACCGATCTCAAAGAAATCGAAGACCCAGAGGAAGCTCTTTCTCTCTTCCACCAATACCAGGAAATGGGTTTCCGACACGACTACCCATCTTACTCTTCTCTCATCTACAAGCTTGCAAAGTCCCGTAACTTCGACGCCGTCGACCAAATTCTCCGCCTTGTTCGCTATCGAAACGTCCGGTGCAGAGAATCCCTCTTCATGGGATTGATTCAGCATTACGGGAAAGCCGGTTCGGTCGACAAAGCCATCGATGTTTTCCACAAAATCACCTCCTTTGATTGTGTTCGCACGATTCAGTCTCTCAACACTCTCATCAACGTTCTGGTCGATAACGGCGAGTTGGAAAAGGCCAAAAGCTTTTTCGACGGGGCAAAGGATATGCGTTTGCGTCCCAATTCGGTGTCTTTCAATATTTTGATCAAAGGATTTCTTGATAAATGCGATTGGGAAGCTGCATGTAAGGTGTTCGACGAAATGCTTGAGATGGAGGTGCAACCGAGTGTTGTGACATACAATAGCCTGATTGGTTTCTTATGCCGAAATGACGATATGGGTAAGGCGAAGAGCTTGCTTGAAGATATGATTAAGAAAAGAATACGTCCGAATGCTGTGACATTTGGGTTGTTAATGAAAGGTTTATGTTGTAAGGGAGAGTACAATGAAGCAAAGAAGTTGATGTTCGATATGGAGTATCGTGGGTGTAAACCGGGTCTCGTTAACTACGGAATTTTGATGAGTGATCTTGGGAAGAGAGGGAGAATTGATGAGGCAAAGCTTCTACTCGGCGAGATGAAGAAAAGACGGATAAAACCAGATGTTGTGATCTATAACATTCTGGTAAACCATCTTTGCACTGAGTGTAGAGTCCCTGAGGCTTATAGAGTGCTGACGGAAATGCAGATGAAAGGGTGTAAACCAAATGCAGCTACATACCGTATGATGATTGATGGGTTTTGTCGTATCGAGGATTTTGATTCAGGGTTGAATGTTTTGAATGCAATGCTTGCAAGCAGACACTGTCCCACACCTGCAACGTTTGTATGTATGGTTGCTGGGCTGATTAAAGGCGGTAACTTGGACCATGCTTGCTTTGTGTTAGAGGTGATGGGAAAGAAAAACTTAAGTTTTGGGTCTGGTGCTTGGCAAAATCTACTTTCTGATCTCTGCATCAAGGATGGAGGAGTATATTGTGAGGCTTTGTCAGAAGTAATTTCCATCTAA

Protein Analysis

459

Amino Acids

52.29

Weight (kDa)

8.74

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 64 - 192 8.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 152 - 196 2.6e-09 PPR repeat family
PPR_2 PF13041 184 - 228 3.6e-14 PPR repeat family
PPR_3 PF13812 207 - 264 1.4e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 216 - 247 3.8e-08 PPR repeat
PPR_2 PF13041 219 - 267 5.2e-16 PPR repeat family
PPR PF01535 222 - 252 1.1e-06 PPR repeat
PPR_3 PF13812 242 - 304 4.8e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 251 - 283 2.7e-06 PPR repeat
PPR_2 PF13041 289 - 327 5.2e-06 PPR repeat family
PPR_3 PF13812 313 - 369 7.4e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 321 - 353 9.8e-08 PPR repeat
PPR_2 PF13041 324 - 373 5e-18 PPR repeat family
PPR_1 PF12854 355 - 387 2.8e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013851)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07740
fragaria_vesca FvH4_3g34780
malus_domestica MD04G1036700.v1.1 MD11G1115700.v1.1 MD12G1096600.v1.1
prunus_persica Prupe.6G007300_v2.0.a1
pyrus_communis pycom03g08320
rosa_chinensis RchiOBHm_Chr5g0062521
rosa_laevigata RLG00000035563
rosa_multiflora Rmu_sc0004988.1_g000027
rosa_roxburghii Rroxscaffold_1G00018090
rosa_rugosa Rorug05G0350400
rosa_samantha Rh5AG410400 Rh5BG424400 Rh5CG448100 Rh5DG438700
rosa_wichuraiana Rw5G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1195
Acc36I ACCTGC 1 cut(s) 1195
AccB7I CCANNNNNTGG 1 cut(s) 223
AccI GTMKAC 2 cut(s) 300, 396
AccII CGCG 1 cut(s) 47
AciI CCGC 2 cut(s) 313, 1227
AclI AACGTT 2 cut(s) 477, 1193
AcsI RAATTY 3 cut(s) 122, 306, 885
AcyI GRCGYC 1 cut(s) 294
AdeI CACNNNGTG 1 cut(s) 1017
AfaI GTAC 1 cut(s) 815
AfiI CCNNNNNNNGG 3 cut(s) 217, 223, 358
AflII CTTAAG 1 cut(s) 1279
AgsI TTSAA 4 cut(s) 568, 734, 1144, 1153
AjnI CCWGG 2 cut(s) 128, 216
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AloI GAACNNNNNNTCC 2 cut(s) 373, 405
AluBI AGCT 7 cut(s) 194, 271, 516, 611, 726, 934, 1085
AluI AGCT 7 cut(s) 194, 271, 516, 611, 726, 934, 1085
Alw26I GTCTC 2 cut(s) 462, 875
AlwNI CAGNNNCTG 1 cut(s) 1176
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 3 cut(s) 102, 611, 1082
ApoI RAATTY 3 cut(s) 122, 306, 885
AspS9I GGNCC 1 cut(s) 1237
AsuC2I CCSGG 1 cut(s) 867
AsuHPI GGTGA 4 cut(s) 118, 151, 418, 1273
AvaII GGWCC 1 cut(s) 1237
AxyI CCTNAGG 1 cut(s) 1029
BbsI GAAGAC 2 cut(s) 16, 186
BbvI GCAGC 3 cut(s) 114, 598, 1094
BccI CCATC 7 cut(s) 253, 413, 637, 1011, 1100, 1258, 1328
BceAI ACGGC 2 cut(s) 281, 508
BcgI CGANNNNNNTGC 2 cut(s) 709, 743
BciT130I CCWGG 2 cut(s) 130, 218
BclI TGATCA 1 cut(s) 576
BcnI CCSGG 1 cut(s) 867
BcoDI GTCTC 2 cut(s) 462, 875
BfrI CTTAAG 1 cut(s) 1279
BfuAI ACCTGC 1 cut(s) 1195
BisI GCNGC 3 cut(s) 103, 612, 1083
BlsI GCNGC 3 cut(s) 104, 613, 1084
Bme1390I CCNGG 3 cut(s) 130, 218, 867
Bme18I GGWCC 1 cut(s) 1237
BmgT120I GGNCC 1 cut(s) 1237
BmrFI CCNGG 3 cut(s) 130, 218, 867
BmsI GCATC 2 cut(s) 51, 1335
BpiI GAAGAC 2 cut(s) 16, 186
BplI GAGNNNNNCTC 2 cut(s) 336, 368
BpuEI CTTGAG 1 cut(s) 659
BpuMI CCSGG 1 cut(s) 867
Bsa29I ATCGAT 1 cut(s) 408
BsaHI GRCGYC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 875
BsaJI CCNNGG 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 336
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 223, 358
Bse118I RCCGGY 1 cut(s) 386
Bse21I CCTNAGG 1 cut(s) 1029
Bse3DI GCAATG 1 cut(s) 1164
BseBI CCWGG 2 cut(s) 130, 218
BseCI ATCGAT 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 1339
BseLI CCNNNNNNNGG 3 cut(s) 217, 223, 358
BseMI GCAATG 1 cut(s) 1164
BseMII CTCAG 3 cut(s) 69, 1005, 1020
BseRI GAGGAG 1 cut(s) 1353
BseXI GCAGC 3 cut(s) 114, 598, 1094
BseYI CCCAGC 1 cut(s) 1211
BsgI GTGCAG 1 cut(s) 361
Bsh1236I CGCG 1 cut(s) 47
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 1 cut(s) 509
BshVI ATCGAT 1 cut(s) 408
BsiEI CGRYCG 1 cut(s) 396
BsiSI CCGG 3 cut(s) 337, 387, 866
BslFI GGGAC 5 cut(s) 34, 265, 534, 1010, 1164
BslI CCNNNNNNNGG 3 cut(s) 217, 223, 358
BsmAI GTCTC 2 cut(s) 462, 875
BsmFI GGGAC 5 cut(s) 34, 265, 534, 1010, 1164
BsmI GAATGC 2 cut(s) 769, 1159
BsnI GGCC 1 cut(s) 509
Bso31I GGTCTC 1 cut(s) 875
Bsp143I GATC 5 cut(s) 163, 576, 898, 981, 1318
Bsp19I CCATGG 1 cut(s) 137
BspACI CCGC 2 cut(s) 313, 1227
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 3 cut(s) 70, 1006, 1021
BspDI ATCGAT 1 cut(s) 408
BspFNI CGCG 1 cut(s) 47
BspMI ACCTGC 1 cut(s) 1195
BspQI GCTCTTC 1 cut(s) 716
BspTI CTTAAG 1 cut(s) 1279
BspTNI GGTCTC 1 cut(s) 875
BsrDI GCAATG 1 cut(s) 1164
BsrFI RCCGGY 1 cut(s) 386
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 5 cut(s) 163, 576, 898, 981, 1318
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 137
Bst2UI CCWGG 2 cut(s) 130, 218
Bst4CI ACNGT 2 cut(s) 1094, 1178
Bst6I CTCTTC 5 cut(s) 209, 259, 359, 716, 902
BstACI GRCGYC 1 cut(s) 294
BstAFI CTTAAG 1 cut(s) 1279
BstAPI GCANNNNNTGC 1 cut(s) 1163
BstC8I GCNNGC 6 cut(s) 100, 273, 728, 1164, 1168, 1246
BstDEI CTNAG 3 cut(s) 78, 1014, 1029
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 1339
BstFNI CGCG 1 cut(s) 47
BstKTI GATC 5 cut(s) 166, 579, 901, 984, 1321
BstMAI GTCTC 2 cut(s) 462, 875
BstMBI GATC 5 cut(s) 163, 576, 898, 981, 1318
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 2 cut(s) 321, 1163
BstNI CCWGG 2 cut(s) 130, 218
BstNSI RCATGY 1 cut(s) 618
BstSCI CCNGG 3 cut(s) 128, 216, 865
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 3 cut(s) 114, 598, 1094
BstV2I GAAGAC 2 cut(s) 16, 186
Bsu15I ATCGAT 1 cut(s) 408
Bsu36I CCTNAGG 1 cut(s) 1029
BsuRI GGCC 1 cut(s) 509
BsuTUI ATCGAT 1 cut(s) 408
BtgI CCRYGG 1 cut(s) 137
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 1 cut(s) 1339
BtsIMutI CAGTG 3 cut(s) 44, 1011, 1174
BveI ACCTGC 1 cut(s) 1195
Cac8I GCNNGC 6 cut(s) 100, 273, 728, 1164, 1168, 1246
CaiI CAGNNNCTG 1 cut(s) 1176
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 1237
ClaI ATCGAT 1 cut(s) 408
CseI GACGC 3 cut(s) 36, 302, 536
Csp6I GTAC 1 cut(s) 814
CviAII CATG 5 cut(s) 107, 138, 358, 615, 1241
CviQI GTAC 1 cut(s) 814
DdeI CTNAG 3 cut(s) 78, 1014, 1029
DpnI GATC 5 cut(s) 165, 578, 900, 983, 1320
DpnII GATC 5 cut(s) 163, 576, 898, 981, 1318
DraIII CACNNNGTG 1 cut(s) 1017
Eam1104I CTCTTC 5 cut(s) 209, 259, 359, 716, 902
EarI CTCTTC 5 cut(s) 209, 259, 359, 716, 902
EciI GGCGGA 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 875
Eco47I GGWCC 1 cut(s) 1237
Eco81I CCTNAGG 1 cut(s) 1029
EcoRII CCWGG 2 cut(s) 128, 216
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 5 cut(s) 110, 141, 361, 618, 1244
FalI AAGNNNNNCTT 5 cut(s) 33, 573, 605, 1262, 1294
FaqI GGGAC 5 cut(s) 34, 265, 534, 1010, 1164
FatI CATG 5 cut(s) 106, 137, 357, 614, 1240
FbaI TGATCA 1 cut(s) 576
FblI GTMKAC 2 cut(s) 300, 396
Fnu4HI GCNGC 3 cut(s) 103, 612, 1083
FokI GGATG 1 cut(s) 1346
Fsp4HI GCNGC 3 cut(s) 103, 612, 1083
GluI GCNGC 3 cut(s) 103, 612, 1083
GsaI CCCAGC 1 cut(s) 1215
HaeIII GGCC 1 cut(s) 509
HapII CCGG 3 cut(s) 337, 387, 866
HgaI GACGC 3 cut(s) 36, 302, 536
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 5 cut(s) 110, 141, 361, 618, 1244
HincII GTYRAC 3 cut(s) 301, 397, 877
HindII GTYRAC 3 cut(s) 301, 397, 877
HindIII AAGCTT 3 cut(s) 269, 514, 932
HinfI GANTC 5 cut(s) 347, 367, 451, 1023, 1133
HpaI GTTAAC 1 cut(s) 877
HpaII CCGG 3 cut(s) 337, 387, 866
HphI GGTGA 4 cut(s) 118, 151, 418, 1273
Hpy166II GTNNAC 6 cut(s) 301, 397, 863, 877, 1000, 1073
Hpy188I TCNGA 4 cut(s) 233, 762, 1318, 1363
Hpy188III TCNNGA 2 cut(s) 72, 590
Hpy8I GTNNAC 6 cut(s) 301, 397, 863, 877, 1000, 1073
Hpy99I CGWCG 4 cut(s) 296, 302, 527, 632
HpyCH4III ACNGT 2 cut(s) 1094, 1178
HpyCH4IV ACGT 4 cut(s) 333, 477, 757, 1193
HpyF10VI GCNNNNNNNGC 2 cut(s) 321, 1163
HpyF3I CTNAG 3 cut(s) 78, 1014, 1029
HpySE526I ACGT 4 cut(s) 333, 477, 757, 1193
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 5 cut(s) 110, 141, 361, 618, 1244
Ksp22I TGATCA 1 cut(s) 576
KspAI GTTAAC 1 cut(s) 877
Kzo9I GATC 5 cut(s) 163, 576, 898, 981, 1318
LguI GCTCTTC 1 cut(s) 716
Lsp1109I GCAGC 3 cut(s) 114, 598, 1094
LweI GCATC 2 cut(s) 51, 1335
MaeII ACGT 4 cut(s) 333, 477, 757, 1193
MaeIII GTNAC 4 cut(s) 284, 664, 769, 1229
MalI GATC 5 cut(s) 165, 578, 900, 983, 1320
MboI GATC 5 cut(s) 163, 576, 898, 981, 1318
MluCI AATT 6 cut(s) 122, 306, 553, 885, 918, 1368
MlyI GAGTC 1 cut(s) 1032
MmeI TCCRAC 2 cut(s) 256, 480
MseI TTAA 5 cut(s) 744, 785, 876, 1221, 1280
MspCI CTTAAG 1 cut(s) 1279
MspI CCGG 3 cut(s) 337, 387, 866
MspR9I CCNGG 3 cut(s) 130, 218, 867
Mva1269I GAATGC 2 cut(s) 769, 1159
MvaI CCWGG 2 cut(s) 130, 218
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 321, 1163
NciI CCSGG 1 cut(s) 867
NcoI CCATGG 1 cut(s) 137
NdeII GATC 5 cut(s) 163, 576, 898, 981, 1318
NlaIII CATG 5 cut(s) 110, 141, 361, 618, 1244
NmeAIII GCCGAG 1 cut(s) 921
NmuCI GTSAC 2 cut(s) 664, 769
NspI RCATGY 1 cut(s) 618
PaqCI CACCTGC 1 cut(s) 1195
PciSI GCTCTTC 1 cut(s) 716
PcsI WCGNNNNNNNCGW 3 cut(s) 297, 483, 492
PctI GAATGC 2 cut(s) 769, 1159
PfeI GAWTC 4 cut(s) 347, 367, 451, 1133
PflFI GACNNNGTC 2 cut(s) 296, 1176
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 3 cut(s) 104, 613, 1084
PleI GAGTC 1 cut(s) 1031
PpsI GAGTC 1 cut(s) 1031
Psp1406I AACGTT 2 cut(s) 477, 1193
Psp6I CCWGG 2 cut(s) 128, 216
PspFI CCCAGC 1 cut(s) 1211
PspGI CCWGG 2 cut(s) 128, 216
PspPI GGNCC 1 cut(s) 1237
PstNI CAGNNNCTG 1 cut(s) 1176
PsyI GACNNNGTC 2 cut(s) 296, 1176
RsaI GTAC 1 cut(s) 815
RsaNI GTAC 1 cut(s) 814
SalI GTCGAC 2 cut(s) 299, 395
SapI GCTCTTC 1 cut(s) 716
SaqAI TTAA 5 cut(s) 744, 785, 876, 1221, 1280
SatI GCNGC 3 cut(s) 103, 612, 1083
Sau3AI GATC 5 cut(s) 163, 576, 898, 981, 1318
Sau96I GGNCC 1 cut(s) 1237
SchI GAGTC 1 cut(s) 1032
ScrFI CCNGG 3 cut(s) 130, 218, 867
SfaNI GCATC 2 cut(s) 51, 1335
SinI GGWCC 1 cut(s) 1237
SmlI CTYRAG 2 cut(s) 638, 1279
SmoI CTYRAG 2 cut(s) 638, 1279
Sse9I AATT 6 cut(s) 122, 306, 553, 885, 918, 1368
SsiI CCGC 2 cut(s) 313, 1227
SspI AATATT 1 cut(s) 571
StyD4I CCNGG 3 cut(s) 128, 216, 865
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 1094, 1178
TaiI ACGT 4 cut(s) 336, 480, 760, 1196
TaqII GACCGA 1 cut(s) 382
TasI AATT 6 cut(s) 122, 306, 553, 885, 918, 1368
TatI WGTACW 1 cut(s) 813
TfiI GAWTC 4 cut(s) 347, 367, 451, 1133
Tru1I TTAA 5 cut(s) 744, 785, 876, 1221, 1280
Tru9I TTAA 5 cut(s) 744, 785, 876, 1221, 1280
TscAI CASTG 3 cut(s) 44, 1018, 1181
TseFI GTSAC 2 cut(s) 664, 769
TseI GCWGC 3 cut(s) 102, 611, 1082
Tsp45I GTSAC 2 cut(s) 664, 769
TspDTI ATGAA 6 cut(s) 123, 346, 803, 834, 965, 1076
TspGWI ACGGA 4 cut(s) 10, 897, 976, 1064
TspRI CASTG 3 cut(s) 44, 1018, 1181
Tth111I GACNNNGTC 2 cut(s) 296, 1176
Van91I CCANNNNNTGG 1 cut(s) 223
Vha464I CTTAAG 1 cut(s) 1279
VpaK11BI GGWCC 1 cut(s) 1237
XapI RAATTY 3 cut(s) 122, 306, 885
XceI RCATGY 1 cut(s) 618
XmiI GTMKAC 2 cut(s) 300, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.