Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004988.1

Orthogroup ID

OG0013851

Physical Location & Seq

Genomic Coordinates Reverse (-)

87771 .. 89258

Gene Structure 1488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004988.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

atggcgaaatgggtatataacaccgctgccatttcattccattcatctctacctggaaatcaaaattctttccttcccgcctccatgttcctttcaacagccaaagctttaaatcaagcacaatcaaaccttctcctccattggagcaatcgcacaaaactccaaccataccacactctccgtcgacccaacaaaccgaagaccaagcctcgccgcgaacggcctcacagagacgccgcaaggcctcgcaagcccatacctttcgtctccgatgtcaaagaagttcagggcccagaagatgccttgtctctctttcgagagtaccacgaaatgggcttcaaacacgactacccctcttactctgctctcatctataagctggctcgtaatcgaaacttcgaagccgttgaggccattcttggccatgtacgagacagaaacattcactgcaaagataccctttttattgctctaattcaacattatgggaaggccaagttggtagagaaagccattgagcttttccaccaaatcaattcttttaattgcgtccgtacattgcagtctttcaattcactgcttaatgtgcttgttgatagtgataggtttgccgatgccgatgagactttcggtcggtgtaatcaaatgggttttcggccgaattcgatttcgtataacataatgataaaggggtggctcaagaaaggtgaattggatgaagcacgcaaggtgttcgatgaaatgcttgagagaaaagtgcagcctagtgtggtgacgtataacagtctgatagggtttttcggtagaaagggtgagttggaggaagctactggtttgctcgaggatatgagacagaaagggaagtacccgaatgctgtaacatatgcattattgatggaaggtttgtgcatagtaggaaagtatgaggaagcaaagaagatgatgtttgatatggagtatcggggttgtaaaccacggcttgtgaattatggtgttttgataagtgatcttggaagaagagggaagattgaggcggcaaaatctttactgcaggaaatgaagaaaaggcggtttaagccagatgttgtgatttataacatattgattaattttctttgcaaggaaggtagggctatagaggcttataaagtcttgattgaaatgcaagttggaggtttcgagcctaatgcggccacatacaggatgatggttgatgggttttgtcagattaaagattttgagggagggctgaaggttttgattgccatgttgaaaagtaaacactgtcctcggttgaaaacatttgagtgcttggttacaggactattgaagtgtgggaatgttgatggtgcttgttttgtcttggaggagatggaaaacagaaatatgcaattatgttgtgaagcttgggaagcaccagttgttgatgcttgtggtaaggacattgttgcaggtgagaaaatgactgaagtcatagctgccgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent PPR PPR_2 PPR_3 Rad51

Protein Analysis

495

Amino Acids

56.49

Weight (kDa)

9.04

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07740
fragaria_vesca	FvH4_3g34780
malus_domestica	MD04G1036700.v1.1 MD11G1115700.v1.1 MD12G1096600.v1.1
prunus_persica	Prupe.6G007300_v2.0.a1
pyrus_communis	pycom03g08320
rosa_chinensis	RchiOBHm_Chr5g0062521
rosa_laevigata	RLG00000035563
rosa_multiflora	Rmu_sc0004988.1_g000027
rosa_roxburghii	Rroxscaffold_1G00018090
rosa_rugosa	Rorug05G0350400
rosa_samantha	Rh5AG410400 Rh5BG424400 Rh5CG448100 Rh5DG438700
rosa_wichuraiana	Rw5G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1095, 1146
AarI	CACCTGC	1 cut(s)	1442
Acc36I	ACCTGC	1 cut(s)	1442
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	184
AccII	CGCG	1 cut(s)	216
AciI	CCGC	7 cut(s)	24, 78, 214, 237, 1034, 1069, 1190
AcoI	YGGCCR	3 cut(s)	421, 656, 1191
AcsI	RAATTY	2 cut(s)	64, 661
AcuI	CTGAAG	2 cut(s)	1271, 1488
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	4 cut(s)	323, 429, 556, 866
AfiI	CCNNNNNNNGG	2 cut(s)	331, 1200
AgsI	TTSAA	8 cut(s)	96, 340, 479, 571, 1160, 1273, 1297, 1330
AhdI	GACNNNNNGTC	1 cut(s)	630
AjnI	CCWGG	1 cut(s)	52
AjuI	GAANNNNNNNTTGG	6 cut(s)	482, 514, 695, 727, 1152, 1184
AluBI	AGCT	6 cut(s)	107, 379, 520, 827, 1406, 1478
AluI	AGCT	6 cut(s)	107, 379, 520, 827, 1406, 1478
Alw26I	GTCTC	6 cut(s)	225, 271, 312, 426, 617, 844
Ama87I	CYCGRG	1 cut(s)	839
AoxI	GGCC	8 cut(s)	221, 242, 289, 411, 421, 492, 656, 1191
ApaI	GGGCCC	1 cut(s)	293
ApeKI	GCWGC	3 cut(s)	26, 760, 1478
ApoI	RAATTY	2 cut(s)	64, 661
AseI	ATTAAT	1 cut(s)	1107
AspS9I	GGNCC	2 cut(s)	289, 290
AsuHPI	GGTGA	4 cut(s)	719, 784, 824, 1466
AsuII	TTCGAA	1 cut(s)	399
AvaI	CYCGRG	1 cut(s)	839
BaeGI	GKGCMC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	3 cut(s)	13, 772, 1465
BccI	CCATC	5 cut(s)	889, 1201, 1208, 1340, 1366
BceAI	ACGGC	3 cut(s)	236, 389, 992
BcgI	CGANNNNNNTGC	4 cut(s)	715, 749, 1169, 1203
BciT130I	CCWGG	1 cut(s)	54
BcoDI	GTCTC	6 cut(s)	225, 271, 312, 426, 617, 844
BfaI	CTAG	1 cut(s)	765
BfmI	CTRYAG	2 cut(s)	1049, 1134
BfuAI	ACCTGC	1 cut(s)	1442
BglI	GCCNNNNNGGC	1 cut(s)	410
BisI	GCNGC	7 cut(s)	27, 214, 237, 761, 1035, 1191, 1479
BlsI	GCNGC	7 cut(s)	28, 215, 238, 762, 1036, 1192, 1480
Bme1390I	CCNGG	1 cut(s)	54
BmeRI	GACNNNNNGTC	1 cut(s)	630
BmeT110I	CYCGRG	1 cut(s)	839
BmgT120I	GGNCC	2 cut(s)	289, 290
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	3 cut(s)	289, 604, 1417
BoxI	GACNNNNGTC	1 cut(s)	1469
BpiI	GAAGAC	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	399
BpuEI	CTTGAG	2 cut(s)	683, 767
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	974, 1289
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 1200
Bse1I	ACTGG	2 cut(s)	835, 1418
Bse3DI	GCAATG	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	974, 1289
BseGI	GGATG	2 cut(s)	721, 1209
BseLI	CCNNNNNNNGG	2 cut(s)	331, 1200
BseMI	GCAATG	1 cut(s)	557
BseNI	ACTGG	2 cut(s)	835, 1418
BseRI	GAGGAG	2 cut(s)	125, 1382
BseSI	GKGCMC	1 cut(s)	293
BseX3I	CGGCCG	1 cut(s)	656
BseXI	GCAGC	3 cut(s)	13, 772, 1465
BsgI	GTGCAG	1 cut(s)	779
Bsh1236I	CGCG	1 cut(s)	216
Bsh1285I	CGRYCG	2 cut(s)	634, 659
BshFI	GGCC	8 cut(s)	223, 244, 291, 413, 423, 494, 658, 1193
BsiEI	CGRYCG	2 cut(s)	634, 659
BsiHKCI	CYCGRG	1 cut(s)	839
BslI	CCNNNNNNNGG	2 cut(s)	331, 1200
BsmAI	GTCTC	6 cut(s)	225, 271, 312, 426, 617, 844
BsmBI	CGTCTC	2 cut(s)	225, 271
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	8 cut(s)	223, 244, 291, 413, 423, 494, 658, 1193
BsoBI	CYCGRG	1 cut(s)	839
Bsp119I	TTCGAA	1 cut(s)	399
Bsp120I	GGGCCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	1 cut(s)	1006
BspACI	CCGC	7 cut(s)	24, 78, 214, 237, 1034, 1069, 1190
BspANI	GGCC	8 cut(s)	223, 244, 291, 413, 423, 494, 658, 1193
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	1053
BspMI	ACCTGC	1 cut(s)	1442
BspT104I	TTCGAA	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	835, 1418
BssECI	CCNNGG	2 cut(s)	974, 1289
BssMI	GATC	1 cut(s)	1006
BssNI	GRCGYC	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	785, 1286
Bst6I	CTCTTC	1 cut(s)	1012
BstACI	GRCGYC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	399
BstC8I	GCNNGC	3 cut(s)	251, 381, 724
BstDSI	CCRYGG	1 cut(s)	974
BstF5I	GGATG	2 cut(s)	721, 1209
BstFNI	CGCG	1 cut(s)	216
BstKTI	GATC	1 cut(s)	1009
BstMAI	GTCTC	6 cut(s)	225, 271, 312, 426, 617, 844
BstMBI	GATC	1 cut(s)	1006
BstMCI	CGRYCG	2 cut(s)	634, 659
BstMWI	GCNNNNNNNGC	6 cut(s)	250, 410, 586, 1075, 1139, 1412
BstNI	CCWGG	1 cut(s)	54
BstPAI	GACNNNNGTC	1 cut(s)	1469
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	2 cut(s)	1049, 1134
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	13, 772, 1465
BstV2I	GAAGAC	1 cut(s)	206
BstZI	CGGCCG	1 cut(s)	656
BsuRI	GGCC	8 cut(s)	223, 244, 291, 413, 423, 494, 658, 1193
BtgI	CCRYGG	1 cut(s)	974
BtsCI	GGATG	2 cut(s)	721, 1209
BtsI	GCAGTG	2 cut(s)	445, 575
BtsIMutI	CAGTG	3 cut(s)	445, 575, 1282
BveI	ACCTGC	1 cut(s)	1442
Cac8I	GCNNGC	3 cut(s)	251, 381, 724
Cfr13I	GGNCC	2 cut(s)	289, 290
CseI	GACGC	2 cut(s)	242, 538
Csp6I	GTAC	4 cut(s)	322, 428, 555, 865
CviAII	CATG	3 cut(s)	85, 425, 1267
CviQI	GTAC	4 cut(s)	322, 428, 555, 865
DpnI	GATC	1 cut(s)	1008
DpnII	GATC	1 cut(s)	1006
DraI	TTTAAA	1 cut(s)	111
DriI	GACNNNNNGTC	1 cut(s)	630
EaeI	YGGCCR	3 cut(s)	421, 656, 1191
EagI	CGGCCG	1 cut(s)	656
Eam1104I	CTCTTC	1 cut(s)	1012
Eam1105I	GACNNNNNGTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	1012
EclXI	CGGCCG	1 cut(s)	656
Eco147I	AGGCCT	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	293
Eco52I	CGGCCG	1 cut(s)	656
Eco57I	CTGAAG	2 cut(s)	1271, 1488
Eco88I	CYCGRG	1 cut(s)	839
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	661
EcoRII	CCWGG	1 cut(s)	52
EcoT22I	ATGCAT	1 cut(s)	889
EcoT38I	GRGCYC	1 cut(s)	293
Esp3I	CGTCTC	2 cut(s)	225, 271
FaeI	CATG	3 cut(s)	88, 428, 1270
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	3 cut(s)	84, 424, 1266
FauI	CCCGC	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	883
FblI	GTMKAC	1 cut(s)	184
Fnu4HI	GCNGC	7 cut(s)	27, 214, 237, 761, 1035, 1191, 1479
FokI	GGATG	2 cut(s)	728, 1216
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	7 cut(s)	27, 214, 237, 761, 1035, 1191, 1479
FspBI	CTAG	1 cut(s)	765
GluI	GCNGC	7 cut(s)	27, 214, 237, 761, 1035, 1191, 1479
HaeIII	GGCC	8 cut(s)	223, 244, 291, 413, 423, 494, 658, 1193
HgaI	GACGC	2 cut(s)	242, 538
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	88, 428, 1270
HincII	GTYRAC	1 cut(s)	185
HindII	GTYRAC	1 cut(s)	185
HindIII	AAGCTT	2 cut(s)	105, 1404
HphI	GGTGA	4 cut(s)	719, 784, 824, 1466
Hpy166II	GTNNAC	3 cut(s)	185, 971, 1280
Hpy188I	TCNGA	3 cut(s)	271, 789, 1227
Hpy188III	TCNNGA	3 cut(s)	317, 700, 1153
Hpy8I	GTNNAC	3 cut(s)	185, 971, 1280
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	6 cut(s)	83, 140, 484, 893, 1118, 1246
HpyCH4III	ACNGT	2 cut(s)	785, 1286
HpyCH4IV	ACGT	1 cut(s)	776
HpyF10VI	GCNNNNNNNGC	6 cut(s)	250, 410, 586, 1075, 1139, 1412
HpySE526I	ACGT	1 cut(s)	776
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	88, 428, 1270
Kzo9I	GATC	1 cut(s)	1006
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	3 cut(s)	13, 772, 1465
LweI	GCATC	3 cut(s)	289, 604, 1417
MaeI	CTAG	1 cut(s)	765
MaeII	ACGT	1 cut(s)	776
MaeIII	GTNAC	3 cut(s)	772, 877, 1315
MalI	GATC	1 cut(s)	1008
MboI	GATC	1 cut(s)	1006
MboII	GAAGA	7 cut(s)	211, 308, 949, 1026, 1029, 1036, 1072
MhlI	GDGCHC	1 cut(s)	293
MlsI	TGGCCA	1 cut(s)	423
MluNI	TGGCCA	1 cut(s)	423
MmeI	TCCRAC	3 cut(s)	187, 798, 1150
Mox20I	TGGCCA	1 cut(s)	423
Mph1103I	ATGCAT	1 cut(s)	889
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	6 cut(s)	110, 543, 582, 1074, 1107, 1230
MslI	CAYNNNNRTG	1 cut(s)	1306
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	6 cut(s)	250, 410, 586, 1075, 1139, 1412
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	1 cut(s)	1006
NlaIII	CATG	3 cut(s)	88, 428, 1270
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	772
NsiI	ATGCAT	1 cut(s)	889
NspV	TTCGAA	1 cut(s)	399
PaeR7I	CTCGAG	1 cut(s)	839
PaqCI	CACCTGC	1 cut(s)	1442
PceI	AGGCCT	1 cut(s)	244
PctI	GAATGC	1 cut(s)	877
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	7 cut(s)	28, 215, 238, 762, 1036, 1192, 1480
PshAI	GACNNNNGTC	1 cut(s)	1469
PshBI	ATTAAT	1 cut(s)	1107
PsiI	TTATAA	2 cut(s)	1095, 1146
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	291
PspOMI	GGGCCC	1 cut(s)	289
PspPI	GGNCC	2 cut(s)	289, 290
PspXI	VCTCGAGB	1 cut(s)	839
PstI	CTGCAG	1 cut(s)	1053
RsaI	GTAC	4 cut(s)	323, 429, 556, 866
RsaNI	GTAC	4 cut(s)	322, 428, 555, 865
RseI	CAYNNNNRTG	1 cut(s)	1306
SalI	GTCGAC	1 cut(s)	183
SaqAI	TTAA	6 cut(s)	110, 543, 582, 1074, 1107, 1230
SatI	GCNGC	7 cut(s)	27, 214, 237, 761, 1035, 1191, 1479
Sau3AI	GATC	1 cut(s)	1006
Sau96I	GGNCC	2 cut(s)	289, 290
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	293
SfaNI	GCATC	3 cut(s)	289, 604, 1417
SfcI	CTRYAG	2 cut(s)	1049, 1134
Sfr274I	CTCGAG	1 cut(s)	839
SfuI	TTCGAA	1 cut(s)	399
SlaI	CTCGAG	1 cut(s)	839
SmiMI	CAYNNNNRTG	1 cut(s)	1306
SmlI	CTYRAG	3 cut(s)	698, 746, 839
SmoI	CTYRAG	3 cut(s)	698, 746, 839
SseBI	AGGCCT	1 cut(s)	244
SsiI	CCGC	7 cut(s)	24, 78, 214, 237, 1034, 1069, 1190
SspMI	CTAG	1 cut(s)	765
StuI	AGGCCT	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	785, 1286
TaiI	ACGT	1 cut(s)	779
TaqI	TCGA	8 cut(s)	184, 316, 391, 399, 665, 735, 840, 1179
TaqII	GACCGA	1 cut(s)	620
TauI	GCSGC	4 cut(s)	216, 239, 1037, 1193
Tru1I	TTAA	6 cut(s)	110, 543, 582, 1074, 1107, 1230
Tru9I	TTAA	6 cut(s)	110, 543, 582, 1074, 1107, 1230
TscAI	CASTG	3 cut(s)	452, 582, 1289
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	3 cut(s)	26, 760, 1478
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	5 cut(s)	24, 33, 732, 753, 1073
TspGWI	ACGGA	2 cut(s)	170, 542
TspRI	CASTG	3 cut(s)	452, 582, 1289
Van91I	CCANNNNNTGG	1 cut(s)	331
VspI	ATTAAT	1 cut(s)	1107
XapI	RAATTY	2 cut(s)	64, 661
XhoI	CTCGAG	1 cut(s)	839
XmiI	GTMKAC	1 cut(s)	184
XspI	CTAG	1 cut(s)	765
Zsp2I	ATGCAT	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.