Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013851

Physical Location & Seq

Genomic Coordinates Forward (+)

15128975 .. 15129772

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1096600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCCTTCTTTTAACTGTGTCCGTACGTTGCAGTGCTTCAATGAACTCCTTAATGTGCTTGTTGATGGCGGTAGGTTTTCAGATGCGGATGAGATATTTGGGAGGTGTTCTACATTGGGTTTTCGTCCGAATTCGATTTCGTATAATATAATGATCAAGGGGTGGCTTCAGAAGGACGACTGGGAAGAAGCATGGAAGGTGTTTGATGAAATGCTTGAGAAAAAGGTGCAACCTAGTGTTGTGACGTATAATAGTCTTATAGGTTTTTTCGGTAGAACGGGTGAGTTGGAGAAAGCTACTGGTTTGTTTGAGGACATGAGACAGAAAGGGAAATACCCAAATGTGGTAACATATGCATTATTGATGGAAGGTTTGTGCTTGGCGGGGAAGCATAATGAAGCAAAGAAGATAATGTTTGATATGGAGTATCGAGGTTGTAAACCACGTCTTGTGAATTATGGTGTATTGATGAGTGATCTTGGAAAGAGAGGGAAAACTGAGGAGGCAAAGTCTTTCCTTCAGGAGATGAAGAAGAGGCGGTTTAAGCCGAATGTTGTGATTTATAACGTATTGATTAACTTTCTGTGCAAGGAAGGCAGGGCTGCAGAGGCTTACAAAGTCTTGGTTGAAATGCAAGTTGGAGGCTGTGAGCTGAATGCAGCTCCTTTCAGGATGATGGTTGATGGGTTTTTGCAGATTCACGGTGGGGGTGAAAATTTGAGAGAGAATCGACATAACTTTTCGTGTCGATTCCCACAGACGGCGCCAAATGTTGATGCACAAAATCGGAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent PPR PPR_2 PPR_3 Rad51

Protein Analysis

266

Amino Acids

30.32

Weight (kDa)

8.83

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	12 - 113	3.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	32 - 91	3.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	40 - 71	1.4e-06	PPR repeat
PPR_2	PF13041	43 - 87	6.7e-17	PPR repeat family
PPR	PF01535	46 - 75	1.4e-07	PPR repeat
PPR_1	PF12854	76 - 107	1.4e-07	PPR repeat
PPR_2	PF13041	78 - 126	3.6e-15	PPR repeat family
PPR	PF01535	81 - 110	3.2e-07	PPR repeat
PPR_3	PF13812	102 - 163	2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	110 - 142	3.5e-06	PPR repeat
PPR_2	PF13041	113 - 157	3.4e-07	PPR repeat family
PPR_2	PF13041	150 - 186	2.6e-06	PPR repeat family
PPR_1	PF12854	181 - 212	4.8e-11	PPR repeat
PPR_2	PF13041	183 - 230	4.9e-12	PPR repeat family
PPR	PF01535	186 - 216	8.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07740
fragaria_vesca	FvH4_3g34780
malus_domestica	MD04G1036700.v1.1 MD11G1115700.v1.1 MD12G1096600.v1.1
prunus_persica	Prupe.6G007300_v2.0.a1
pyrus_communis	pycom03g08320
rosa_chinensis	RchiOBHm_Chr5g0062521
rosa_laevigata	RLG00000035563
rosa_multiflora	Rmu_sc0004988.1_g000027
rosa_roxburghii	Rroxscaffold_1G00018090
rosa_rugosa	Rorug05G0350400
rosa_samantha	Rh5AG410400 Rh5BG424400 Rh5CG448100 Rh5DG438700
rosa_wichuraiana	Rw5G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
AccB1I	GGYRCC	1 cut(s)	763
AciI	CCGC	4 cut(s)	69, 86, 383, 538
AcsI	RAATTY	2 cut(s)	130, 715
AcuI	CTGAAG	2 cut(s)	152, 503
AcyI	GRCGYC	1 cut(s)	764
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	2 cut(s)	343, 760
AgsI	TTSAA	2 cut(s)	40, 629
AjiI	CACGTC	1 cut(s)	446
AjuI	GAANNNNNNNTTGG	2 cut(s)	621, 653
AluBI	AGCT	3 cut(s)	296, 652, 662
AluI	AGCT	3 cut(s)	296, 652, 662
Alw26I	GTCTC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	602, 659
ApoI	RAATTY	2 cut(s)	130, 715
AspLEI	GCGC	1 cut(s)	766
AsuHPI	GGTGA	2 cut(s)	293, 722
BanI	GGYRCC	1 cut(s)	763
BbvI	GCAGC	2 cut(s)	589, 671
BccI	CCATC	4 cut(s)	59, 358, 670, 677
BceAI	ACGGC	1 cut(s)	777
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	603
BfoI	RGCGCY	1 cut(s)	767
BisI	GCNGC	2 cut(s)	603, 660
BlsI	GCNGC	2 cut(s)	604, 661
BmgBI	CACGTC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	765
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	73, 766
BmuI	ACTGGG	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	764
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 760
Bse1I	ACTGG	2 cut(s)	185, 304
BseGI	GGATG	2 cut(s)	94, 678
BseLI	CCNNNNNNNGG	2 cut(s)	343, 760
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	2 cut(s)	185, 304
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	2 cut(s)	589, 671
BshNI	GGYRCC	1 cut(s)	763
BsiWI	CGTACG	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	343, 760
BsmAI	GTCTC	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	661
Bsp143I	GATC	2 cut(s)	153, 475
BspACI	CCGC	4 cut(s)	69, 86, 383, 538
BspCNI	CTCAG	1 cut(s)	490
BspLI	GGNNCC	1 cut(s)	765
BspMAI	CTGCAG	1 cut(s)	607
BspT107I	GGYRCC	1 cut(s)	763
BsrI	ACTGG	2 cut(s)	185, 304
BssMI	GATC	2 cut(s)	153, 475
BssNI	GRCGYC	1 cut(s)	764
Bst4CI	ACNGT	2 cut(s)	17, 704
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	1 cut(s)	764
BstDEI	CTNAG	2 cut(s)	498, 795
BstF5I	GGATG	2 cut(s)	94, 678
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	1 cut(s)	766
BstKTI	GATC	2 cut(s)	156, 478
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	2 cut(s)	153, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	544, 594, 608
BstSFI	CTRYAG	1 cut(s)	603
BstV1I	GCAGC	2 cut(s)	589, 671
BtrI	CACGTC	1 cut(s)	446
BtsCI	GGATG	2 cut(s)	94, 678
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	766
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	2 cut(s)	192, 316
CviJI	RGCY	8 cut(s)	166, 296, 547, 602, 611, 645, 652, 662
CviKI_1	RGCY	8 cut(s)	166, 296, 547, 602, 611, 645, 652, 662
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	2 cut(s)	498, 795
DinI	GGCGCC	1 cut(s)	765
DpnI	GATC	2 cut(s)	155, 477
DpnII	GATC	2 cut(s)	153, 475
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
Eco57I	CTGAAG	2 cut(s)	152, 503
EcoRI	GAATTC	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	358
EgeI	GGCGCC	1 cut(s)	765
EheI	GGCGCC	1 cut(s)	765
FaeI	CATG	2 cut(s)	195, 319
FatI	CATG	2 cut(s)	191, 315
FauI	CCCGC	1 cut(s)	376
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	603, 660
FokI	GGATG	2 cut(s)	101, 685
Fsp4HI	GCNGC	2 cut(s)	603, 660
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	765
GluI	GCNGC	2 cut(s)	603, 660
HaeII	RGCGCY	1 cut(s)	767
HhaI	GCGC	1 cut(s)	766
Hin1I	GRCGYC	1 cut(s)	764
Hin1II	CATG	2 cut(s)	195, 319
Hin6I	GCGC	1 cut(s)	764
HinP1I	GCGC	1 cut(s)	764
HinfI	GANTC	3 cut(s)	697, 727, 750
HphI	GGTGA	2 cut(s)	293, 722
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	4 cut(s)	82, 129, 171, 789
Hpy188III	TCNNGA	2 cut(s)	521, 670
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	6 cut(s)	15, 166, 190, 362, 527, 587
HpyCH4III	ACNGT	2 cut(s)	17, 704
HpyCH4IV	ACGT	4 cut(s)	26, 245, 445, 567
HpyCH4V	TGCA	9 cut(s)	31, 229, 356, 588, 605, 634, 659, 694, 779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	544, 594, 608
HpyF3I	CTNAG	2 cut(s)	498, 795
HpySE526I	ACGT	4 cut(s)	26, 245, 445, 567
Hsp92I	GRCGYC	1 cut(s)	764
Hsp92II	CATG	2 cut(s)	195, 319
HspAI	GCGC	1 cut(s)	764
KasI	GGCGCC	1 cut(s)	763
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	153, 475
LmnI	GCTCC	1 cut(s)	667
LpnPI	CCDG	5 cut(s)	166, 285, 506, 583, 655
Lsp1109I	GCAGC	2 cut(s)	589, 671
LweI	GCATC	2 cut(s)	73, 766
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	4 cut(s)	26, 245, 445, 567
MaeIII	GTNAC	2 cut(s)	241, 346
MalI	GATC	2 cut(s)	155, 477
MboI	GATC	2 cut(s)	153, 475
MboII	GAAGA	4 cut(s)	197, 418, 541, 544
MluCI	AATT	3 cut(s)	130, 454, 715
Mly113I	GGCGCC	1 cut(s)	764
MmeI	TCCRAC	2 cut(s)	267, 619
Mph1103I	ATGCAT	1 cut(s)	358
MseI	TTAA	4 cut(s)	12, 51, 543, 576
Mva1269I	GAATGC	1 cut(s)	661
MwoI	GCNNNNNNNGC	3 cut(s)	544, 594, 608
NarI	GGCGCC	1 cut(s)	764
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	2 cut(s)	153, 475
NlaIII	CATG	2 cut(s)	195, 319
NlaIV	GGNNCC	1 cut(s)	765
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	358
PctI	GAATGC	1 cut(s)	661
PfeI	GAWTC	3 cut(s)	697, 727, 750
Pfl23II	CGTACG	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	604, 661
PluTI	GGCGCC	1 cut(s)	767
PsiI	TTATAA	1 cut(s)	564
PspLI	CGTACG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	765
PstI	CTGCAG	1 cut(s)	607
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
SaqAI	TTAA	4 cut(s)	12, 51, 543, 576
SatI	GCNGC	2 cut(s)	603, 660
Sau3AI	GATC	2 cut(s)	153, 475
SfaNI	GCATC	2 cut(s)	73, 766
SfcI	CTRYAG	1 cut(s)	603
SfoI	GGCGCC	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	3 cut(s)	130, 454, 715
SsiI	CCGC	4 cut(s)	69, 86, 383, 538
SspDI	GGCGCC	1 cut(s)	763
SspMI	CTAG	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	17, 704
TaiI	ACGT	4 cut(s)	29, 248, 448, 570
TaqI	TCGA	4 cut(s)	134, 430, 730, 748
TasI	AATT	3 cut(s)	130, 454, 715
TfiI	GAWTC	3 cut(s)	697, 727, 750
Tru1I	TTAA	4 cut(s)	12, 51, 543, 576
Tru9I	TTAA	4 cut(s)	12, 51, 543, 576
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	602, 659
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	4 cut(s)	57, 222, 411, 542
TspGWI	ACGGA	1 cut(s)	11
TspRI	CASTG	1 cut(s)	38
XapI	RAATTY	2 cut(s)	130, 715
XspI	CTAG	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.