Rroxscaffold_1G00018090

Pentatricopeptide repeat-containing protein At1g07740

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
22232514 .. 22234274
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00018090.1

Sequence Viewer

Length: 1539 bp
ATGTTCCATTCAAGAGCCAAAGCTTTAAATCAAGCACAATCAAACCTTCTCCTCCATTGGAGCAATTGCACAAAACTCCAACCATACCACACTCTCCGTCGACCCAACAAACCGAAGACCAAACCTGGCCGCGAACGGCCTCACAGAGACGCCGCAAAGCCTCGCAAGCCCATACCTTTCGTCTCCGATGTCAAAGAAGTTGAGGGCCCAGAAGATGCCTTGTCTCTCTTCCGAGAGTACCACGAAATGGGCTTCAAACACGACTACCCCTCTTACTCTGCTCTCATCTATAAGCTGGCTCGTAATCGAAACTTCGAAGCCGTTGAGACCATTCTTGGCCATGTACGAGACAGAAACATTCACTGCAAAGATACCCTTTTCATTGCTCTAATTCAACATTATGGGAAGGCCAAGTTGGTAGAGAAAGCCATTGAGCTTTTCCACCAAATCAATTCTTTTAATTGCGTCCGTACATTGCAGTCTTTCAATTCACTACTTAATGTGCTTGTTGATAGTGATAGGTTTGCCGATGCCGATTCGATTTTCGGTCGGTGTAATCAAATGGGTTTTCGGCCGAATTCAATTTCGTATAACATAATGATAAAGGGGTGGCTCAAGAAAGGTGAATTGGATGAAGCACGCAAGGTGTTCGATGAAATGCTTGAGAGAAAAGTGCAGCCTAGTGTGGTGACGTATAACAGTCTGATAGGGTTTTTCGGTAGAAAGGGCGAGTTGGAGGAAGCTACTGGTTTGCTCGAGGATATGAGACAGAAGGGGAAGTACCCGAATGCTGTAACATATGCATTATTGATGGAAGGTTTGTGCATGGTAGGAAAGTATGAGGAAGCAAAGAAGATGATGTTTGATATGGAGTATCGGGGTTGCAAACCACGGCTTGTGAATTATGGTGTTTTGATAAGTGATCTTGGAAGAAGAGGGAAGATTGAGGCGGCAAAATCTTTACTGCAGGAAATGAAGAAAAGGCGGTTTAAGCCAGATGTTGTGATTTATAACATATTGATTAATTTTCTGTGCAAGGAAGGTAGGGCTATAGAGGCTTATAAAGTCTTGATTGAAATGCAAGTAGGAGGTTTCGAGCCTAATGCGGCCACATACAGGATGATGGTTGATGGGTTTTGTCAGATTGAAGATTTTGAGGGAGGGCTGAAGGTTTTGATTGCCATGTTGAAAAGTAAACACTGTCCTCGGTTGAAAACATTTGAGTGCTTGGTTACAGGACTATTGAAGTGCGGGAATGTTGATGGTGCTTGTTTTGTCTTGGAGGAGATGGAAAACAGAAATATGCAATTATGTTGCGAAGCTTGGGAAGCACCAGTTGTTGATGCTTGTGGTAAGGACATTGTTGCAGGTGAGATAATGACTGAAAGCAAAAGTAGTGCTTCTTCAGGTAATAGTAAGGAGAAGATAAGATTTGTTCTTTTTGTGGAGTCAGGTGTTAGACGCTCTTGTGAACTGAGCTATGCCGACTGGTATGGTTCAGGGGAAAGAGGAACTGAAAAAGCTTTGTTAAAGAACTAA

Protein Analysis

512

Amino Acids

58.4

Weight (kDa)

8.92

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 132 - 268 1.7e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 161 - 203 1.7e-06 PPR repeat family
PPR_3 PF13812 180 - 241 9.3e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 188 - 220 2.5e-09 PPR repeat
PPR_2 PF13041 192 - 236 4.4e-16 PPR repeat family
PPR PF01535 195 - 224 5.9e-08 PPR repeat
PPR_1 PF12854 225 - 256 3.8e-08 PPR repeat
PPR_2 PF13041 227 - 275 2.2e-14 PPR repeat family
PPR PF01535 230 - 259 1.1e-06 PPR repeat
PPR_3 PF13812 251 - 310 2.7e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 262 - 307 3e-07 PPR repeat family
PPR_2 PF13041 299 - 335 2.7e-06 PPR repeat family
PPR_long PF17177 309 - 437 2.2e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 320 - 375 4.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 330 - 361 3.4e-10 PPR repeat
PPR_2 PF13041 332 - 381 2.6e-16 PPR repeat family
PPR PF01535 335 - 364 8.7e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013851)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07740
fragaria_vesca FvH4_3g34780
malus_domestica MD04G1036700.v1.1 MD11G1115700.v1.1 MD12G1096600.v1.1
prunus_persica Prupe.6G007300_v2.0.a1
pyrus_communis pycom03g08320
rosa_chinensis RchiOBHm_Chr5g0062521
rosa_laevigata RLG00000035563
rosa_multiflora Rmu_sc0004988.1_g000027
rosa_roxburghii Rroxscaffold_1G00018090
rosa_rugosa Rorug05G0350400
rosa_samantha Rh5AG410400 Rh5BG424400 Rh5CG448100 Rh5DG438700
rosa_wichuraiana Rw5G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1011, 1062
AarI CACCTGC 1 cut(s) 1358
Acc36I ACCTGC 1 cut(s) 1358
AccB7I CCANNNNNTGG 1 cut(s) 247
AccI GTMKAC 1 cut(s) 100
AccII CGCG 1 cut(s) 132
AciI CCGC 6 cut(s) 130, 153, 950, 985, 1106, 1251
AcoI YGGCCR 4 cut(s) 127, 337, 572, 1107
AcsI RAATTY 1 cut(s) 577
AcuI CTGAAG 2 cut(s) 1187, 1389
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 4 cut(s) 239, 345, 472, 782
AfiI CCNNNNNNNGG 2 cut(s) 247, 1116
AjnI CCWGG 1 cut(s) 124
AjuI GAANNNNNNNTTGG 4 cut(s) 398, 430, 611, 643
AluBI AGCT 7 cut(s) 23, 295, 436, 743, 1322, 1479, 1523
AluI AGCT 7 cut(s) 23, 295, 436, 743, 1322, 1479, 1523
Alw26I GTCTC 6 cut(s) 141, 187, 228, 320, 342, 760
Ama87I CYCGRG 1 cut(s) 755
AoxI GGCC 7 cut(s) 127, 137, 205, 337, 408, 572, 1107
ApaI GGGCCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 676
ApoI RAATTY 1 cut(s) 577
AseI ATTAAT 1 cut(s) 1023
AspS9I GGNCC 2 cut(s) 205, 206
AsuHPI GGTGA 3 cut(s) 635, 700, 1382
AsuII TTCGAA 1 cut(s) 315
AvaI CYCGRG 1 cut(s) 755
BaeGI GKGCMC 1 cut(s) 209
BalI TGGCCA 1 cut(s) 339
BanII GRGCYC 1 cut(s) 209
BarI GAAGNNNNNNTAC 4 cut(s) 764, 796, 1387, 1419
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 688
BccI CCATC 5 cut(s) 805, 1117, 1124, 1256, 1282
BceAI ACGGC 3 cut(s) 152, 305, 908
BcgI CGANNNNNNTGC 4 cut(s) 631, 665, 1085, 1119
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 6 cut(s) 141, 187, 228, 320, 342, 760
BfaI CTAG 1 cut(s) 681
BfmI CTRYAG 2 cut(s) 965, 1050
BfuAI ACCTGC 1 cut(s) 1358
BisI GCNGC 5 cut(s) 130, 153, 677, 951, 1107
BlsI GCNGC 5 cut(s) 131, 154, 678, 952, 1108
Bme1390I CCNGG 1 cut(s) 126
BmeT110I CYCGRG 1 cut(s) 755
BmgT120I GGNCC 2 cut(s) 205, 206
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 3 cut(s) 205, 520, 1333
BpiI GAAGAC 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 315
BpuEI CTTGAG 2 cut(s) 599, 683
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 320
BsaJI CCNNGG 2 cut(s) 890, 1205
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 1116
Bse1I ACTGG 3 cut(s) 751, 1334, 1493
Bse3DI GCAATG 2 cut(s) 381, 473
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 890, 1205
BseGI GGATG 2 cut(s) 637, 1125
BseLI CCNNNNNNNGG 2 cut(s) 247, 1116
BseMI GCAATG 2 cut(s) 381, 473
BseMII CTCAG 1 cut(s) 1466
BseNI ACTGG 3 cut(s) 751, 1334, 1493
BseRI GAGGAG 2 cut(s) 41, 1298
BseSI GKGCMC 1 cut(s) 209
BseX3I CGGCCG 1 cut(s) 572
BseXI GCAGC 1 cut(s) 688
BsgI GTGCAG 1 cut(s) 695
Bsh1236I CGCG 1 cut(s) 132
Bsh1285I CGRYCG 2 cut(s) 550, 575
BshFI GGCC 7 cut(s) 129, 139, 207, 339, 410, 574, 1109
BsiEI CGRYCG 2 cut(s) 550, 575
BsiHKCI CYCGRG 1 cut(s) 755
BslI CCNNNNNNNGG 2 cut(s) 247, 1116
BsmAI GTCTC 6 cut(s) 141, 187, 228, 320, 342, 760
BsmBI CGTCTC 2 cut(s) 141, 187
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 7 cut(s) 129, 139, 207, 339, 410, 574, 1109
Bso31I GGTCTC 1 cut(s) 320
BsoBI CYCGRG 1 cut(s) 755
Bsp119I TTCGAA 1 cut(s) 315
Bsp120I GGGCCC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 1 cut(s) 922
BspACI CCGC 6 cut(s) 130, 153, 950, 985, 1106, 1251
BspANI GGCC 7 cut(s) 129, 139, 207, 339, 410, 574, 1109
BspCNI CTCAG 1 cut(s) 1467
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 207
BspMAI CTGCAG 1 cut(s) 969
BspMI ACCTGC 1 cut(s) 1358
BspT104I TTCGAA 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 320
BsrDI GCAATG 2 cut(s) 381, 473
BsrI ACTGG 3 cut(s) 751, 1334, 1493
BssECI CCNNGG 2 cut(s) 890, 1205
BssMI GATC 1 cut(s) 922
BssNI GRCGYC 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 701, 1202
Bst6I CTCTTC 2 cut(s) 233, 928
BstACI GRCGYC 1 cut(s) 150
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 3 cut(s) 167, 297, 640
BstDEI CTNAG 1 cut(s) 1475
BstDSI CCRYGG 1 cut(s) 890
BstF5I GGATG 2 cut(s) 637, 1125
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 1 cut(s) 925
BstMAI GTCTC 6 cut(s) 141, 187, 228, 320, 342, 760
BstMBI GATC 1 cut(s) 922
BstMCI CGRYCG 2 cut(s) 550, 575
BstMWI GCNNNNNNNGC 4 cut(s) 166, 991, 1055, 1328
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 2 cut(s) 965, 1050
BstSLI GKGCMC 1 cut(s) 209
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 688
BstV2I GAAGAC 1 cut(s) 122
BstZI CGGCCG 1 cut(s) 572
BsuRI GGCC 7 cut(s) 129, 139, 207, 339, 410, 574, 1109
BtgI CCRYGG 1 cut(s) 890
BtsCI GGATG 2 cut(s) 637, 1125
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 361, 1198
BveI ACCTGC 1 cut(s) 1358
Cac8I GCNNGC 3 cut(s) 167, 297, 640
Cfr13I GGNCC 2 cut(s) 205, 206
CseI GACGC 3 cut(s) 158, 454, 1470
Csp6I GTAC 4 cut(s) 238, 344, 471, 781
CviAII CATG 3 cut(s) 341, 826, 1183
CviQI GTAC 4 cut(s) 238, 344, 471, 781
DdeI CTNAG 1 cut(s) 1475
DpnI GATC 1 cut(s) 924
DpnII GATC 1 cut(s) 922
DraI TTTAAA 1 cut(s) 27
EaeI YGGCCR 4 cut(s) 127, 337, 572, 1107
EagI CGGCCG 1 cut(s) 572
Eam1104I CTCTTC 2 cut(s) 233, 928
EarI CTCTTC 2 cut(s) 233, 928
EclXI CGGCCG 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 320
Eco52I CGGCCG 1 cut(s) 572
Eco57I CTGAAG 2 cut(s) 1187, 1389
Eco88I CYCGRG 1 cut(s) 755
EcoO109I RGGNCCY 1 cut(s) 205
EcoRI GAATTC 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 124
EcoT22I ATGCAT 1 cut(s) 805
EcoT38I GRGCYC 1 cut(s) 209
Esp3I CGTCTC 2 cut(s) 141, 187
FaeI CATG 3 cut(s) 344, 829, 1186
FalI AAGNNNNNCTT 4 cut(s) 360, 392, 1384, 1416
FatI CATG 3 cut(s) 340, 825, 1182
FauI CCCGC 1 cut(s) 1244
FauNDI CATATG 1 cut(s) 799
FblI GTMKAC 1 cut(s) 100
Fnu4HI GCNGC 5 cut(s) 130, 153, 677, 951, 1107
FokI GGATG 2 cut(s) 644, 1132
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 5 cut(s) 130, 153, 677, 951, 1107
FspBI CTAG 1 cut(s) 681
GluI GCNGC 5 cut(s) 130, 153, 677, 951, 1107
HaeIII GGCC 7 cut(s) 129, 139, 207, 339, 410, 574, 1109
HgaI GACGC 3 cut(s) 158, 454, 1470
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 3 cut(s) 344, 829, 1186
HincII GTYRAC 1 cut(s) 101
HindII GTYRAC 1 cut(s) 101
HindIII AAGCTT 3 cut(s) 21, 1320, 1521
HinfI GANTC 2 cut(s) 536, 1448
HphI GGTGA 3 cut(s) 635, 700, 1382
Hpy166II GTNNAC 3 cut(s) 101, 1196, 1472
Hpy188I TCNGA 4 cut(s) 187, 233, 705, 1143
Hpy188III TCNNGA 3 cut(s) 12, 616, 1069
Hpy8I GTNNAC 3 cut(s) 101, 1196, 1472
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 6 cut(s) 56, 400, 766, 809, 1034, 1162
HpyCH4III ACNGT 2 cut(s) 701, 1202
HpyCH4IV ACGT 1 cut(s) 692
HpyF10VI GCNNNNNNNGC 4 cut(s) 166, 991, 1055, 1328
HpyF3I CTNAG 1 cut(s) 1475
HpySE526I ACGT 1 cut(s) 692
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 3 cut(s) 344, 829, 1186
Kzo9I GATC 1 cut(s) 922
LmnI GCTCC 1 cut(s) 60
Lsp1109I GCAGC 1 cut(s) 688
LweI GCATC 3 cut(s) 205, 520, 1333
MaeI CTAG 1 cut(s) 681
MaeII ACGT 1 cut(s) 692
MaeIII GTNAC 3 cut(s) 688, 793, 1231
MalI GATC 1 cut(s) 924
MboI GATC 1 cut(s) 922
MfeI CAATTG 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 209
MlsI TGGCCA 1 cut(s) 339
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 1 cut(s) 1457
MmeI TCCRAC 2 cut(s) 103, 714
Mox20I TGGCCA 1 cut(s) 339
Mph1103I ATGCAT 1 cut(s) 805
MscI TGGCCA 1 cut(s) 339
MseI TTAA 6 cut(s) 26, 459, 498, 990, 1023, 1529
MslI CAYNNNNRTG 1 cut(s) 1222
Msp20I TGGCCA 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 64
Mva1269I GAATGC 1 cut(s) 793
MvaI CCWGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 4 cut(s) 166, 991, 1055, 1328
NdeI CATATG 1 cut(s) 799
NdeII GATC 1 cut(s) 922
NlaIII CATG 3 cut(s) 344, 829, 1186
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 688
NsiI ATGCAT 1 cut(s) 805
NspV TTCGAA 1 cut(s) 315
PaeR7I CTCGAG 1 cut(s) 755
PaqCI CACCTGC 1 cut(s) 1358
PctI GAATGC 1 cut(s) 793
PfeI GAWTC 1 cut(s) 536
PflMI CCANNNNNTGG 1 cut(s) 247
PkrI GCNGC 5 cut(s) 131, 154, 678, 952, 1108
PleI GAGTC 1 cut(s) 1456
PpsI GAGTC 1 cut(s) 1456
PshBI ATTAAT 1 cut(s) 1023
PsiI TTATAA 2 cut(s) 1011, 1062
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 207
PspOMI GGGCCC 1 cut(s) 205
PspPI GGNCC 2 cut(s) 205, 206
PspXI VCTCGAGB 1 cut(s) 755
PstI CTGCAG 1 cut(s) 969
RsaI GTAC 4 cut(s) 239, 345, 472, 782
RsaNI GTAC 4 cut(s) 238, 344, 471, 781
RseI CAYNNNNRTG 1 cut(s) 1222
SalI GTCGAC 1 cut(s) 99
SaqAI TTAA 6 cut(s) 26, 459, 498, 990, 1023, 1529
SatI GCNGC 5 cut(s) 130, 153, 677, 951, 1107
Sau3AI GATC 1 cut(s) 922
Sau96I GGNCC 2 cut(s) 205, 206
SchI GAGTC 1 cut(s) 1457
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 3 cut(s) 205, 520, 1333
SfcI CTRYAG 2 cut(s) 965, 1050
Sfr274I CTCGAG 1 cut(s) 755
SfuI TTCGAA 1 cut(s) 315
SlaI CTCGAG 1 cut(s) 755
SmiMI CAYNNNNRTG 1 cut(s) 1222
SmlI CTYRAG 3 cut(s) 614, 662, 755
SmoI CTYRAG 3 cut(s) 614, 662, 755
SsiI CCGC 6 cut(s) 130, 153, 950, 985, 1106, 1251
SspMI CTAG 1 cut(s) 681
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 2 cut(s) 701, 1202
TaiI ACGT 1 cut(s) 695
TaqI TCGA 7 cut(s) 100, 307, 315, 539, 651, 756, 1095
TaqII GACCGA 1 cut(s) 536
TauI GCSGC 4 cut(s) 132, 155, 953, 1109
TfiI GAWTC 1 cut(s) 536
Tru1I TTAA 6 cut(s) 26, 459, 498, 990, 1023, 1529
Tru9I TTAA 6 cut(s) 26, 459, 498, 990, 1023, 1529
TscAI CASTG 2 cut(s) 368, 1205
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 1 cut(s) 676
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 4 cut(s) 370, 648, 669, 989
TspGWI ACGGA 2 cut(s) 86, 458
TspRI CASTG 2 cut(s) 368, 1205
Van91I CCANNNNNTGG 1 cut(s) 247
VspI ATTAAT 1 cut(s) 1023
XapI RAATTY 1 cut(s) 577
XhoI CTCGAG 1 cut(s) 755
XmiI GTMKAC 1 cut(s) 100
XspI CTAG 1 cut(s) 681
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.