MD04G1036700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0013851
Physical Location & Seq
Forward (+)
4098710 .. 4099211
502 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1036700.v1.1.491

Sequence Viewer

Length: 171 bp
ATGAAAAAGAACCGACACAATTTTTCGTATCGATTCCCACAGACGGCGCCAAATTTGATTCTGTTTCTCTGTAATTGTATGGATACAAGTGTTTGGGGGAAGTCCCCCGGAGAAAGGAGGGTGGGGGAGAAGGAAGGAGAGCCTCTTGAATTGTATGAGGACTCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.53

Weight (kDa)

6.55

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013851)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07740
fragaria_vesca FvH4_3g34780
malus_domestica MD04G1036700.v1.1 MD11G1115700.v1.1 MD12G1096600.v1.1
prunus_persica Prupe.6G007300_v2.0.a1
pyrus_communis pycom03g08320
rosa_chinensis RchiOBHm_Chr5g0062521
rosa_laevigata RLG00000035563
rosa_multiflora Rmu_sc0004988.1_g000027
rosa_roxburghii Rroxscaffold_1G00018090
rosa_rugosa Rorug05G0350400
rosa_samantha Rh5AG410400 Rh5BG424400 Rh5CG448100 Rh5DG438700
rosa_wichuraiana Rw5G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 52
AcyI GRCGYC 1 cut(s) 47
AfiI CCNNNNNNNGG 2 cut(s) 43, 114
AgsI TTSAA 1 cut(s) 149
ApoI RAATTY 1 cut(s) 52
AspLEI GCGC 1 cut(s) 49
AsuC2I CCSGG 1 cut(s) 108
BaeI ACNNNNGTAYC 2 cut(s) 75, 108
BanI GGYRCC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 60
BciVI GTATCC 1 cut(s) 76
BcnI CCSGG 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 50
BfuI GTATCC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 31
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 114
BseCI ATCGAT 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 43, 114
BshNI GGYRCC 1 cut(s) 46
BshVI ATCGAT 1 cut(s) 31
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 43, 114
BsmFI GGGAC 1 cut(s) 88
BspDI ATCGAT 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 31
BsuI GTATCC 1 cut(s) 76
BsuTUI ATCGAT 1 cut(s) 31
CfoI GCGC 1 cut(s) 49
ClaI ATCGAT 1 cut(s) 31
CviJI RGCY 1 cut(s) 142
CviKI_1 RGCY 1 cut(s) 142
DinI GGCGCC 1 cut(s) 48
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
FaiI YATR 2 cut(s) 80, 156
FaqI GGGAC 1 cut(s) 88
GlaI GCGC 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 50
HapII CCGG 1 cut(s) 108
HhaI GCGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 47
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 3 cut(s) 33, 58, 161
HpaII CCGG 1 cut(s) 108
Hpy188III TCNNGA 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 124, 128
Hsp92I GRCGYC 1 cut(s) 47
HspAI GCGC 1 cut(s) 47
KasI GGCGCC 1 cut(s) 46
LpnPI CCDG 1 cut(s) 121
MluCI AATT 4 cut(s) 19, 52, 73, 149
Mly113I GGCGCC 1 cut(s) 47
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 3 cut(s) 111, 151, 153
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 108
NarI GGCGCC 1 cut(s) 47
NciI CCSGG 1 cut(s) 108
NlaIV GGNNCC 1 cut(s) 48
PfeI GAWTC 2 cut(s) 33, 58
PleI GAGTC 1 cut(s) 155
PluTI GGCGCC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 48
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 108
SfoI GGCGCC 1 cut(s) 48
SgeI CNNG 4 cut(s) 99, 119, 120, 158
Sse9I AATT 4 cut(s) 19, 52, 73, 149
SspDI GGCGCC 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 106
TaqI TCGA 1 cut(s) 31
TasI AATT 4 cut(s) 19, 52, 73, 149
TfiI GAWTC 2 cut(s) 33, 58
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.