Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0013851

Physical Location & Seq

Genomic Coordinates Forward (+)

10456836 .. 10457514

Gene Structure 679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1115700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCTTGACAAAAAAGTGCAATCTAGTGTTGTGACGTATAATAGTCTTATAGGGTTTTTTGGTAGAAAGGGTGAGTTGGAGAAAGCTAGTGGTTTGTTTGAGGACATGAGACAGAAAGGGAAATACCCGAATGCGGTGACATATGCATTATTGATGGAAGGTTTGTGCTTGGTTGGACAGCATGATGAAGCGAAGAAGATGATGTTTGATATGGAGTATCGAGGATGTAAACCACGGCTTGTGAATTATGGTGTATTGATGACTGATCTTGGAAAGAGAGGGAAGATTGAGGAGGCAAAGTCTTTCCTTCAAGAGATGAAGAAGAGACGGTTTAAGCCAAATAGGCTTACAAAGTCCTTGGTTGAAATGCAAGTTGGAGGCTGTGAGCCGAATGCAGCTTCATACAGGATGATGGTTGATGGGTTTTGTCATACTGAAGATTTTGAGGGAGGTTTGAAGGTTTTGACTGCAATGTTGGCTAGTAGACATTGTCCTCGTTTAGATACATTTGAATGTTTAGTTACGGGCCTATTAAAGTGTGGGCAGATCAATGATGCTTGTTTGTATTGGAGGAGATGGAAAAGAGAAATATGCAATTTCATTTGGAAGCTTGGGAAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent PPR PPR_2 PPR_3 Rad51

Protein Analysis

208

Amino Acids

23.78

Weight (kDa)

9.25

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	3 - 53	4.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	7 - 37	3.1e-07	PPR repeat
PPR_2	PF13041	9 - 56	5.9e-15	PPR repeat family
PPR	PF01535	11 - 40	1.1e-07	PPR repeat
PPR_3	PF13812	32 - 93	5.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	43 - 90	6.2e-07	PPR repeat family
PPR_2	PF13041	80 - 117	5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07740
fragaria_vesca	FvH4_3g34780
malus_domestica	MD04G1036700.v1.1 MD11G1115700.v1.1 MD12G1096600.v1.1
prunus_persica	Prupe.6G007300_v2.0.a1
pyrus_communis	pycom03g08320
rosa_chinensis	RchiOBHm_Chr5g0062521
rosa_laevigata	RLG00000035563
rosa_multiflora	Rmu_sc0004988.1_g000027
rosa_roxburghii	Rroxscaffold_1G00018090
rosa_rugosa	Rorug05G0350400
rosa_samantha	Rh5AG410400 Rh5BG424400 Rh5CG448100 Rh5DG438700
rosa_wichuraiana	Rw5G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	484
AciI	CCGC	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	311, 365, 457, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	357, 389
AluBI	AGCT	4 cut(s)	86, 398, 610, 619
AluI	AGCT	4 cut(s)	86, 398, 610, 619
Alw26I	GTCTC	2 cut(s)	103, 319
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	526
AsuHPI	GGTGA	2 cut(s)	83, 148
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	4 cut(s)	148, 406, 413, 570
BceAI	ACGGC	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	103, 319
BfaI	CTAG	4 cut(s)	24, 87, 480, 622
BglI	GCCNNNNNGGC	1 cut(s)	343
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	526
BmsI	GCATC	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	233, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	233, 357
BseGI	GGATG	2 cut(s)	230, 414
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	477
BseRI	GAGGAG	2 cut(s)	305, 586
BseXI	GCAGC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	528
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	2 cut(s)	103, 319
BsmBI	CGTCTC	1 cut(s)	319
BsmI	GAATGC	2 cut(s)	136, 397
BsnI	GGCC	1 cut(s)	528
Bsp143I	GATC	2 cut(s)	265, 546
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	477
BssECI	CCNNGG	2 cut(s)	233, 357
BssMI	GATC	2 cut(s)	265, 546
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	317
BstDSI	CCRYGG	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	230, 414
BstKTI	GATC	2 cut(s)	268, 549
BstMAI	GTCTC	2 cut(s)	103, 319
BstMBI	GATC	2 cut(s)	265, 546
BstMWI	GCNNNNNNNGC	3 cut(s)	343, 476, 616
BstV1I	GCAGC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	233
BtsCI	GGATG	2 cut(s)	230, 414
Cfr13I	GGNCC	1 cut(s)	526
CviAII	CATG	2 cut(s)	106, 182
DpnI	GATC	2 cut(s)	267, 548
DpnII	GATC	2 cut(s)	265, 546
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	2 cut(s)	109, 185
FatI	CATG	2 cut(s)	105, 181
FauNDI	CATATG	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	237, 421
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	4 cut(s)	24, 87, 480, 622
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	528
Hin1II	CATG	2 cut(s)	109, 185
HindIII	AAGCTT	1 cut(s)	608
HphI	GGTGA	2 cut(s)	83, 148
Hpy166II	GTNNAC	2 cut(s)	230, 485
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	2 cut(s)	230, 485
HpyAV	CCTTC	3 cut(s)	152, 317, 451
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	6 cut(s)	19, 146, 370, 395, 470, 594
HpyF10VI	GCNNNNNNNGC	3 cut(s)	343, 476, 616
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	109, 185
Kzo9I	GATC	2 cut(s)	265, 546
LpnPI	CCDG	1 cut(s)	391
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	4 cut(s)	24, 87, 480, 622
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	3 cut(s)	31, 136, 520
MalI	GATC	2 cut(s)	267, 548
MboI	GATC	2 cut(s)	265, 546
MboII	GAAGA	6 cut(s)	205, 208, 295, 331, 334, 449
MluCI	AATT	2 cut(s)	244, 595
MmeI	TCCRAC	3 cut(s)	57, 154, 355
Mph1103I	ATGCAT	1 cut(s)	148
MseI	TTAA	2 cut(s)	333, 533
MslI	CAYNNNNRTG	1 cut(s)	511
Mva1269I	GAATGC	2 cut(s)	136, 397
MwoI	GCNNNNNNNGC	3 cut(s)	343, 476, 616
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	2 cut(s)	265, 546
NlaIII	CATG	2 cut(s)	109, 185
NmuCI	GTSAC	2 cut(s)	31, 136
NsiI	ATGCAT	1 cut(s)	148
PctI	GAATGC	2 cut(s)	136, 397
PflFI	GACNNNGTC	1 cut(s)	489
PkrI	GCNGC	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	526
PsyI	GACNNNGTC	1 cut(s)	489
RseI	CAYNNNNRTG	1 cut(s)	511
SaqAI	TTAA	2 cut(s)	333, 533
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	265, 546
Sau96I	GGNCC	1 cut(s)	526
SetI	ASST	8 cut(s)	38, 88, 163, 400, 454, 462, 612, 621
SfaNI	GCATC	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	511
Sse9I	AATT	2 cut(s)	244, 595
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	4 cut(s)	24, 87, 480, 622
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	220
TasI	AATT	2 cut(s)	244, 595
Tru1I	TTAA	2 cut(s)	333, 533
Tru9I	TTAA	2 cut(s)	333, 533
TseFI	GTSAC	2 cut(s)	31, 136
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	2 cut(s)	31, 136
TspDTI	ATGAA	4 cut(s)	201, 332, 390, 589
Tth111I	GACNNNGTC	1 cut(s)	489
XmiI	GTMKAC	1 cut(s)	484
XspI	CTAG	4 cut(s)	24, 87, 480, 622
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.