AT1G08040

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002168
Physical Location & Seq
Reverse (-)
2495309 .. 2498764
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08040.1

Sequence Viewer

Length: 1149 bp
ATGGGGACGATGCACCGGAGTGGTGCTCCCAGAAGGACAAATGAAAATGCGAAGCTTATCATAACGACAATCGTGGGAGTGGTGTTTGGTTTTTTTGTTGGTATCACATTACCATTAGGTTCCTTTAGAAAGATTAGCTTACCTTCAGGCCTTATGTCATCTCTTGATGTAGCCATGTCAGATGGGAAATTGTTTTCTGGTGGCAGATCACCTGAAGATATTGGTTCAAGAAAGTCTCCTAAGATATATGTTCCAACCAATCCGCATGGTGCAGAACTACTTCCTCCTGGGATTATAGTGGCAGAAACAGATTTCTACTTGCGCCGATTATGGGGTGAACCTAGTGAAGATTTGAAGAAGAAGCCAAAGTATCTCGTAACTTTTACAGTTGGATTTGAGCAGAGAAACAACATTAATGCAGCTGTTAAGAAGTTTTCTGAAGATTTCCAAATATTGTTATTCCATTATGATGGCCGAACAACTGAGTGGGACCAGTTTGAGTGGTCTAAAAATGCAATACATATCAGTGCAAAAAAGCAAACAAAATGGTGGTATGCAAAGAGATTTTTGCATCCTGATGTTGTCTCAGCTTATGAGTATATATTTATATGGGATGAAGATCTTGGAGTCGAGCACTTCAATGCAGATAGGTACGTTGAGTTAGTTAAGAAGCATGGTTTGGAGATTTCTCAACCAGGCTTAGAGCCAAACAACGGACTTACATGGGAAATGACAAAGAGGAGAGGTGACCGAGATGTCCACAAAGAAACTAAGGAAAAACCAGGATGGTGCAGTGATCCACATTTACCTCCATGTGCTGCGTTTGTTGAGATTATGGCACCTGTATTTTCTAGAGAAGCATGGCGATGTGTATGGCATATGATTCAGAATGATCTTGTTCATGGATGGGGTCTCGATTTTGCTCTCAGACGATGCGTTGAGCCTGCTCATGAGAAGATTGGTGTGGTAGATTCACAGTGGATTATCCATCAAGTGATTCCTTCCCTTGGAAGTCAGGGTGAGTCGGAGGAGGGGAAATCTCCATGGCAAGGGGTGAGGGAGAGATGCAGAAACGAATGGACGATGTTCCAGAATCGCGTGGCAGAAGCTGATAAAGCATACATGGAACAACACAAGGTAAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

382

Amino Acids

43.87

Weight (kDa)

7.24

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 86 - 372 3.1e-141 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 838
AccII CGCG 1 cut(s) 1098
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 791
AcoI YGGCCR 1 cut(s) 472
AcuI CTGAAG 3 cut(s) 129, 234, 459
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 4 cut(s) 331, 713, 1007, 1049
AgsI TTSAA 3 cut(s) 228, 355, 640
AjnI CCWGG 3 cut(s) 286, 694, 781
AjuI GAANNNNNNNTTGG 2 cut(s) 662, 694
AleI CACNNNNGTG 1 cut(s) 18
AluBI AGCT 5 cut(s) 55, 138, 422, 590, 1109
AluI AGCT 5 cut(s) 55, 138, 422, 590, 1109
Alw21I GWGCWC 2 cut(s) 28, 636
Alw26I GTCTC 3 cut(s) 240, 589, 917
AlwI GGATC 1 cut(s) 791
AlwNI CAGNNNCTG 1 cut(s) 1109
AoxI GGCC 2 cut(s) 148, 472
ApeKI GCWGC 2 cut(s) 419, 818
AseI ATTAAT 1 cut(s) 414
Asp700I GAANNNNTTC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 490
AsuHPI GGTGA 5 cut(s) 201, 347, 758, 1031, 1066
AvaII GGWCC 1 cut(s) 490
BanI GGYRCC 1 cut(s) 838
Bbv12I GWGCWC 2 cut(s) 28, 636
BbvI GCAGC 2 cut(s) 431, 805
BccI CCATC 5 cut(s) 176, 464, 780, 900, 996
BciT130I CCWGG 3 cut(s) 288, 696, 783
BcoDI GTCTC 3 cut(s) 240, 589, 917
BfaI CTAG 2 cut(s) 342, 852
BglII AGATCT 1 cut(s) 619
BisI GCNGC 2 cut(s) 420, 819
BlsI GCNGC 2 cut(s) 421, 820
Bme1390I CCNGG 3 cut(s) 288, 696, 783
Bme18I GGWCC 1 cut(s) 490
BmgT120I GGNCC 1 cut(s) 490
BmiI GGNNCC 3 cut(s) 121, 491, 840
BmrFI CCNGG 3 cut(s) 288, 696, 783
BmsI GCATC 3 cut(s) 580, 923, 1055
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BsaBI GATNNNNATC 1 cut(s) 618
BsaI GGTCTC 1 cut(s) 917
BsaJI CCNNGG 3 cut(s) 287, 1006, 1043
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 4 cut(s) 331, 713, 1007, 1049
Bse1I ACTGG 1 cut(s) 493
Bse8I GATNNNNATC 1 cut(s) 618
BseBI CCWGG 3 cut(s) 288, 696, 783
BseDI CCNNGG 3 cut(s) 287, 1006, 1043
BseGI GGATG 4 cut(s) 571, 619, 791, 911
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 4 cut(s) 331, 713, 1007, 1049
BseMII CTCAG 3 cut(s) 474, 600, 940
BseNI ACTGG 1 cut(s) 493
BseRI GAGGAG 2 cut(s) 754, 1043
BseXI GCAGC 2 cut(s) 431, 805
BsgI GTGCAG 2 cut(s) 291, 811
Bsh1236I CGCG 1 cut(s) 1098
BshFI GGCC 2 cut(s) 150, 474
BshNI GGYRCC 1 cut(s) 838
BsiHKAI GWGCWC 2 cut(s) 28, 636
BsiSI CCGG 1 cut(s) 16
BslFI GGGAC 2 cut(s) 19, 503
BslI CCNNNNNNNGG 4 cut(s) 331, 713, 1007, 1049
BsmAI GTCTC 3 cut(s) 240, 589, 917
BsmFI GGGAC 2 cut(s) 19, 503
BsnI GGCC 2 cut(s) 150, 474
Bso31I GGTCTC 1 cut(s) 917
Bsp1286I GDGCHC 2 cut(s) 28, 636
Bsp143I GATC 4 cut(s) 206, 619, 796, 892
Bsp19I CCATGG 1 cut(s) 1043
BspACI CCGC 1 cut(s) 263
BspANI GGCC 2 cut(s) 150, 474
BspCNI CTCAG 3 cut(s) 475, 599, 939
BspFNI CGCG 1 cut(s) 1098
BspHI TCATGA 1 cut(s) 949
BspLI GGNNCC 3 cut(s) 121, 491, 840
BspPI GGATC 1 cut(s) 791
BspT107I GGYRCC 1 cut(s) 838
BspTNI GGTCTC 1 cut(s) 917
BsrI ACTGG 1 cut(s) 493
BssECI CCNNGG 3 cut(s) 287, 1006, 1043
BssMI GATC 4 cut(s) 206, 619, 796, 892
BssT1I CCWWGG 2 cut(s) 1006, 1043
Bst2UI CCWGG 3 cut(s) 288, 696, 783
Bst4CI ACNGT 2 cut(s) 388, 978
BstC8I GCNNGC 1 cut(s) 945
BstDEI CTNAG 6 cut(s) 240, 483, 586, 700, 771, 926
BstDSI CCRYGG 1 cut(s) 1043
BstEII GGTNACC 1 cut(s) 746
BstF5I GGATG 4 cut(s) 571, 619, 791, 911
BstFNI CGCG 1 cut(s) 1098
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 4 cut(s) 209, 622, 799, 895
BstMAI GTCTC 3 cut(s) 240, 589, 917
BstMBI GATC 4 cut(s) 206, 619, 796, 892
BstMWI GCNNNNNNNGC 1 cut(s) 1115
BstNI CCWGG 3 cut(s) 288, 696, 783
BstPI GGTNACC 1 cut(s) 746
BstSCI CCNGG 3 cut(s) 286, 694, 781
BstUI CGCG 1 cut(s) 1098
BstV1I GCAGC 2 cut(s) 431, 805
BstX2I RGATCY 1 cut(s) 619
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 1 cut(s) 619
BsuRI GGCC 2 cut(s) 150, 474
BtgI CCRYGG 1 cut(s) 1043
BtgZI GCGATG 1 cut(s) 880
BtsCI GGATG 4 cut(s) 571, 619, 791, 911
BtsI GCAGTG 1 cut(s) 799
BtsIMutI CAGTG 3 cut(s) 532, 799, 983
Cac8I GCNNGC 1 cut(s) 945
CaiI CAGNNNCTG 1 cut(s) 1109
CciI TCATGA 1 cut(s) 949
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 490
Csp6I GTAC 1 cut(s) 652
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 6 cut(s) 240, 483, 586, 700, 771, 926
DpnI GATC 4 cut(s) 208, 621, 798, 894
DpnII GATC 4 cut(s) 206, 619, 796, 892
DrdI GACNNNNNNGTC 1 cut(s) 755
DseDI GACNNNNNNGTC 1 cut(s) 755
EaeI YGGCCR 1 cut(s) 472
Eco130I CCWWGG 2 cut(s) 1006, 1043
Eco147I AGGCCT 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 917
Eco47I GGWCC 1 cut(s) 490
Eco57I CTGAAG 3 cut(s) 129, 234, 459
Eco91I GGTNACC 1 cut(s) 746
EcoO65I GGTNACC 1 cut(s) 746
EcoRII CCWGG 3 cut(s) 286, 694, 781
EcoT14I CCWWGG 2 cut(s) 1006, 1043
ErhI CCWWGG 2 cut(s) 1006, 1043
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 2 cut(s) 19, 503
FauNDI CATATG 1 cut(s) 879
Fnu4HI GCNGC 2 cut(s) 420, 819
FokI GGATG 4 cut(s) 558, 626, 798, 918
Fsp4HI GCNGC 2 cut(s) 420, 819
FspBI CTAG 2 cut(s) 342, 852
GlaI GCGC 1 cut(s) 323
GluI GCNGC 2 cut(s) 420, 819
HaeIII GGCC 2 cut(s) 150, 474
HapII CCGG 1 cut(s) 16
HhaI GCGC 1 cut(s) 324
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 6 cut(s) 627, 883, 971, 997, 1022, 1093
HpaII CCGG 1 cut(s) 16
HphI GGTGA 5 cut(s) 201, 347, 758, 1031, 1066
Hpy166II GTNNAC 2 cut(s) 338, 760
Hpy188I TCNGA 5 cut(s) 181, 439, 888, 929, 1027
Hpy188III TCNNGA 7 cut(s) 164, 228, 575, 852, 914, 950, 1090
Hpy8I GTNNAC 2 cut(s) 338, 760
HpyAV CCTTC 3 cut(s) 27, 153, 1011
HpyCH4III ACNGT 2 cut(s) 388, 978
HpyCH4IV ACGT 1 cut(s) 654
HpyF10VI GCNNNNNNNGC 1 cut(s) 1115
HpyF3I CTNAG 6 cut(s) 240, 483, 586, 700, 771, 926
HpySE526I ACGT 1 cut(s) 654
HspAI GCGC 1 cut(s) 322
Kzo9I GATC 4 cut(s) 206, 619, 796, 892
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 2 cut(s) 431, 805
LweI GCATC 3 cut(s) 580, 923, 1055
MaeI CTAG 2 cut(s) 342, 852
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 2 cut(s) 376, 746
MalI GATC 4 cut(s) 208, 621, 798, 894
MboI GATC 4 cut(s) 206, 619, 796, 892
MboII GAAGA 7 cut(s) 227, 359, 367, 370, 452, 629, 967
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 2 cut(s) 28, 636
MluCI AATT 1 cut(s) 188
MlyI GAGTC 2 cut(s) 636, 1031
MmeI TCCRAC 3 cut(s) 278, 370, 1005
MnlI CCTC 7 cut(s) 294, 732, 737, 819, 1021, 1024, 1050
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 3 cut(s) 414, 426, 666
MslI CAYNNNNRTG 6 cut(s) 18, 468, 525, 576, 639, 865
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 3 cut(s) 288, 696, 783
MvaI CCWGG 3 cut(s) 288, 696, 783
MvnI CGCG 1 cut(s) 1098
MwoI GCNNNNNNNGC 1 cut(s) 1115
NcoI CCATGG 1 cut(s) 1043
NdeI CATATG 1 cut(s) 879
NdeII GATC 4 cut(s) 206, 619, 796, 892
NlaIV GGNNCC 3 cut(s) 121, 491, 840
NmuCI GTSAC 1 cut(s) 746
OliI CACNNNNGTG 1 cut(s) 18
PagI TCATGA 1 cut(s) 949
PceI AGGCCT 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 4 cut(s) 883, 971, 997, 1093
PkrI GCNGC 2 cut(s) 421, 820
PleI GAGTC 2 cut(s) 635, 1030
PpsI GAGTC 2 cut(s) 635, 1030
PshBI ATTAAT 1 cut(s) 414
Psp6I CCWGG 3 cut(s) 286, 694, 781
PspEI GGTNACC 1 cut(s) 746
PspGI CCWGG 3 cut(s) 286, 694, 781
PspN4I GGNNCC 3 cut(s) 121, 491, 840
PspPI GGNCC 1 cut(s) 490
PstNI CAGNNNCTG 1 cut(s) 1109
PsuI RGATCY 1 cut(s) 619
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 6 cut(s) 18, 468, 525, 576, 639, 865
SaqAI TTAA 3 cut(s) 414, 426, 666
SatI GCNGC 2 cut(s) 420, 819
Sau3AI GATC 4 cut(s) 206, 619, 796, 892
Sau96I GGNCC 1 cut(s) 490
SchI GAGTC 2 cut(s) 636, 1031
ScrFI CCNGG 3 cut(s) 288, 696, 783
SduI GDGCHC 2 cut(s) 28, 636
SfaNI GCATC 3 cut(s) 580, 923, 1055
SinI GGWCC 1 cut(s) 490
SmiMI CAYNNNNRTG 6 cut(s) 18, 468, 525, 576, 639, 865
Sse9I AATT 1 cut(s) 188
SseBI AGGCCT 1 cut(s) 150
SsiI CCGC 1 cut(s) 263
SspI AATATT 1 cut(s) 453
SspMI CTAG 2 cut(s) 342, 852
StuI AGGCCT 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 286, 694, 781
StyI CCWWGG 2 cut(s) 1006, 1043
TaaI ACNGT 2 cut(s) 388, 978
TaiI ACGT 1 cut(s) 657
TaqI TCGA 2 cut(s) 630, 915
TaqII GACCGA 1 cut(s) 765
TasI AATT 1 cut(s) 188
TfiI GAWTC 4 cut(s) 883, 971, 997, 1093
Tru1I TTAA 3 cut(s) 414, 426, 666
Tru9I TTAA 3 cut(s) 414, 426, 666
TscAI CASTG 3 cut(s) 532, 799, 983
TseFI GTSAC 1 cut(s) 746
TseI GCWGC 2 cut(s) 419, 818
Tsp45I GTSAC 1 cut(s) 746
TspDTI ATGAA 3 cut(s) 57, 630, 890
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 3 cut(s) 532, 799, 983
VpaK11BI GGWCC 1 cut(s) 490
VspI ATTAAT 1 cut(s) 414
XbaI TCTAGA 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 2 cut(s) 342, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.