Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002168

Physical Location & Seq

Genomic Coordinates Forward (+)

37740156 .. 37741186

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0317300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAAACGGCGGAGCTGCCCAAGACTATCGTGCGCCGTGTGGTGAAGGATAAGCTTTCCGAGTGCTCCAAAGGCGACGGCGACCTGAACGTCCACAAAGAAGCTCTCACCGCCTTCTCCGAGAGCGCCCGCATCTTCATCCACTACCTCTCCGCCACAGCCAACGACATCTGCAAGGGATCGAAGAGGCAGACGATCAACGGCGACGACGTTTTGAAGGCGTTGGAGGACATTGAGTTCCCTGAGTTCGTCGAGCCTCTCAAGGCCTCTCTTGAAGGGCTGAGGGAGAAGAATGCTGGGAAGAAGGCAGGAACATCAAAGGCAAAGGAAGAGATAACAAAAGAGGCGAAAACAAAGGAAGTGAAAAAGAAGAGGAAATTGGAAGAGCCGCCGCCCAAGGAAGAGGAGGAAGAAGAGGAAGAAAACCAAGATGAGGATGGGGGCGATGGCACTAGCGATAACTCGAGCAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

158

Amino Acids

17.56

Weight (kDa)

5.01

Isoelectric Point (pI)

60.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	4 - 75	1.2e-09	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Histone	PF00125	4 - 75	1.1e-06	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08040 AT1G08040 AT1G08040 AT1G08040 AT2G28310 AT2G28310 AT2G28310
fragaria_vesca	FvH4_3g31900 FvH4_3g31900 FvH4_3g31900 FvH4_3g31900 FvH4_3g31900
malus_domestica	MD03G1120300.v1.1 MD11G1138600.v1.1
prunus_persica	Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1
pyrus_communis	pycom11g11440
rosa_chinensis	RchiOBHm_Chr5g0058671
rosa_laevigata	RLG00000035239
rosa_roxburghii	Rroxscaffold_1G00021750
rosa_rugosa	Rorug05G0317200 Rorug05G0317300 Rorug05G0317400 Rorug05G0317400 Rorug05G0317400
rosa_samantha	Rh5AG382900 Rh5BG394800 Rh5CG418600 Rh5DG410200
rosa_wichuraiana	Rw5G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AciI	CCGC	6 cut(s)	11, 111, 130, 153, 389, 392
AclWI	GGATC	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	2 cut(s)	217, 275
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	3 cut(s)	16, 55, 104
AluI	AGCT	3 cut(s)	16, 55, 104
Alw21I	GWGCWC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	16
AspLEI	GCGC	2 cut(s)	36, 128
AsuHPI	GGTGA	2 cut(s)	55, 100
AvaI	CYCGRG	1 cut(s)	463
Bbv12I	GWGCWC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	2 cut(s)	431, 440
BceAI	ACGGC	4 cut(s)	21, 24, 94, 217
BfaI	CTAG	1 cut(s)	453
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	3 cut(s)	17, 389, 392
BlsI	GCNGC	3 cut(s)	18, 390, 393
BmeT110I	CYCGRG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	138, 442
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	2 cut(s)	234, 272
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	3
BseYI	CCCAGC	1 cut(s)	296
BshFI	GGCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	463
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	179, 195
BspACI	CCGC	6 cut(s)	11, 111, 130, 153, 389, 392
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	2 cut(s)	235, 273
BspPI	GGATC	1 cut(s)	187
BspQI	GCTCTTC	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	2 cut(s)	179, 195
BssT1I	CCWWGG	1 cut(s)	396
Bst6I	CTCTTC	6 cut(s)	179, 324, 365, 378, 396, 408
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	243, 281
BstF5I	GGATG	2 cut(s)	138, 442
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	36, 128
BstKTI	GATC	2 cut(s)	182, 198
BstMBI	GATC	2 cut(s)	179, 195
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 110
BstV1I	GCAGC	1 cut(s)	3
BsuRI	GGCC	1 cut(s)	266
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	2 cut(s)	138, 442
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	2 cut(s)	36, 128
CviJI	RGCY	8 cut(s)	16, 55, 104, 161, 256, 266, 280, 388
CviKI_1	RGCY	8 cut(s)	16, 55, 104, 161, 256, 266, 280, 388
DdeI	CTNAG	2 cut(s)	243, 281
DpnI	GATC	2 cut(s)	181, 197
DpnII	GATC	2 cut(s)	179, 195
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	6 cut(s)	179, 324, 365, 378, 396, 408
EarI	CTCTTC	6 cut(s)	179, 324, 365, 378, 396, 408
EciI	GGCGGA	2 cut(s)	26, 142
Eco130I	CCWWGG	1 cut(s)	396
Eco147I	AGGCCT	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	3 cut(s)	17, 389, 392
FokI	GGATG	2 cut(s)	125, 449
Fsp4HI	GCNGC	3 cut(s)	17, 389, 392
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	2 cut(s)	35, 127
GluI	GCNGC	3 cut(s)	17, 389, 392
GsaI	CCCAGC	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	266
HhaI	GCGC	2 cut(s)	36, 128
Hin6I	GCGC	2 cut(s)	34, 126
HinP1I	GCGC	2 cut(s)	34, 126
HindIII	AAGCTT	1 cut(s)	53
HphI	GGTGA	2 cut(s)	55, 100
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	61, 121
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	4 cut(s)	80, 209, 212, 254
HpyAV	CCTTC	5 cut(s)	40, 124, 211, 269, 298
HpyCH4IV	ACGT	2 cut(s)	90, 210
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 110
HpyF3I	CTNAG	2 cut(s)	243, 281
HpySE526I	ACGT	2 cut(s)	90, 210
HspAI	GCGC	2 cut(s)	34, 126
Kzo9I	GATC	2 cut(s)	179, 195
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	2 cut(s)	13, 71
LpnPI	CCDG	4 cut(s)	98, 255, 282, 294
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	2 cut(s)	90, 210
MalI	GATC	2 cut(s)	181, 197
MboI	GATC	2 cut(s)	179, 195
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	72, 110
NdeII	GATC	2 cut(s)	179, 195
PaeR7I	CTCGAG	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	1 cut(s)	298
PkrI	GCNGC	3 cut(s)	18, 390, 393
PspFI	CCCAGC	1 cut(s)	296
PspXI	VCTCGAGB	1 cut(s)	463
SapI	GCTCTTC	1 cut(s)	378
SatI	GCNGC	3 cut(s)	17, 389, 392
Sau3AI	GATC	2 cut(s)	179, 195
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	7 cut(s)	18, 57, 87, 93, 106, 150, 213
SfaNI	GCATC	1 cut(s)	141
Sfr274I	CTCGAG	1 cut(s)	463
SlaI	CTCGAG	1 cut(s)	463
SmlI	CTYRAG	2 cut(s)	260, 463
SmoI	CTYRAG	2 cut(s)	260, 463
Sse9I	AATT	1 cut(s)	377
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	6 cut(s)	11, 111, 130, 153, 389, 392
SspMI	CTAG	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	396
TaiI	ACGT	2 cut(s)	93, 213
TaqI	TCGA	3 cut(s)	182, 252, 464
TasI	AATT	1 cut(s)	377
TauI	GCSGC	2 cut(s)	391, 394
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XhoI	CTCGAG	1 cut(s)	463
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.