Rh5DG410200

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002168
Physical Location & Seq
Forward (+)
65112094 .. 65116715
4622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG410200.1

Sequence Viewer

Length: 1149 bp
ATGGGCACTGTAAACCGCAGTGGGGTTAGAAAAACAAATGACAGTGCCAGGGTTATTTTCTATACAAGTGTTGGACTTCTCTTTGGATTTTTCATTGGTGTATCATTGCAGGCAGCTTTTCTAACAAAGCTTAGGTTTTCACTTCCATCTTTTGATGTATACTTTCCCGATATGCGTAGAACAACTAACACAAACAAAAGGCTTGAGGATGAAGGATCAGAGGGTGTTCCTAAGATATATGTTCCAACAAATCCTTCTGGTGCTGAAACACTACCACCAGGAATTGTTGTTTCACAAACTGATTTGTATATGCGCAGATTATGGGGTGAACCCAGTGAGGATCTAAAAACAAAGCCAAAGTACTTGGTAACATTTACCGTTGGTATTAATCAGAAGAAAAATATTGATGCAGCAGTTAAAAAGTTCTCTGAGGATTTCACTATCTTGCTTTTTCACTATGATGGCCGGACTAGTGAATGGGATGAATTTGAGTGGTCAAAGAGAGCAATTCATGTTAGTGCGAAGAGACAAGCAAAGTGGTGGTATGCAAAAAGATTTCTGCATCCTGATGTTGTGTCAGCTTATGATTATATATTCATTTGGGATGAAGATTTGGGTGTAGAACACTTCAATGCAGAGAAGTATATTGAGTTGGTTAAGAAATATGGTTTGGAAATCTCTCAACCTGGTCTTGAGCCCAATAATGGTTTGACATGGGAGATGACAAAGAGGAGAGGTGACAGAGAAGTCCACAAGGATACAGAAGAAAAACCGGGCTGGTGTAGTGACCCACATCTTCCCCCTTGTGCAGCGTTTGTGGAAATAATGGCCCCTGTCTTTTCTCGGGAAGCTTGGCGTTGTGTCTGGCATATGATTCAGAATGATTTGGTGCATGGATGGGGATTGGATTTTGCTCTCCGAAGATGTGTAGAGCCTGCACATGAAAAGATTGGCGTAGTCGATTCACAGTGGATTGTTCATCAAGTGATTCCTTCCCTTGGGAGCCAGGGAGAGTCTGAGGATGGAAAATCGCCCTGGGAATCGGTACGTGACATGGTGAGATCAAGGTGCAAAAACGAATGGGCTGAATTCCAGTCTCGCATACTCGGTGCAGACAAGGCATACCTTGCTAAGAGGGGAAGGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

382

Amino Acids

43.96

Weight (kDa)

7.15

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 83 - 373 4.1e-141 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 746
Acc16I TGCGCA 1 cut(s) 314
AccI GTMKAC 1 cut(s) 159
AciI CCGC 1 cut(s) 16
AclWI GGATC 2 cut(s) 223, 348
AcoI YGGCCR 1 cut(s) 463
AcsI RAATTY 2 cut(s) 485, 1088
AfaI GTAC 2 cut(s) 362, 1047
AfiI CCNNNNNNNGG 3 cut(s) 22, 704, 998
AgsI TTSAA 1 cut(s) 631
AhlI ACTAGT 1 cut(s) 470
AjnI CCWGG 5 cut(s) 47, 277, 685, 1005, 1034
AjuI GAANNNNNNNTTGG 4 cut(s) 238, 270, 653, 685
AluBI AGCT 4 cut(s) 116, 130, 581, 851
AluI AGCT 4 cut(s) 116, 130, 581, 851
Alw26I GTCTC 2 cut(s) 520, 1101
AlwI GGATC 2 cut(s) 223, 348
Ama87I CYCGRG 1 cut(s) 843
AoxI GGCC 2 cut(s) 463, 828
ApeKI GCWGC 3 cut(s) 113, 410, 809
ApoI RAATTY 2 cut(s) 485, 1088
AseI ATTAAT 1 cut(s) 387
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 829
AsuC2I CCSGG 1 cut(s) 774
AsuHPI GGTGA 3 cut(s) 338, 749, 1069
AvaI CYCGRG 1 cut(s) 843
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 699
BbvI GCAGC 3 cut(s) 125, 422, 821
BccI CCATC 4 cut(s) 154, 455, 891, 1016
BciT130I CCWGG 5 cut(s) 49, 279, 687, 1007, 1036
BciVI GTATCC 1 cut(s) 751
BcnI CCSGG 1 cut(s) 774
BcoDI GTCTC 2 cut(s) 520, 1101
BcuI ACTAGT 1 cut(s) 470
BfaI CTAG 1 cut(s) 471
BfuI GTATCC 1 cut(s) 751
BisI GCNGC 3 cut(s) 114, 411, 810
BlsI GCNGC 3 cut(s) 115, 412, 811
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 6 cut(s) 49, 279, 687, 774, 1007, 1036
BmeT110I CYCGRG 1 cut(s) 843
BmgT120I GGNCC 1 cut(s) 829
BmiI GGNNCC 2 cut(s) 831, 1004
BmrFI CCNGG 6 cut(s) 49, 279, 687, 774, 1007, 1036
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 2 cut(s) 397, 571
BmuI ACTGGG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 131
BpuEI CTTGAG 2 cut(s) 224, 713
BpuMI CCSGG 1 cut(s) 774
BsaAI YACGTR 1 cut(s) 1049
BsaJI CCNNGG 5 cut(s) 48, 997, 1006, 1034, 1035
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 704, 998
Bse1I ACTGG 2 cut(s) 333, 1093
Bse3DI GCAATG 1 cut(s) 104
BseBI CCWGG 5 cut(s) 49, 279, 687, 1007, 1036
BseDI CCNNGG 5 cut(s) 48, 997, 1006, 1034, 1035
BseGI GGATG 6 cut(s) 214, 487, 562, 610, 902, 1027
BseLI CCNNNNNNNGG 3 cut(s) 22, 704, 998
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 2 cut(s) 420, 1008
BseNI ACTGG 2 cut(s) 333, 1093
BseRI GAGGAG 1 cut(s) 745
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 3 cut(s) 125, 422, 821
BsgI GTGCAG 3 cut(s) 828, 921, 1131
BshFI GGCC 2 cut(s) 465, 830
BsiHKCI CYCGRG 1 cut(s) 843
BsiSI CCGG 2 cut(s) 466, 773
BslI CCNNNNNNNGG 3 cut(s) 22, 704, 998
BsmAI GTCTC 2 cut(s) 520, 1101
BsnI GGCC 2 cut(s) 465, 830
BsoBI CYCGRG 1 cut(s) 843
Bsp1286I GDGCHC 2 cut(s) 8, 699
Bsp143I GATC 3 cut(s) 215, 340, 1061
BspACI CCGC 1 cut(s) 16
BspANI GGCC 2 cut(s) 465, 830
BspCNI CTCAG 2 cut(s) 421, 1009
BspLI GGNNCC 2 cut(s) 831, 1004
BspPI GGATC 2 cut(s) 223, 348
BsrDI GCAATG 1 cut(s) 104
BsrI ACTGG 2 cut(s) 333, 1093
BssECI CCNNGG 5 cut(s) 48, 997, 1006, 1034, 1035
BssMI GATC 3 cut(s) 215, 340, 1061
BssNAI GTATAC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 997
Bst1107I GTATAC 1 cut(s) 160
Bst2UI CCWGG 5 cut(s) 49, 279, 687, 1007, 1036
Bst4CI ACNGT 4 cut(s) 10, 44, 379, 969
Bst6I CTCTTC 1 cut(s) 518
BstAPI GCANNNNNTGC 1 cut(s) 1127
BstBAI YACGTR 1 cut(s) 1049
BstC8I GCNNGC 2 cut(s) 111, 936
BstDEI CTNAG 5 cut(s) 131, 231, 429, 1017, 1131
BstF5I GGATG 6 cut(s) 214, 487, 562, 610, 902, 1027
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 3 cut(s) 218, 343, 1064
BstMAI GTCTC 2 cut(s) 520, 1101
BstMBI GATC 3 cut(s) 215, 340, 1061
BstMWI GCNNNNNNNGC 2 cut(s) 1118, 1127
BstNI CCWGG 5 cut(s) 49, 279, 687, 1007, 1036
BstSCI CCNGG 6 cut(s) 47, 277, 685, 772, 1005, 1034
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 3 cut(s) 125, 422, 821
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BstZ17I GTATAC 1 cut(s) 160
BsuI GTATCC 1 cut(s) 751
BsuRI GGCC 2 cut(s) 465, 830
BtsCI GGATG 6 cut(s) 214, 487, 562, 610, 902, 1027
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 5 cut(s) 6, 25, 49, 340, 974
Cac8I GCNNGC 2 cut(s) 111, 936
CfoI GCGC 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 829
CsiI ACCWGGT 1 cut(s) 685
Csp6I GTAC 2 cut(s) 361, 1046
CspCI CAANNNNNGTGG 2 cut(s) 518, 553
CviAII CATG 5 cut(s) 512, 714, 893, 941, 1054
CviQI GTAC 2 cut(s) 361, 1046
DdeI CTNAG 5 cut(s) 131, 231, 429, 1017, 1131
DpnI GATC 3 cut(s) 217, 342, 1063
DpnII GATC 3 cut(s) 215, 340, 1061
DrdI GACNNNNNNGTC 1 cut(s) 746
DseDI GACNNNNNNGTC 1 cut(s) 746
EaeI YGGCCR 1 cut(s) 463
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Eco130I CCWWGG 1 cut(s) 997
Eco24I GRGCYC 1 cut(s) 699
Eco88I CYCGRG 1 cut(s) 843
EcoRI GAATTC 1 cut(s) 1088
EcoRII CCWGG 5 cut(s) 47, 277, 685, 1005, 1034
EcoT14I CCWWGG 1 cut(s) 997
EcoT38I GRGCYC 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 997
FaeI CATG 5 cut(s) 515, 717, 896, 944, 1057
FatI CATG 5 cut(s) 511, 713, 892, 940, 1053
FauNDI CATATG 1 cut(s) 870
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 114, 411, 810
FokI GGATG 6 cut(s) 221, 494, 549, 617, 909, 1034
FriOI GRGCYC 1 cut(s) 699
Fsp4HI GCNGC 3 cut(s) 114, 411, 810
FspBI CTAG 1 cut(s) 471
FspI TGCGCA 1 cut(s) 314
GlaI GCGC 1 cut(s) 314
GluI GCNGC 3 cut(s) 114, 411, 810
HaeIII GGCC 2 cut(s) 465, 830
HapII CCGG 2 cut(s) 466, 773
HhaI GCGC 1 cut(s) 315
Hin1II CATG 5 cut(s) 515, 717, 896, 944, 1057
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HindIII AAGCTT 2 cut(s) 128, 849
HinfI GANTC 5 cut(s) 874, 962, 988, 1013, 1040
HpaII CCGG 2 cut(s) 466, 773
HphI GGTGA 3 cut(s) 338, 749, 1069
Hpy166II GTNNAC 4 cut(s) 13, 160, 329, 751
Hpy188I TCNGA 6 cut(s) 220, 393, 430, 879, 920, 1018
Hpy188III TCNNGA 4 cut(s) 167, 566, 692, 845
Hpy8I GTNNAC 4 cut(s) 13, 160, 329, 751
HpyAV CCTTC 4 cut(s) 206, 264, 1002, 1134
HpyCH4III ACNGT 4 cut(s) 10, 44, 379, 969
HpyCH4IV ACGT 1 cut(s) 1048
HpyF10VI GCNNNNNNNGC 2 cut(s) 1118, 1127
HpyF3I CTNAG 5 cut(s) 131, 231, 429, 1017, 1131
HpySE526I ACGT 1 cut(s) 1048
Hsp92II CATG 5 cut(s) 515, 717, 896, 944, 1057
HspAI GCGC 1 cut(s) 313
Kzo9I GATC 3 cut(s) 215, 340, 1061
LmnI GCTCC 1 cut(s) 1002
Lsp1109I GCAGC 3 cut(s) 125, 422, 821
LweI GCATC 2 cut(s) 397, 571
MabI ACCWGGT 1 cut(s) 685
MaeI CTAG 1 cut(s) 471
MaeII ACGT 1 cut(s) 1048
MaeIII GTNAC 4 cut(s) 367, 737, 785, 1049
MalI GATC 3 cut(s) 217, 342, 1063
MboI GATC 3 cut(s) 215, 340, 1061
MboII GAAGA 6 cut(s) 406, 535, 620, 776, 788, 933
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 2 cut(s) 8, 699
MluCI AATT 4 cut(s) 282, 485, 507, 1088
MlyI GAGTC 1 cut(s) 1022
MmeI TCCRAC 2 cut(s) 52, 269
MnlI CCTC 8 cut(s) 199, 214, 331, 424, 723, 728, 1012, 1128
MseI TTAA 3 cut(s) 387, 417, 657
MslI CAYNNNNRTG 4 cut(s) 459, 516, 567, 630
MspI CCGG 2 cut(s) 466, 773
MspR9I CCNGG 6 cut(s) 49, 279, 687, 774, 1007, 1036
MvaI CCWGG 5 cut(s) 49, 279, 687, 1007, 1036
MwoI GCNNNNNNNGC 2 cut(s) 1118, 1127
NciI CCSGG 1 cut(s) 774
NdeI CATATG 1 cut(s) 870
NdeII GATC 3 cut(s) 215, 340, 1061
NlaIII CATG 5 cut(s) 515, 717, 896, 944, 1057
NlaIV GGNNCC 2 cut(s) 831, 1004
NmuCI GTSAC 3 cut(s) 737, 785, 1049
NsbI TGCGCA 1 cut(s) 314
PasI CCCWGGG 1 cut(s) 1035
PfeI GAWTC 4 cut(s) 874, 962, 988, 1040
PkrI GCNGC 3 cut(s) 115, 412, 811
PleI GAGTC 1 cut(s) 1021
PpsI GAGTC 1 cut(s) 1021
Ppu21I YACGTR 1 cut(s) 1049
PshBI ATTAAT 1 cut(s) 387
Psp6I CCWGG 5 cut(s) 47, 277, 685, 1005, 1034
PspGI CCWGG 5 cut(s) 47, 277, 685, 1005, 1034
PspN4I GGNNCC 2 cut(s) 831, 1004
PspPI GGNCC 1 cut(s) 829
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 2 cut(s) 362, 1047
RsaNI GTAC 2 cut(s) 361, 1046
RseI CAYNNNNRTG 4 cut(s) 459, 516, 567, 630
SaqAI TTAA 3 cut(s) 387, 417, 657
SatI GCNGC 3 cut(s) 114, 411, 810
Sau3AI GATC 3 cut(s) 215, 340, 1061
Sau96I GGNCC 1 cut(s) 829
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 1 cut(s) 1022
ScrFI CCNGG 6 cut(s) 49, 279, 687, 774, 1007, 1036
SduI GDGCHC 2 cut(s) 8, 699
SexAI ACCWGGT 1 cut(s) 685
SfaNI GCATC 2 cut(s) 397, 571
SmiMI CAYNNNNRTG 4 cut(s) 459, 516, 567, 630
SmlI CTYRAG 2 cut(s) 203, 692
SmoI CTYRAG 2 cut(s) 203, 692
SpeI ACTAGT 1 cut(s) 470
Sse9I AATT 4 cut(s) 282, 485, 507, 1088
SsiI CCGC 1 cut(s) 16
SspI AATATT 1 cut(s) 403
SspMI CTAG 1 cut(s) 471
StyD4I CCNGG 6 cut(s) 47, 277, 685, 772, 1005, 1034
StyI CCWWGG 1 cut(s) 997
TaaI ACNGT 4 cut(s) 10, 44, 379, 969
TaiI ACGT 1 cut(s) 1051
TaqI TCGA 1 cut(s) 960
TasI AATT 4 cut(s) 282, 485, 507, 1088
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 4 cut(s) 874, 962, 988, 1040
Tru1I TTAA 3 cut(s) 387, 417, 657
Tru9I TTAA 3 cut(s) 387, 417, 657
TscAI CASTG 5 cut(s) 13, 25, 49, 340, 974
TseFI GTSAC 3 cut(s) 737, 785, 1049
TseI GCWGC 3 cut(s) 113, 410, 809
Tsp45I GTSAC 3 cut(s) 737, 785, 1049
TspDTI ATGAA 8 cut(s) 82, 225, 498, 500, 586, 621, 957, 968
TspRI CASTG 5 cut(s) 13, 25, 49, 340, 974
VspI ATTAAT 1 cut(s) 387
XapI RAATTY 2 cut(s) 485, 1088
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 1 cut(s) 471
ZrmI AGTACT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.