RchiOBHm_Chr5g0058671

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002168
Physical Location & Seq
Forward (+)
63277521 .. 63282920
5400 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33529

Sequence Viewer

Length: 1128 bp
ATGGGCACTGTAAACCGCAGTGGGGTTAGAAAAACAAATGACAGTGCCAGGGTCATTTTCTATACAAGTGTTGGACTTCTCTTTGGATTTTTCATTGGTGTATCATTGCAGGCAGCTTTTCTAACAAAGGTTAGGTTTTCACTTCCATCTTTTGATGTATACTTTCCCGGAACAACTAACACAAACAAAAGTCTTGAGGATGAAGGATCAGAGGGTGTTCCTAAGATATATGTTCCAACAAATCCTTCTGGTGCTGAAACGCTACCACCAGGAATTGTTGTTTCACAAACTGATTTGTATATGCGCAGATTATGGGGTGAACCCAGTGAGGATCTAAAAACAAAGCCAAAGTACTTGGTAACATTTACCGTTGGTATTAATCAGAAGAAAAATATTGATGCAGCAGTTAAAAAGTTCTCTGAGGATTTCACTATCTTGCTTTTTCACTATGATGGCCGGACTAGTGAATGGGATGAATTTGAGTGGTCAAAGAGAGCAATTCATGTTAGTGCAAAGAGACAAGCAAAGTGGTGGTATGCAAAAAGATTTCTGCATCCTGATGTTGTGTCAGCTTATGATTATATATTCATTTGGGATGAAGATTTGGGGGTAGAACACTTCAATGCAGAGAAGTATATTCAGTTGGTTAAGAAATATGGTTTGGAAATCTCTCAACCTGGTCTTGAGCCCAATAATGGTTTGACATGGGAGATGACAAAGAGGAGAGGTGACAGAGAAGTCCACAAGGATACAGAAGAAAAACCGGGCTGGTGTAGTGACCCACATCTTCCCCCTTGTGCAGCGTTTGTGGAAATAATGGCCCCTGTCTTTTCTCGGGAAGCTTGGCGTTGTGTATGGCATATGATTCAGAATGATTTGGTGCATGGATGGGGATTGGATTTTGCTCTCCGAAGATGTGTAGAGCCTGCACATGAAAAGATTGGCGTGGTTGATTCACAGTGGATTGTTCATCAAGTGATTCCTTCCCTTGGGAGCCAGGGAGAGTCTGAAGATGGAAAATCGCCCTGGGAATCGGTGAGATCAAGGTGCAAAAACGAATGGGCTGAATTCCAGTCTCGCATACTCGGTGCAGACAAGGCATACCTTGCTAAGAGGGGAAGGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

375

Amino Acids

42.88

Weight (kDa)

6.81

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 80 - 366 2.1e-140 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 737
Acc16I TGCGCA 1 cut(s) 305
AccI GTMKAC 1 cut(s) 159
AciI CCGC 1 cut(s) 16
AclWI GGATC 2 cut(s) 214, 339
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 2 cut(s) 476, 1067
AcuI CTGAAG 1 cut(s) 1029
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 3 cut(s) 22, 695, 989
AgsI TTSAA 1 cut(s) 622
AhlI ACTAGT 1 cut(s) 461
AjnI CCWGG 5 cut(s) 47, 268, 676, 996, 1025
AjuI GAANNNNNNNTTGG 4 cut(s) 229, 261, 644, 676
AluBI AGCT 3 cut(s) 116, 572, 842
AluI AGCT 3 cut(s) 116, 572, 842
Alw26I GTCTC 2 cut(s) 511, 1080
AlwI GGATC 2 cut(s) 214, 339
Ama87I CYCGRG 1 cut(s) 834
AoxI GGCC 2 cut(s) 454, 819
ApeKI GCWGC 3 cut(s) 113, 401, 800
ApoI RAATTY 2 cut(s) 476, 1067
AseI ATTAAT 1 cut(s) 378
AspLEI GCGC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 820
AsuC2I CCSGG 2 cut(s) 168, 765
AsuHPI GGTGA 3 cut(s) 329, 740, 1048
AvaI CYCGRG 1 cut(s) 834
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 690
BbvI GCAGC 3 cut(s) 125, 413, 812
BccI CCATC 4 cut(s) 154, 446, 882, 1007
BciT130I CCWGG 5 cut(s) 49, 270, 678, 998, 1027
BciVI GTATCC 1 cut(s) 742
BcnI CCSGG 2 cut(s) 168, 765
BcoDI GTCTC 2 cut(s) 511, 1080
BcuI ACTAGT 1 cut(s) 461
BfaI CTAG 1 cut(s) 462
BfuI GTATCC 1 cut(s) 742
BisI GCNGC 3 cut(s) 114, 402, 801
BlsI GCNGC 3 cut(s) 115, 403, 802
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 7 cut(s) 49, 168, 270, 678, 765, 998, 1027
BmeT110I CYCGRG 1 cut(s) 834
BmgT120I GGNCC 1 cut(s) 820
BmiI GGNNCC 2 cut(s) 822, 995
BmrFI CCNGG 7 cut(s) 49, 168, 270, 678, 765, 998, 1027
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 2 cut(s) 388, 562
BmuI ACTGGG 1 cut(s) 318
BpuEI CTTGAG 2 cut(s) 215, 704
BpuMI CCSGG 2 cut(s) 168, 765
BsaJI CCNNGG 5 cut(s) 48, 988, 997, 1025, 1026
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 695, 989
Bse1I ACTGG 2 cut(s) 324, 1072
Bse3DI GCAATG 1 cut(s) 104
BseBI CCWGG 5 cut(s) 49, 270, 678, 998, 1027
BseDI CCNNGG 5 cut(s) 48, 988, 997, 1025, 1026
BseGI GGATG 5 cut(s) 205, 478, 553, 601, 893
BseLI CCNNNNNNNGG 3 cut(s) 22, 695, 989
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 2 cut(s) 324, 1072
BseRI GAGGAG 1 cut(s) 736
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 3 cut(s) 125, 413, 812
BsgI GTGCAG 3 cut(s) 819, 912, 1110
BshFI GGCC 2 cut(s) 456, 821
BsiHKCI CYCGRG 1 cut(s) 834
BsiSI CCGG 3 cut(s) 168, 457, 764
BslI CCNNNNNNNGG 3 cut(s) 22, 695, 989
BsmAI GTCTC 2 cut(s) 511, 1080
BsnI GGCC 2 cut(s) 456, 821
BsoBI CYCGRG 1 cut(s) 834
Bsp1286I GDGCHC 2 cut(s) 8, 690
Bsp143I GATC 3 cut(s) 206, 331, 1040
BspACI CCGC 1 cut(s) 16
BspANI GGCC 2 cut(s) 456, 821
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 822, 995
BspPI GGATC 2 cut(s) 214, 339
BsrDI GCAATG 1 cut(s) 104
BsrI ACTGG 2 cut(s) 324, 1072
BssECI CCNNGG 5 cut(s) 48, 988, 997, 1025, 1026
BssMI GATC 3 cut(s) 206, 331, 1040
BssNAI GTATAC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 988
Bst1107I GTATAC 1 cut(s) 160
Bst2UI CCWGG 5 cut(s) 49, 270, 678, 998, 1027
Bst4CI ACNGT 4 cut(s) 10, 44, 370, 960
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstC8I GCNNGC 2 cut(s) 111, 927
BstDEI CTNAG 3 cut(s) 222, 420, 1110
BstF5I GGATG 5 cut(s) 205, 478, 553, 601, 893
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 3 cut(s) 209, 334, 1043
BstMAI GTCTC 2 cut(s) 511, 1080
BstMBI GATC 3 cut(s) 206, 331, 1040
BstMWI GCNNNNNNNGC 2 cut(s) 1097, 1106
BstNI CCWGG 5 cut(s) 49, 270, 678, 998, 1027
BstSCI CCNGG 7 cut(s) 47, 166, 268, 676, 763, 996, 1025
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 3 cut(s) 125, 413, 812
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BstZ17I GTATAC 1 cut(s) 160
BsuI GTATCC 1 cut(s) 742
BsuRI GGCC 2 cut(s) 456, 821
BtsCI GGATG 5 cut(s) 205, 478, 553, 601, 893
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 5 cut(s) 6, 25, 49, 331, 965
Cac8I GCNNGC 2 cut(s) 111, 927
CfoI GCGC 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 820
CsiI ACCWGGT 1 cut(s) 676
Csp6I GTAC 1 cut(s) 352
CspCI CAANNNNNGTGG 2 cut(s) 509, 544
CviAII CATG 4 cut(s) 503, 705, 884, 932
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 3 cut(s) 222, 420, 1110
DpnI GATC 3 cut(s) 208, 333, 1042
DpnII GATC 3 cut(s) 206, 331, 1040
DrdI GACNNNNNNGTC 1 cut(s) 737
DseDI GACNNNNNNGTC 1 cut(s) 737
EaeI YGGCCR 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 988
Eco24I GRGCYC 1 cut(s) 690
Eco57I CTGAAG 1 cut(s) 1029
Eco88I CYCGRG 1 cut(s) 834
EcoRI GAATTC 1 cut(s) 1067
EcoRII CCWGG 5 cut(s) 47, 268, 676, 996, 1025
EcoT14I CCWWGG 1 cut(s) 988
EcoT38I GRGCYC 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 988
FaeI CATG 4 cut(s) 506, 708, 887, 935
FatI CATG 4 cut(s) 502, 704, 883, 931
FauNDI CATATG 1 cut(s) 861
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 114, 402, 801
FokI GGATG 5 cut(s) 212, 485, 540, 608, 900
FriOI GRGCYC 1 cut(s) 690
Fsp4HI GCNGC 3 cut(s) 114, 402, 801
FspBI CTAG 1 cut(s) 462
FspI TGCGCA 1 cut(s) 305
GlaI GCGC 1 cut(s) 305
GluI GCNGC 3 cut(s) 114, 402, 801
HaeIII GGCC 2 cut(s) 456, 821
HapII CCGG 3 cut(s) 168, 457, 764
HhaI GCGC 1 cut(s) 306
Hin1II CATG 4 cut(s) 506, 708, 887, 935
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 840
HinfI GANTC 5 cut(s) 865, 953, 979, 1004, 1031
HpaII CCGG 3 cut(s) 168, 457, 764
HphI GGTGA 3 cut(s) 329, 740, 1048
Hpy166II GTNNAC 4 cut(s) 13, 160, 320, 742
Hpy188I TCNGA 6 cut(s) 211, 384, 421, 870, 911, 1009
Hpy188III TCNNGA 4 cut(s) 194, 557, 683, 836
Hpy8I GTNNAC 4 cut(s) 13, 160, 320, 742
HpyAV CCTTC 4 cut(s) 197, 255, 993, 1113
HpyCH4III ACNGT 4 cut(s) 10, 44, 370, 960
HpyF10VI GCNNNNNNNGC 2 cut(s) 1097, 1106
HpyF3I CTNAG 3 cut(s) 222, 420, 1110
Hsp92II CATG 4 cut(s) 506, 708, 887, 935
HspAI GCGC 1 cut(s) 304
Kzo9I GATC 3 cut(s) 206, 331, 1040
LmnI GCTCC 1 cut(s) 993
Lsp1109I GCAGC 3 cut(s) 125, 413, 812
LweI GCATC 2 cut(s) 388, 562
MabI ACCWGGT 1 cut(s) 676
MaeI CTAG 1 cut(s) 462
MaeIII GTNAC 3 cut(s) 358, 728, 776
MalI GATC 3 cut(s) 208, 333, 1042
MboI GATC 3 cut(s) 206, 331, 1040
MboII GAAGA 6 cut(s) 397, 611, 767, 779, 924, 1022
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 2 cut(s) 8, 690
MluCI AATT 4 cut(s) 273, 476, 498, 1067
MlyI GAGTC 1 cut(s) 1013
MmeI TCCRAC 2 cut(s) 52, 260
MnlI CCTC 7 cut(s) 190, 205, 322, 415, 714, 719, 1107
MseI TTAA 3 cut(s) 378, 408, 648
MslI CAYNNNNRTG 4 cut(s) 450, 507, 558, 621
MspI CCGG 3 cut(s) 168, 457, 764
MspR9I CCNGG 7 cut(s) 49, 168, 270, 678, 765, 998, 1027
MvaI CCWGG 5 cut(s) 49, 270, 678, 998, 1027
MwoI GCNNNNNNNGC 2 cut(s) 1097, 1106
NciI CCSGG 2 cut(s) 168, 765
NdeI CATATG 1 cut(s) 861
NdeII GATC 3 cut(s) 206, 331, 1040
NlaIII CATG 4 cut(s) 506, 708, 887, 935
NlaIV GGNNCC 2 cut(s) 822, 995
NmuCI GTSAC 2 cut(s) 728, 776
NsbI TGCGCA 1 cut(s) 305
PasI CCCWGGG 1 cut(s) 1026
PfeI GAWTC 4 cut(s) 865, 953, 979, 1031
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 3 cut(s) 115, 403, 802
PleI GAGTC 1 cut(s) 1012
PpsI GAGTC 1 cut(s) 1012
PshBI ATTAAT 1 cut(s) 378
Psp6I CCWGG 5 cut(s) 47, 268, 676, 996, 1025
PspGI CCWGG 5 cut(s) 47, 268, 676, 996, 1025
PspN4I GGNNCC 2 cut(s) 822, 995
PspPI GGNCC 1 cut(s) 820
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 4 cut(s) 450, 507, 558, 621
SaqAI TTAA 3 cut(s) 378, 408, 648
SatI GCNGC 3 cut(s) 114, 402, 801
Sau3AI GATC 3 cut(s) 206, 331, 1040
Sau96I GGNCC 1 cut(s) 820
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 1 cut(s) 1013
ScrFI CCNGG 7 cut(s) 49, 168, 270, 678, 765, 998, 1027
SduI GDGCHC 2 cut(s) 8, 690
SetI ASST 9 cut(s) 118, 132, 137, 574, 679, 730, 844, 1049, 1107
SexAI ACCWGGT 1 cut(s) 676
SfaNI GCATC 2 cut(s) 388, 562
SmiMI CAYNNNNRTG 4 cut(s) 450, 507, 558, 621
SmlI CTYRAG 2 cut(s) 194, 683
SmoI CTYRAG 2 cut(s) 194, 683
SpeI ACTAGT 1 cut(s) 461
Sse9I AATT 4 cut(s) 273, 476, 498, 1067
SsiI CCGC 1 cut(s) 16
SspI AATATT 1 cut(s) 394
SspMI CTAG 1 cut(s) 462
StyD4I CCNGG 7 cut(s) 47, 166, 268, 676, 763, 996, 1025
StyI CCWWGG 1 cut(s) 988
TaaI ACNGT 4 cut(s) 10, 44, 370, 960
TasI AATT 4 cut(s) 273, 476, 498, 1067
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 4 cut(s) 865, 953, 979, 1031
Tru1I TTAA 3 cut(s) 378, 408, 648
Tru9I TTAA 3 cut(s) 378, 408, 648
TscAI CASTG 5 cut(s) 13, 25, 49, 331, 965
TseFI GTSAC 2 cut(s) 728, 776
TseI GCWGC 3 cut(s) 113, 401, 800
Tsp45I GTSAC 2 cut(s) 728, 776
TspDTI ATGAA 8 cut(s) 82, 216, 489, 491, 577, 612, 948, 959
TspRI CASTG 5 cut(s) 13, 25, 49, 331, 965
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 2 cut(s) 476, 1067
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 1 cut(s) 462
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.