MD11G1138600.v1.1

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002168
Physical Location & Seq
Reverse (-)
12749992 .. 12756179
6188 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1138600.v1.1.491

Sequence Viewer

Length: 1176 bp
ATGGGCACTGTACACCGCAGCGGGGTTAAAAAATCGAATGACAGTGCCAAGCTTATTTTCACTACAAGTTTGGGAGTTGTCTTTGGATTTTTCCTTGGTGTATCATTACCGTCAGTTTCTTTAAACAAGATTAGGTTACCTTCAAGCCTTATAACATCTCTTGATGTAGCCTTCACCCAATTGCGTAGACCTAGTACTCCCCCTTCAAACAAGAGTCTTGAAGATGAAGGATCAGAGGGTGTCCCTCAGATATATGTTCCAACAAACCCGCGTGGTGCGGAAACACTACCTCCAGGAATTATTGTTCCTAAATCTGATCTTTATATCCGGAGATTGTGGGGTGAACCCAGTGAGGATCTGAAAGTAACGCCAAAGTATTTGGTATCATTTACTGTTGGTATAAACCAGAAAAAGAATATTGATGCAGCCGTTAAAAAGGTTGAAAAATGTTTCTCCGAGAACTTCACAATATTACTCTTTCACTATGATGGCCGGACTAGTGAGTGGGAGGAGTTTGAGTGGTCAAAGAGGGCAATTCATGTTAGTGTGAAGAGACAAGCAAAATGGTGGTACGCAAAGAGATTTTTGCATCCTGATATCGTAGCAACTTATGAATATATTTTCATTTGGGATGAAGATTTGGGAGTAGAACATTTCAATGGAGAGAAATATATACATTTGGTCAAGAAATATGGTTTGGAGATCTCTCAACCTGGTCTTGAGCCCAATAATGGACTGACATGGGAGATGACAAAGAGGAGAGGTGACAGAGAAGTTCACAAGGATACTGAAGAGAAACCAGGCTGGTGTAGTGACCCACATCTTCCTCCTTGTGCTGCATTTGTGGAAATAATGGCCCCTGTCTTTTCTCGGGAAGCTTGGCGTTGTGCATGGCATATGATTCAGAATGATTTAGTGCATGGATGGGGATTGGATTTTGCTCTCAGAAGATGTGTAGAGCCTGCACATGAAAAGATTGGTGTAGTTGATTCACAGTGGATTATTCATCAAGTAATTCCTTCTCTTGGGGGCCAGGGAAATCAGGAGGATGGAAAAGCTCCATGGGAAGGGGTACGTGATATGGTGAGAACAAGGTGCAAAAATGAGTGGGCTGAATTTCAGGCTCGCCTCCTTGGCGCAGACCAGGCATACCTTGCTCAGAAAGGAAGGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

392

Amino Acids

44.5

Weight (kDa)

7.67

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 88 - 381 1.5e-136 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AccI GTMKAC 1 cut(s) 187
AccII CGCG 1 cut(s) 271
AccIII TCCGGA 1 cut(s) 327
AciI CCGC 4 cut(s) 16, 21, 269, 278
AclWI GGATC 2 cut(s) 238, 363
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 1 cut(s) 1115
AcuI CTGAAG 1 cut(s) 810
AfaI GTAC 4 cut(s) 12, 196, 572, 1074
AfiI CCNNNNNNNGG 4 cut(s) 22, 731, 1025, 1067
AgsI TTSAA 5 cut(s) 144, 207, 221, 443, 658
AhlI ACTAGT 1 cut(s) 497
AjnI CCWGG 5 cut(s) 292, 712, 799, 1032, 1143
AjuI GAANNNNNNNTTGG 4 cut(s) 41, 73, 680, 712
AloI GAACNNNNNNTCC 2 cut(s) 288, 320
AluBI AGCT 3 cut(s) 52, 878, 1058
AluI AGCT 3 cut(s) 52, 878, 1058
Alw26I GTCTC 1 cut(s) 547
AlwI GGATC 2 cut(s) 238, 363
Ama87I CYCGRG 1 cut(s) 870
Aor13HI TCCGGA 1 cut(s) 327
AoxI GGCC 3 cut(s) 490, 855, 1030
ApeKI GCWGC 3 cut(s) 18, 425, 836
ApoI RAATTY 1 cut(s) 1115
AspLEI GCGC 1 cut(s) 1139
AspS9I GGNCC 2 cut(s) 856, 1030
AsuHPI GGTGA 4 cut(s) 166, 353, 776, 1096
AvaI CYCGRG 1 cut(s) 870
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 726
BarI GAAGNNNNNNTAC 2 cut(s) 187, 219
BbvI GCAGC 3 cut(s) 30, 437, 823
BccI CCATC 3 cut(s) 482, 918, 1043
BceAI ACGGC 1 cut(s) 413
BciT130I CCWGG 5 cut(s) 294, 714, 801, 1034, 1145
BciVI GTATCC 1 cut(s) 778
BcoDI GTCTC 1 cut(s) 547
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 2 cut(s) 192, 498
BfuI GTATCC 1 cut(s) 778
BglI GCCNNNNNGGC 1 cut(s) 1134
BglII AGATCT 1 cut(s) 702
BisI GCNGC 3 cut(s) 19, 426, 837
BlsI GCNGC 3 cut(s) 20, 427, 838
BmcAI AGTACT 1 cut(s) 196
Bme1390I CCNGG 5 cut(s) 294, 714, 801, 1034, 1145
BmeT110I CYCGRG 1 cut(s) 870
BmgT120I GGNCC 2 cut(s) 856, 1030
BmiI GGNNCC 2 cut(s) 858, 1031
BmrFI CCNGG 5 cut(s) 294, 714, 801, 1034, 1145
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 2 cut(s) 412, 598
BmuI ACTGGG 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 740
BsaAI YACGTR 1 cut(s) 1076
BsaJI CCNNGG 4 cut(s) 94, 1033, 1061, 1132
BsaWI WCCGGW 1 cut(s) 327
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 503, 533
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 731, 1025, 1067
Bse1I ACTGG 1 cut(s) 348
BseAI TCCGGA 1 cut(s) 327
BseBI CCWGG 5 cut(s) 294, 714, 801, 1034, 1145
BseDI CCNNGG 4 cut(s) 94, 1033, 1061, 1132
BseGI GGATG 4 cut(s) 589, 637, 929, 1054
BseLI CCNNNNNNNGG 4 cut(s) 22, 731, 1025, 1067
BseMII CTCAG 3 cut(s) 260, 958, 1172
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 2 cut(s) 524, 772
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 3 cut(s) 30, 437, 823
BsgI GTGCAG 1 cut(s) 948
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 3 cut(s) 492, 857, 1032
BsiHKCI CYCGRG 1 cut(s) 870
BsiSI CCGG 2 cut(s) 328, 493
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 4 cut(s) 22, 731, 1025, 1067
BsmAI GTCTC 1 cut(s) 547
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 3 cut(s) 492, 857, 1032
BsoBI CYCGRG 1 cut(s) 870
Bsp1286I GDGCHC 2 cut(s) 8, 726
Bsp13I TCCGGA 1 cut(s) 327
Bsp1407I TGTACA 1 cut(s) 10
Bsp143I GATC 4 cut(s) 230, 316, 355, 702
Bsp19I CCATGG 1 cut(s) 1061
BspACI CCGC 4 cut(s) 16, 21, 269, 278
BspANI GGCC 3 cut(s) 492, 857, 1032
BspCNI CTCAG 3 cut(s) 259, 957, 1171
BspEI TCCGGA 1 cut(s) 327
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 858, 1031
BspPI GGATC 2 cut(s) 238, 363
BsrGI TGTACA 1 cut(s) 10
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 4 cut(s) 94, 1033, 1061, 1132
BssMI GATC 4 cut(s) 230, 316, 355, 702
BssT1I CCWWGG 3 cut(s) 94, 1061, 1132
Bst2UI CCWGG 5 cut(s) 294, 714, 801, 1034, 1145
Bst4CI ACNGT 5 cut(s) 10, 44, 111, 394, 996
Bst6I CTCTTC 2 cut(s) 545, 786
BstAPI GCANNNNNTGC 1 cut(s) 1154
BstAUI TGTACA 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 1076
BstC8I GCNNGC 2 cut(s) 963, 1126
BstDEI CTNAG 3 cut(s) 246, 944, 1158
BstDSI CCRYGG 1 cut(s) 1061
BstEII GGTNACC 1 cut(s) 135
BstF5I GGATG 4 cut(s) 589, 637, 929, 1054
BstFNI CGCG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 1139
BstKTI GATC 4 cut(s) 233, 319, 358, 705
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 4 cut(s) 230, 316, 355, 702
BstMWI GCNNNNNNNGC 3 cut(s) 1134, 1145, 1154
BstNI CCWGG 5 cut(s) 294, 714, 801, 1034, 1145
BstPI GGTNACC 1 cut(s) 135
BstSCI CCNGG 5 cut(s) 292, 712, 799, 1032, 1143
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 3 cut(s) 30, 437, 823
BstX2I RGATCY 2 cut(s) 355, 702
BstYI RGATCY 2 cut(s) 355, 702
BsuI GTATCC 1 cut(s) 778
BsuRI GGCC 3 cut(s) 492, 857, 1032
BtgI CCRYGG 1 cut(s) 1061
BtsCI GGATG 4 cut(s) 589, 637, 929, 1054
BtsIMutI CAGTG 4 cut(s) 6, 49, 355, 1001
Cac8I GCNNGC 2 cut(s) 963, 1126
CfoI GCGC 1 cut(s) 1139
Cfr13I GGNCC 2 cut(s) 856, 1030
CsiI ACCWGGT 1 cut(s) 712
Csp6I GTAC 4 cut(s) 11, 195, 571, 1073
CviAII CATG 6 cut(s) 539, 741, 891, 920, 968, 1062
CviQI GTAC 4 cut(s) 11, 195, 571, 1073
DdeI CTNAG 3 cut(s) 246, 944, 1158
DpnI GATC 4 cut(s) 232, 318, 357, 704
DpnII GATC 4 cut(s) 230, 316, 355, 702
DraI TTTAAA 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 545, 786
EarI CTCTTC 2 cut(s) 545, 786
Eco130I CCWWGG 3 cut(s) 94, 1061, 1132
Eco24I GRGCYC 1 cut(s) 726
Eco32I GATATC 1 cut(s) 598
Eco57I CTGAAG 1 cut(s) 810
Eco88I CYCGRG 1 cut(s) 870
Eco91I GGTNACC 1 cut(s) 135
EcoO65I GGTNACC 1 cut(s) 135
EcoRII CCWGG 5 cut(s) 292, 712, 799, 1032, 1143
EcoRV GATATC 1 cut(s) 598
EcoT14I CCWWGG 3 cut(s) 94, 1061, 1132
EcoT38I GRGCYC 1 cut(s) 726
ErhI CCWWGG 3 cut(s) 94, 1061, 1132
FaeI CATG 6 cut(s) 542, 744, 894, 923, 971, 1065
FaqI GGGAC 1 cut(s) 227
FatI CATG 6 cut(s) 538, 740, 890, 919, 967, 1061
FauI CCCGC 2 cut(s) 14, 276
FauNDI CATATG 1 cut(s) 897
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 19, 426, 837
FokI GGATG 4 cut(s) 576, 644, 936, 1061
FriOI GRGCYC 1 cut(s) 726
Fsp4HI GCNGC 3 cut(s) 19, 426, 837
FspBI CTAG 2 cut(s) 192, 498
GlaI GCGC 1 cut(s) 1138
GluI GCNGC 3 cut(s) 19, 426, 837
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 3 cut(s) 492, 857, 1032
HapII CCGG 2 cut(s) 328, 493
HhaI GCGC 1 cut(s) 1139
Hin1II CATG 6 cut(s) 542, 744, 894, 923, 971, 1065
Hin6I GCGC 1 cut(s) 1137
HinP1I GCGC 1 cut(s) 1137
HindIII AAGCTT 2 cut(s) 50, 876
HinfI GANTC 3 cut(s) 214, 901, 989
HpaII CCGG 2 cut(s) 328, 493
HphI GGTGA 4 cut(s) 166, 353, 776, 1096
Hpy166II GTNNAC 4 cut(s) 13, 188, 344, 778
Hpy188I TCNGA 8 cut(s) 235, 249, 316, 360, 457, 906, 947, 1161
Hpy188III TCNNGA 8 cut(s) 161, 218, 328, 593, 685, 719, 872, 1043
Hpy8I GTNNAC 4 cut(s) 13, 188, 344, 778
HpyAV CCTTC 7 cut(s) 150, 181, 213, 221, 1029, 1061, 1161
HpyCH4III ACNGT 5 cut(s) 10, 44, 111, 394, 996
HpyCH4IV ACGT 1 cut(s) 1075
HpyCH4V TGCA 7 cut(s) 425, 589, 839, 890, 919, 965, 1098
HpyF10VI GCNNNNNNNGC 3 cut(s) 1134, 1145, 1154
HpyF3I CTNAG 3 cut(s) 246, 944, 1158
HpySE526I ACGT 1 cut(s) 1075
Hsp92II CATG 6 cut(s) 542, 744, 894, 923, 971, 1065
HspAI GCGC 1 cut(s) 1137
Kpn2I TCCGGA 1 cut(s) 327
Kzo9I GATC 4 cut(s) 230, 316, 355, 702
LmnI GCTCC 1 cut(s) 1063
Lsp1109I GCAGC 3 cut(s) 30, 437, 823
LweI GCATC 2 cut(s) 412, 598
MabI ACCWGGT 1 cut(s) 712
MaeI CTAG 2 cut(s) 192, 498
MaeII ACGT 1 cut(s) 1075
MaeIII GTNAC 4 cut(s) 135, 364, 764, 812
MalI GATC 4 cut(s) 232, 318, 357, 704
MboI GATC 4 cut(s) 230, 316, 355, 702
MboII GAAGA 6 cut(s) 233, 562, 647, 803, 815, 960
MfeI CAATTG 1 cut(s) 179
MflI RGATCY 2 cut(s) 355, 702
MhlI GDGCHC 2 cut(s) 8, 726
MluCI AATT 5 cut(s) 179, 297, 534, 1014, 1115
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 284
MroI TCCGGA 1 cut(s) 327
MseI TTAA 3 cut(s) 27, 122, 432
MslI CAYNNNNRTG 3 cut(s) 486, 543, 657
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 2 cut(s) 328, 493
MspR9I CCNGG 5 cut(s) 294, 714, 801, 1034, 1145
MunI CAATTG 1 cut(s) 179
MvaI CCWGG 5 cut(s) 294, 714, 801, 1034, 1145
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 3 cut(s) 1134, 1145, 1154
NcoI CCATGG 1 cut(s) 1061
NdeI CATATG 1 cut(s) 897
NdeII GATC 4 cut(s) 230, 316, 355, 702
NlaIII CATG 6 cut(s) 542, 744, 894, 923, 971, 1065
NlaIV GGNNCC 2 cut(s) 858, 1031
NmuCI GTSAC 2 cut(s) 764, 812
PfeI GAWTC 2 cut(s) 901, 989
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 3 cut(s) 20, 427, 838
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Ppu21I YACGTR 1 cut(s) 1076
PsiI TTATAA 1 cut(s) 152
Psp6I CCWGG 5 cut(s) 292, 712, 799, 1032, 1143
PspEI GGTNACC 1 cut(s) 135
PspGI CCWGG 5 cut(s) 292, 712, 799, 1032, 1143
PspN4I GGNNCC 2 cut(s) 858, 1031
PspPI GGNCC 2 cut(s) 856, 1030
PsuI RGATCY 2 cut(s) 355, 702
RsaI GTAC 4 cut(s) 12, 196, 572, 1074
RsaNI GTAC 4 cut(s) 11, 195, 571, 1073
RseI CAYNNNNRTG 3 cut(s) 486, 543, 657
SaqAI TTAA 3 cut(s) 27, 122, 432
SatI GCNGC 3 cut(s) 19, 426, 837
Sau3AI GATC 4 cut(s) 230, 316, 355, 702
Sau96I GGNCC 2 cut(s) 856, 1030
ScaI AGTACT 1 cut(s) 196
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 5 cut(s) 294, 714, 801, 1034, 1145
SduI GDGCHC 2 cut(s) 8, 726
SexAI ACCWGGT 1 cut(s) 712
SfaNI GCATC 2 cut(s) 412, 598
SmiMI CAYNNNNRTG 3 cut(s) 486, 543, 657
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
SpeI ACTAGT 1 cut(s) 497
Sse9I AATT 5 cut(s) 179, 297, 534, 1014, 1115
SsiI CCGC 4 cut(s) 16, 21, 269, 278
SspI AATATT 2 cut(s) 418, 471
SspMI CTAG 2 cut(s) 192, 498
StyD4I CCNGG 5 cut(s) 292, 712, 799, 1032, 1143
StyI CCWWGG 3 cut(s) 94, 1061, 1132
TaaI ACNGT 5 cut(s) 10, 44, 111, 394, 996
TaiI ACGT 1 cut(s) 1078
TaqI TCGA 1 cut(s) 35
TasI AATT 5 cut(s) 179, 297, 534, 1014, 1115
TatI WGTACW 2 cut(s) 10, 194
TfiI GAWTC 2 cut(s) 901, 989
Tru1I TTAA 3 cut(s) 27, 122, 432
Tru9I TTAA 3 cut(s) 27, 122, 432
TscAI CASTG 4 cut(s) 13, 49, 355, 1001
TseFI GTSAC 2 cut(s) 764, 812
TseI GCWGC 3 cut(s) 18, 425, 836
Tsp45I GTSAC 2 cut(s) 764, 812
TspDTI ATGAA 7 cut(s) 240, 527, 613, 627, 648, 984, 995
TspRI CASTG 4 cut(s) 13, 49, 355, 1001
XapI RAATTY 1 cut(s) 1115
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 2 cut(s) 192, 498
ZrmI AGTACT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.