Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002168

Physical Location & Seq

Genomic Coordinates Reverse (-)

7253773 .. 7259789

Gene Structure 6017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G103700.18

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGTCACTGTACATCGTAGTGGGGTTGGTAAAAAATCAAATGACAGTGCCAGGCTAATTTTCACTACGACATTGGGAGCTGTCTTTGGATTTTTCATTGGCGTATCATTACCGGCAGTTTCTCTAACCAAGATTAGGTTTCCGTCAAGCATTATAACATCTCTTGATGTAGCCTTCACCGAATTACGAAGACCTAATCCTCCTCCAAACAGAAGTCTTGAAGATGAAGGATCAGAGGGTGTCCCTAAGATATACGTTCCAACAAACCCTCGTGGTGCAGAAACACTACCTCCTGGAATTATTGTTCCACAATCTGATCTTTATCTGCGTAGATTATGGGGTGAACCCAGTGCGGATCTGAAAACAACGCCTAAGTACTTGGTATCATTTACAGTTGGTATTAATCAGAAAAAAAATATTGATGCAGCAGTAAAAAAGTTCTCTGAGAACTTCGCAATCTTGCTTTTTCACTATGATGGTCGGACTAGTGAATGGGATGAGTTTGAGTGGTCAAAGAGGGCAATTCATGTTAGTGTGAAGAGACAAGCAAAATGGTGGTATGCAAAAAGGTTTTTGCATCCTGATATCGTAGCAGCTTATGAATATATTTTCATTTGGGATGAAGATTTGGGAGTTGAGCACTTCGATGGAGAGAAGTATATTCAGTTGGTCAAGAAATATGGTTTGGAGATCTCTCAACCTGGTCTTGAGCCCAATAATGGACTGACATGGGAGATGACAAAGAGGAGAGGTGACAGAGAAGCTCACAAGGATACAGAAGAAAAACCGGGCTGGTGTAGTGACCCACATCTCCCTCCATGTGCTGCATTTGTGGAAATAATGGCCCCGGTTTTTTCTCGGGAAGCTTGGCGGTGTGCATGGCATTTGATTCAGAATGATTTAGTGCATGGATGGGGATTGGATTTTGCTCTCAGAAGATGTGTAGAGCCTGCACATGAAAAGATTGGCGTAGTTGATTCACAGTGGATTGTTCACCAAGTAATTCCTTCTCTTGGGAGCCAGGGAGATCCTGAGGATGGAAAAGCTCCATGGGAAGGGGTACGTGACATGGTAAGAACAAGGTGCAAAAATGAGTGGGCTGAATTCCAGGCTCGCCTCCTCGGCGCAGACCAGGCATACCTTTCTCAGAGAGGAAGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

388

Amino Acids

43.97

Weight (kDa)

6.84

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08040 AT1G08040 AT1G08040 AT1G08040 AT2G28310 AT2G28310 AT2G28310
fragaria_vesca	FvH4_3g31900 FvH4_3g31900 FvH4_3g31900 FvH4_3g31900 FvH4_3g31900
malus_domestica	MD03G1120300.v1.1 MD11G1138600.v1.1
prunus_persica	Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1 Prupe.6G103700_v2.0.a1
pyrus_communis	pycom11g11440
rosa_chinensis	RchiOBHm_Chr5g0058671
rosa_laevigata	RLG00000035239
rosa_roxburghii	Rroxscaffold_1G00021750
rosa_rugosa	Rorug05G0317200 Rorug05G0317300 Rorug05G0317400 Rorug05G0317400 Rorug05G0317400
rosa_samantha	Rh5AG382900 Rh5BG394800 Rh5CG418600 Rh5DG410200
rosa_wichuraiana	Rw5G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	155
AciI	CCGC	2 cut(s)	353, 871
AclWI	GGATC	3 cut(s)	238, 363, 1022
AcsI	RAATTY	1 cut(s)	1103
AfaI	GTAC	3 cut(s)	12, 377, 1062
AfiI	CCNNNNNNNGG	5 cut(s)	135, 719, 1013, 1037, 1055
AgsI	TTSAA	1 cut(s)	221
AhlI	ACTAGT	1 cut(s)	485
AjnI	CCWGG	6 cut(s)	50, 292, 700, 1020, 1107, 1131
AjuI	GAANNNNNNNTTGG	2 cut(s)	668, 700
AloI	GAACNNNNNNTCC	2 cut(s)	288, 320
AluBI	AGCT	5 cut(s)	80, 596, 764, 866, 1046
AluI	AGCT	5 cut(s)	80, 596, 764, 866, 1046
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	3 cut(s)	238, 363, 1022
Ama87I	CYCGRG	1 cut(s)	858
AoxI	GGCC	1 cut(s)	843
ApeKI	GCWGC	3 cut(s)	425, 593, 824
ApoI	RAATTY	1 cut(s)	1103
AseI	ATTAAT	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	1127
AspS9I	GGNCC	1 cut(s)	844
AsuC2I	CCSGG	2 cut(s)	789, 848
AsuHPI	GGTGA	4 cut(s)	169, 353, 764, 986
AvaI	CYCGRG	1 cut(s)	858
AxyI	CCTNAGG	1 cut(s)	1032
BanII	GRGCYC	1 cut(s)	714
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	3 cut(s)	437, 605, 811
BccI	CCATC	4 cut(s)	470, 641, 906, 1031
BciT130I	CCWGG	6 cut(s)	52, 294, 702, 1022, 1109, 1133
BciVI	GTATCC	1 cut(s)	766
BcnI	CCSGG	2 cut(s)	789, 848
BcoDI	GTCTC	1 cut(s)	535
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	1 cut(s)	486
BfuI	GTATCC	1 cut(s)	766
BglI	GCCNNNNNGGC	1 cut(s)	1122
BglII	AGATCT	1 cut(s)	690
BisI	GCNGC	3 cut(s)	426, 594, 825
BlsI	GCNGC	3 cut(s)	427, 595, 826
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	8 cut(s)	52, 294, 702, 789, 848, 1022, 1109, 1133
BmeT110I	CYCGRG	1 cut(s)	858
BmgT120I	GGNCC	1 cut(s)	844
BmiI	GGNNCC	2 cut(s)	846, 1019
BmrFI	CCNGG	8 cut(s)	52, 294, 702, 789, 848, 1022, 1109, 1133
BmrI	ACTGGG	1 cut(s)	342
BmsI	GCATC	2 cut(s)	412, 586
BmuI	ACTGGG	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	728
BpuMI	CCSGG	2 cut(s)	789, 848
BsaAI	YACGTR	1 cut(s)	1064
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	4 cut(s)	846, 1021, 1049, 1120
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	5 cut(s)	135, 719, 1013, 1037, 1055
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	348
Bse21I	CCTNAGG	1 cut(s)	1032
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	6 cut(s)	52, 294, 702, 1022, 1109, 1133
BseDI	CCNNGG	4 cut(s)	846, 1021, 1049, 1120
BseGI	GGATG	5 cut(s)	502, 577, 625, 917, 1042
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	5 cut(s)	135, 719, 1013, 1037, 1055
BseMII	CTCAG	4 cut(s)	435, 946, 1023, 1160
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	3 cut(s)	192, 760, 1109
BseXI	GCAGC	3 cut(s)	437, 605, 811
BsgI	GTGCAG	2 cut(s)	297, 936
BshFI	GGCC	1 cut(s)	845
BsiHKAI	GWGCWC	1 cut(s)	642
BsiHKCI	CYCGRG	1 cut(s)	858
BsiSI	CCGG	3 cut(s)	113, 788, 848
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	5 cut(s)	135, 719, 1013, 1037, 1055
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	845
BsoBI	CYCGRG	1 cut(s)	858
Bsp1286I	GDGCHC	2 cut(s)	642, 714
Bsp1407I	TGTACA	1 cut(s)	10
Bsp143I	GATC	5 cut(s)	230, 316, 355, 690, 1027
Bsp19I	CCATGG	1 cut(s)	1049
BspACI	CCGC	2 cut(s)	353, 871
BspANI	GGCC	1 cut(s)	845
BspCNI	CTCAG	4 cut(s)	436, 945, 1024, 1159
BspLI	GGNNCC	2 cut(s)	846, 1019
BspPI	GGATC	3 cut(s)	238, 363, 1022
BsrFI	RCCGGY	1 cut(s)	112
BsrGI	TGTACA	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	348
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	4 cut(s)	846, 1021, 1049, 1120
BssMI	GATC	5 cut(s)	230, 316, 355, 690, 1027
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	1049
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	6 cut(s)	52, 294, 702, 1022, 1109, 1133
Bst4CI	ACNGT	4 cut(s)	10, 47, 394, 984
Bst6I	CTCTTC	1 cut(s)	533
BstAUI	TGTACA	1 cut(s)	10
BstBAI	YACGTR	1 cut(s)	1064
BstC8I	GCNNGC	2 cut(s)	951, 1114
BstDEI	CTNAG	6 cut(s)	246, 372, 444, 932, 1032, 1146
BstDSI	CCRYGG	1 cut(s)	1049
BstF5I	GGATG	5 cut(s)	502, 577, 625, 917, 1042
BstHHI	GCGC	1 cut(s)	1127
BstKTI	GATC	5 cut(s)	233, 319, 358, 693, 1030
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	5 cut(s)	230, 316, 355, 690, 1027
BstMWI	GCNNNNNNNGC	2 cut(s)	1122, 1133
BstNI	CCWGG	6 cut(s)	52, 294, 702, 1022, 1109, 1133
BstSCI	CCNGG	8 cut(s)	50, 292, 700, 787, 846, 1020, 1107, 1131
BstV1I	GCAGC	3 cut(s)	437, 605, 811
BstV2I	GAAGAC	1 cut(s)	196
BstX2I	RGATCY	3 cut(s)	355, 690, 1027
BstYI	RGATCY	3 cut(s)	355, 690, 1027
Bsu36I	CCTNAGG	1 cut(s)	1032
BsuI	GTATCC	1 cut(s)	766
BsuRI	GGCC	1 cut(s)	845
BtgI	CCRYGG	1 cut(s)	1049
BtsCI	GGATG	5 cut(s)	502, 577, 625, 917, 1042
BtsIMutI	CAGTG	4 cut(s)	6, 52, 355, 989
Cac8I	GCNNGC	2 cut(s)	951, 1114
CfoI	GCGC	1 cut(s)	1127
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	844
CsiI	ACCWGGT	1 cut(s)	700
Csp6I	GTAC	3 cut(s)	11, 376, 1061
CviAII	CATG	8 cut(s)	527, 729, 819, 879, 908, 956, 1050, 1069
CviQI	GTAC	3 cut(s)	11, 376, 1061
DdeI	CTNAG	6 cut(s)	246, 372, 444, 932, 1032, 1146
DpnI	GATC	5 cut(s)	232, 318, 357, 692, 1029
DpnII	GATC	5 cut(s)	230, 316, 355, 690, 1027
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Eco130I	CCWWGG	1 cut(s)	1049
Eco24I	GRGCYC	1 cut(s)	714
Eco32I	GATATC	1 cut(s)	586
Eco81I	CCTNAGG	1 cut(s)	1032
Eco88I	CYCGRG	1 cut(s)	858
EcoRI	GAATTC	1 cut(s)	1103
EcoRII	CCWGG	6 cut(s)	50, 292, 700, 1020, 1107, 1131
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	1049
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	1049
FaeI	CATG	8 cut(s)	530, 732, 822, 882, 911, 959, 1053, 1072
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	8 cut(s)	526, 728, 818, 878, 907, 955, 1049, 1068
Fnu4HI	GCNGC	3 cut(s)	426, 594, 825
FokI	GGATG	5 cut(s)	509, 564, 632, 924, 1049
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	3 cut(s)	426, 594, 825
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	1 cut(s)	1126
GluI	GCNGC	3 cut(s)	426, 594, 825
HaeIII	GGCC	1 cut(s)	845
HapII	CCGG	3 cut(s)	113, 788, 848
HhaI	GCGC	1 cut(s)	1127
Hin1II	CATG	8 cut(s)	530, 732, 822, 882, 911, 959, 1053, 1072
Hin6I	GCGC	1 cut(s)	1125
HinP1I	GCGC	1 cut(s)	1125
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	2 cut(s)	889, 977
HpaII	CCGG	3 cut(s)	113, 788, 848
HphI	GGTGA	4 cut(s)	169, 353, 764, 986
Hpy166II	GTNNAC	2 cut(s)	344, 994
Hpy188I	TCNGA	9 cut(s)	235, 316, 360, 408, 445, 483, 894, 935, 1149
Hpy188III	TCNNGA	7 cut(s)	164, 218, 581, 673, 707, 860, 1031
Hpy8I	GTNNAC	2 cut(s)	344, 994
HpyAV	CCTTC	5 cut(s)	184, 221, 1017, 1049, 1149
HpyCH4III	ACNGT	4 cut(s)	10, 47, 394, 984
HpyCH4IV	ACGT	2 cut(s)	255, 1063
HpyCH4V	TGCA	9 cut(s)	278, 425, 563, 577, 827, 878, 907, 953, 1086
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1122, 1133
HpyF3I	CTNAG	6 cut(s)	246, 372, 444, 932, 1032, 1146
HpySE526I	ACGT	2 cut(s)	255, 1063
Hsp92II	CATG	8 cut(s)	530, 732, 822, 882, 911, 959, 1053, 1072
HspAI	GCGC	1 cut(s)	1125
Kzo9I	GATC	5 cut(s)	230, 316, 355, 690, 1027
LmnI	GCTCC	3 cut(s)	77, 1017, 1051
Lsp1109I	GCAGC	3 cut(s)	437, 605, 811
LweI	GCATC	2 cut(s)	412, 586
MabI	ACCWGGT	1 cut(s)	700
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	2 cut(s)	255, 1063
MaeIII	GTNAC	4 cut(s)	4, 752, 800, 1064
MalI	GATC	5 cut(s)	232, 318, 357, 692, 1029
MboI	GATC	5 cut(s)	230, 316, 355, 690, 1027
MboII	GAAGA	6 cut(s)	201, 233, 550, 635, 791, 948
MflI	RGATCY	3 cut(s)	355, 690, 1027
MhlI	GDGCHC	2 cut(s)	642, 714
MluCI	AATT	6 cut(s)	57, 182, 297, 522, 1002, 1103
MmeI	TCCRAC	2 cut(s)	284, 461
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	4 cut(s)	18, 474, 531, 645
MspI	CCGG	3 cut(s)	113, 788, 848
MspR9I	CCNGG	8 cut(s)	52, 294, 702, 789, 848, 1022, 1109, 1133
MvaI	CCWGG	6 cut(s)	52, 294, 702, 1022, 1109, 1133
MwoI	GCNNNNNNNGC	2 cut(s)	1122, 1133
NciI	CCSGG	2 cut(s)	789, 848
NcoI	CCATGG	1 cut(s)	1049
NdeII	GATC	5 cut(s)	230, 316, 355, 690, 1027
NlaIII	CATG	8 cut(s)	530, 732, 822, 882, 911, 959, 1053, 1072
NlaIV	GGNNCC	2 cut(s)	846, 1019
NmeAIII	GCCGAG	1 cut(s)	1101
NmuCI	GTSAC	4 cut(s)	4, 752, 800, 1064
PfeI	GAWTC	2 cut(s)	889, 977
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	427, 595, 826
Ppu21I	YACGTR	1 cut(s)	1064
PshBI	ATTAAT	1 cut(s)	402
PsiI	TTATAA	1 cut(s)	155
Psp6I	CCWGG	6 cut(s)	50, 292, 700, 1020, 1107, 1131
PspGI	CCWGG	6 cut(s)	50, 292, 700, 1020, 1107, 1131
PspN4I	GGNNCC	2 cut(s)	846, 1019
PspPI	GGNCC	1 cut(s)	844
PsuI	RGATCY	3 cut(s)	355, 690, 1027
RsaI	GTAC	3 cut(s)	12, 377, 1062
RsaNI	GTAC	3 cut(s)	11, 376, 1061
RseI	CAYNNNNRTG	4 cut(s)	18, 474, 531, 645
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	3 cut(s)	426, 594, 825
Sau3AI	GATC	5 cut(s)	230, 316, 355, 690, 1027
Sau96I	GGNCC	1 cut(s)	844
ScaI	AGTACT	1 cut(s)	377
ScrFI	CCNGG	8 cut(s)	52, 294, 702, 789, 848, 1022, 1109, 1133
SduI	GDGCHC	2 cut(s)	642, 714
SexAI	ACCWGGT	1 cut(s)	700
SfaNI	GCATC	2 cut(s)	412, 586
SmiMI	CAYNNNNRTG	4 cut(s)	18, 474, 531, 645
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	6 cut(s)	57, 182, 297, 522, 1002, 1103
SsiI	CCGC	2 cut(s)	353, 871
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	8 cut(s)	50, 292, 700, 787, 846, 1020, 1107, 1131
StyI	CCWWGG	1 cut(s)	1049
TaaI	ACNGT	4 cut(s)	10, 47, 394, 984
TaiI	ACGT	2 cut(s)	258, 1066
TaqI	TCGA	1 cut(s)	645
TasI	AATT	6 cut(s)	57, 182, 297, 522, 1002, 1103
TatI	WGTACW	2 cut(s)	10, 375
TfiI	GAWTC	2 cut(s)	889, 977
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	4 cut(s)	13, 52, 355, 989
TseFI	GTSAC	4 cut(s)	4, 752, 800, 1064
TseI	GCWGC	3 cut(s)	425, 593, 824
Tsp45I	GTSAC	4 cut(s)	4, 752, 800, 1064
TspDTI	ATGAA	7 cut(s)	85, 240, 515, 601, 615, 636, 972
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	4 cut(s)	13, 52, 355, 989
VspI	ATTAAT	1 cut(s)	402
XapI	RAATTY	1 cut(s)	1103
XspI	CTAG	1 cut(s)	486
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.