FvH4_3g31900

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002168
Physical Location & Seq
Forward (+)
26935492 .. 26940824
5333 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31900.t6

Sequence Viewer

Length: 1146 bp
ATGGGCACTGTAAACCGCAGTGGAGTTAAAAAATCAAATGACAGTGCCAGGGCTATTTTCTATACAACTGTGGGAGTTCTATTTGGATTTGCTATTGGTGTATCTTTGCAGAATGCTTTTCTAGGAAAGATTAGGTTTTCACTTCCATCTTTTGATGTACACTTTGCCATGCGTAGAACAACTAACACAAACAAAAGTCTTGAGGATGAAGGATCAGAGGGTGTTCCTAAGATATATGTTCCAACAAATCCTGCTGGTGCTGAAACACTACCTCCAGGAATTGTTGTTCCACAAACAGATTTGTATATGCGCAGATTATGGGGTGAACCAAGTGAGGATCTAAAAATGAAGCCAAAGTACTTGGTAACATTTACCGTTGGTATTAATCAGAAGAAAAATATTGATGCAGCAGTTAAAAAGTTCTCTGAGGATTTCACAATCTTGCTTTTTCACTATGATGGCCGGACTAGTGAATGGGACGAATTTGAGTGGTCGAAGAAAGCAATTCATGTTAGTGCGAAGAGACAAGCAAAGTGGTGGTATGCAAAAAGATTTCTGCATCCTGATGTTGTGTCAGCTTATGAGTATATATTCATTTGGGATGAAGATTTAGGAGTAGAAAACTTCAACGCCGATAAGTATATCGAGCTGGTTAAGAAATACGGTTTGGAAATCTCTCAACCTGGTCTTGAGCCCAATAATGGGCTGACATGGGAGATGACAAAGAGGAGAGGCGACAGAGAAGCCCACAAGGATACAGAAGAAAAACCGGGCTGGTGTAGTGACCCGCATTTACCCCCTTGTGCAGCATTCGTGGAAATAATGGCTCCTGTATTTTCTCGGGAAGCTTGGCGTTGTGTCTGGCATATGATTCAGAATGATTTGGTGCACGGATGGGGATTGGATTTTGCTCTCCGAAGATGTGTAGAGCCTGCGCATGAAAAGATTGGCGTAGTTGATTCTCAGTGGATTGTTCATCAAGTCATTCCTTCCCTTGGGGGCCAGGGACAGGCTGAGGATGGAAAAGCTCCCTGGGAATCGGTACGTGACATGGTGAGAATAAGGTGCAAAAATGAATGGGCTCAGTTCCAATCTCGCCTACTAGATGCAGACAAGGCATACCTTGCTCAGAGAGGAAGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

382

Amino Acids

43.55

Weight (kDa)

7.15

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 82 - 252 2e-82 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 311, 936
AciI CCGC 2 cut(s) 16, 788
AclWI GGATC 2 cut(s) 220, 345
AcoI YGGCCR 1 cut(s) 460
AcsI RAATTY 1 cut(s) 482
AfaI GTAC 3 cut(s) 159, 359, 1044
AfiI CCNNNNNNNGG 4 cut(s) 701, 702, 995, 1009
AgsI TTSAA 1 cut(s) 628
AhlI ACTAGT 1 cut(s) 467
AjnI CCWGG 5 cut(s) 47, 274, 682, 1002, 1031
AjuI GAANNNNNNNTTGG 2 cut(s) 650, 682
AloI GAACNNNNNNTCC 2 cut(s) 270, 302
AluBI AGCT 4 cut(s) 578, 649, 848, 1028
AluI AGCT 4 cut(s) 578, 649, 848, 1028
Alw21I GWGCWC 1 cut(s) 891
Alw26I GTCTC 1 cut(s) 517
Alw44I GTGCAC 1 cut(s) 887
AlwI GGATC 2 cut(s) 220, 345
Ama87I CYCGRG 1 cut(s) 840
AoxI GGCC 2 cut(s) 460, 1000
ApaLI GTGCAC 1 cut(s) 887
ApeKI GCWGC 2 cut(s) 407, 806
ApoI RAATTY 1 cut(s) 482
AseI ATTAAT 1 cut(s) 384
AspLEI GCGC 2 cut(s) 312, 937
AspS9I GGNCC 1 cut(s) 1000
AsuC2I CCSGG 1 cut(s) 771
AsuHPI GGTGA 2 cut(s) 335, 1066
AvaI CYCGRG 1 cut(s) 840
BaeGI GKGCMC 2 cut(s) 8, 891
BanII GRGCYC 2 cut(s) 696, 1084
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
Bbv12I GWGCWC 1 cut(s) 891
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 2 cut(s) 419, 818
BccI CCATC 4 cut(s) 154, 452, 888, 1013
BciT130I CCWGG 5 cut(s) 49, 276, 684, 1004, 1033
BciVI GTATCC 1 cut(s) 748
BcnI CCSGG 1 cut(s) 771
BcoDI GTCTC 1 cut(s) 517
BcuI ACTAGT 1 cut(s) 467
BfaI CTAG 3 cut(s) 122, 468, 1103
BfuI GTATCC 1 cut(s) 748
BisI GCNGC 2 cut(s) 408, 807
BlsI GCNGC 2 cut(s) 409, 808
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 6 cut(s) 49, 276, 684, 771, 1004, 1033
BmeT110I CYCGRG 1 cut(s) 840
BmgT120I GGNCC 1 cut(s) 1000
BmiI GGNNCC 2 cut(s) 828, 1001
BmrFI CCNGG 6 cut(s) 49, 276, 684, 771, 1004, 1033
BmsI GCATC 3 cut(s) 394, 568, 1096
BpmI CTGGAG 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 1014
BpuEI CTTGAG 2 cut(s) 221, 710
BpuMI CCSGG 1 cut(s) 771
BsaAI YACGTR 1 cut(s) 1046
BsaJI CCNNGG 5 cut(s) 48, 994, 1003, 1031, 1032
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 4 cut(s) 701, 702, 995, 1009
BseBI CCWGG 5 cut(s) 49, 276, 684, 1004, 1033
BseDI CCNNGG 5 cut(s) 48, 994, 1003, 1031, 1032
BseGI GGATG 5 cut(s) 211, 559, 607, 899, 1024
BseLI CCNNNNNNNGG 4 cut(s) 701, 702, 995, 1009
BseMII CTCAG 5 cut(s) 417, 977, 1005, 1097, 1142
BseRI GAGGAG 1 cut(s) 742
BseSI GKGCMC 2 cut(s) 8, 891
BseXI GCAGC 2 cut(s) 419, 818
BsgI GTGCAG 1 cut(s) 825
BshFI GGCC 2 cut(s) 462, 1002
BsiHKAI GWGCWC 1 cut(s) 891
BsiHKCI CYCGRG 1 cut(s) 840
BsiSI CCGG 2 cut(s) 463, 770
BslFI GGGAC 2 cut(s) 491, 1020
BslI CCNNNNNNNGG 4 cut(s) 701, 702, 995, 1009
BsmAI GTCTC 1 cut(s) 517
BsmFI GGGAC 2 cut(s) 491, 1020
BsmI GAATGC 2 cut(s) 118, 809
BsnI GGCC 2 cut(s) 462, 1002
BsoBI CYCGRG 1 cut(s) 840
Bsp1286I GDGCHC 4 cut(s) 8, 696, 891, 1084
Bsp1407I TGTACA 1 cut(s) 157
Bsp143I GATC 2 cut(s) 212, 337
BspACI CCGC 2 cut(s) 16, 788
BspANI GGCC 2 cut(s) 462, 1002
BspCNI CTCAG 5 cut(s) 418, 976, 1006, 1096, 1141
BspLI GGNNCC 2 cut(s) 828, 1001
BspPI GGATC 2 cut(s) 220, 345
BsrGI TGTACA 1 cut(s) 157
BssECI CCNNGG 5 cut(s) 48, 994, 1003, 1031, 1032
BssMI GATC 2 cut(s) 212, 337
BssT1I CCWWGG 1 cut(s) 994
Bst2UI CCWGG 5 cut(s) 49, 276, 684, 1004, 1033
Bst4CI ACNGT 5 cut(s) 10, 44, 70, 376, 665
Bst6I CTCTTC 2 cut(s) 515, 1132
BstAPI GCANNNNNTGC 1 cut(s) 1124
BstAUI TGTACA 1 cut(s) 157
BstBAI YACGTR 1 cut(s) 1046
BstC8I GCNNGC 1 cut(s) 933
BstDEI CTNAG 6 cut(s) 228, 426, 963, 1014, 1083, 1128
BstF5I GGATG 5 cut(s) 211, 559, 607, 899, 1024
BstHHI GCGC 2 cut(s) 312, 937
BstKTI GATC 2 cut(s) 215, 340
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 2 cut(s) 212, 337
BstMWI GCNNNNNNNGC 2 cut(s) 1115, 1124
BstNI CCWGG 5 cut(s) 49, 276, 684, 1004, 1033
BstSCI CCNGG 6 cut(s) 47, 274, 682, 769, 1002, 1031
BstSLI GKGCMC 2 cut(s) 8, 891
BstV1I GCAGC 2 cut(s) 419, 818
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuI GTATCC 1 cut(s) 748
BsuRI GGCC 2 cut(s) 462, 1002
BtsCI GGATG 5 cut(s) 211, 559, 607, 899, 1024
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 4 cut(s) 6, 25, 49, 971
Cac8I GCNNGC 1 cut(s) 933
CfoI GCGC 2 cut(s) 312, 937
Cfr13I GGNCC 1 cut(s) 1000
CsiI ACCWGGT 1 cut(s) 682
Csp6I GTAC 3 cut(s) 158, 358, 1043
CspCI CAANNNNNGTGG 2 cut(s) 515, 550
CviAII CATG 5 cut(s) 169, 509, 711, 938, 1051
CviQI GTAC 3 cut(s) 158, 358, 1043
DdeI CTNAG 6 cut(s) 228, 426, 963, 1014, 1083, 1128
DpnI GATC 2 cut(s) 214, 339
DpnII GATC 2 cut(s) 212, 337
EaeI YGGCCR 1 cut(s) 460
Eam1104I CTCTTC 2 cut(s) 515, 1132
EarI CTCTTC 2 cut(s) 515, 1132
Eco130I CCWWGG 1 cut(s) 994
Eco24I GRGCYC 2 cut(s) 696, 1084
Eco88I CYCGRG 1 cut(s) 840
EcoRII CCWGG 5 cut(s) 47, 274, 682, 1002, 1031
EcoT14I CCWWGG 1 cut(s) 994
EcoT38I GRGCYC 2 cut(s) 696, 1084
ErhI CCWWGG 1 cut(s) 994
FaeI CATG 5 cut(s) 172, 512, 714, 941, 1054
FaqI GGGAC 2 cut(s) 491, 1020
FatI CATG 5 cut(s) 168, 508, 710, 937, 1050
FauI CCCGC 1 cut(s) 795
FauNDI CATATG 1 cut(s) 867
Fnu4HI GCNGC 2 cut(s) 408, 807
FokI GGATG 5 cut(s) 218, 546, 614, 906, 1031
FriOI GRGCYC 2 cut(s) 696, 1084
Fsp4HI GCNGC 2 cut(s) 408, 807
FspBI CTAG 3 cut(s) 122, 468, 1103
FspI TGCGCA 2 cut(s) 311, 936
GlaI GCGC 2 cut(s) 311, 936
GluI GCNGC 2 cut(s) 408, 807
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 2 cut(s) 462, 1002
HapII CCGG 2 cut(s) 463, 770
HhaI GCGC 2 cut(s) 312, 937
Hin1II CATG 5 cut(s) 172, 512, 714, 941, 1054
Hin6I GCGC 2 cut(s) 310, 935
HinP1I GCGC 2 cut(s) 310, 935
HindIII AAGCTT 1 cut(s) 846
HinfI GANTC 3 cut(s) 871, 959, 1037
HpaII CCGG 2 cut(s) 463, 770
HphI GGTGA 2 cut(s) 335, 1066
Hpy166II GTNNAC 4 cut(s) 13, 160, 326, 889
Hpy188I TCNGA 6 cut(s) 217, 390, 427, 876, 917, 1131
Hpy188III TCNNGA 4 cut(s) 200, 563, 689, 842
Hpy8I GTNNAC 4 cut(s) 13, 160, 326, 889
HpyAV CCTTC 2 cut(s) 203, 999
HpyCH4III ACNGT 5 cut(s) 10, 44, 70, 376, 665
HpyCH4IV ACGT 1 cut(s) 1045
HpyCH4V TGCA 8 cut(s) 109, 407, 545, 559, 806, 889, 1068, 1109
HpyF10VI GCNNNNNNNGC 2 cut(s) 1115, 1124
HpyF3I CTNAG 6 cut(s) 228, 426, 963, 1014, 1083, 1128
HpySE526I ACGT 1 cut(s) 1045
Hsp92II CATG 5 cut(s) 172, 512, 714, 941, 1054
HspAI GCGC 2 cut(s) 310, 935
Kzo9I GATC 2 cut(s) 212, 337
LmnI GCTCC 2 cut(s) 832, 1033
Lsp1109I GCAGC 2 cut(s) 419, 818
LweI GCATC 3 cut(s) 394, 568, 1096
MabI ACCWGGT 1 cut(s) 682
MaeI CTAG 3 cut(s) 122, 468, 1103
MaeII ACGT 1 cut(s) 1045
MaeIII GTNAC 3 cut(s) 364, 782, 1046
MalI GATC 2 cut(s) 214, 339
MboI GATC 2 cut(s) 212, 337
MboII GAAGA 6 cut(s) 403, 508, 532, 617, 773, 930
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 4 cut(s) 8, 696, 891, 1084
MluCI AATT 3 cut(s) 279, 482, 504
MmeI TCCRAC 1 cut(s) 266
MseI TTAA 4 cut(s) 27, 384, 414, 654
MslI CAYNNNNRTG 3 cut(s) 456, 513, 564
MspI CCGG 2 cut(s) 463, 770
MspR9I CCNGG 6 cut(s) 49, 276, 684, 771, 1004, 1033
Mva1269I GAATGC 2 cut(s) 118, 809
MvaI CCWGG 5 cut(s) 49, 276, 684, 1004, 1033
MwoI GCNNNNNNNGC 2 cut(s) 1115, 1124
NciI CCSGG 1 cut(s) 771
NdeI CATATG 1 cut(s) 867
NdeII GATC 2 cut(s) 212, 337
NlaIII CATG 5 cut(s) 172, 512, 714, 941, 1054
NlaIV GGNNCC 2 cut(s) 828, 1001
NmuCI GTSAC 2 cut(s) 782, 1046
NsbI TGCGCA 2 cut(s) 311, 936
PasI CCCWGGG 1 cut(s) 1032
PctI GAATGC 2 cut(s) 118, 809
PfeI GAWTC 3 cut(s) 871, 959, 1037
PfoI TCCNGGA 1 cut(s) 274
PkrI GCNGC 2 cut(s) 409, 808
Ppu21I YACGTR 1 cut(s) 1046
PshBI ATTAAT 1 cut(s) 384
Psp6I CCWGG 5 cut(s) 47, 274, 682, 1002, 1031
PspGI CCWGG 5 cut(s) 47, 274, 682, 1002, 1031
PspN4I GGNNCC 2 cut(s) 828, 1001
PspPI GGNCC 1 cut(s) 1000
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 3 cut(s) 159, 359, 1044
RsaNI GTAC 3 cut(s) 158, 358, 1043
RseI CAYNNNNRTG 3 cut(s) 456, 513, 564
SaqAI TTAA 4 cut(s) 27, 384, 414, 654
SatI GCNGC 2 cut(s) 408, 807
Sau3AI GATC 2 cut(s) 212, 337
Sau96I GGNCC 1 cut(s) 1000
ScaI AGTACT 1 cut(s) 359
ScrFI CCNGG 6 cut(s) 49, 276, 684, 771, 1004, 1033
SduI GDGCHC 4 cut(s) 8, 696, 891, 1084
SexAI ACCWGGT 1 cut(s) 682
SfaNI GCATC 3 cut(s) 394, 568, 1096
SmiMI CAYNNNNRTG 3 cut(s) 456, 513, 564
SmlI CTYRAG 2 cut(s) 200, 689
SmoI CTYRAG 2 cut(s) 200, 689
SpeI ACTAGT 1 cut(s) 467
Sse9I AATT 3 cut(s) 279, 482, 504
SsiI CCGC 2 cut(s) 16, 788
SspI AATATT 1 cut(s) 400
SspMI CTAG 3 cut(s) 122, 468, 1103
StyD4I CCNGG 6 cut(s) 47, 274, 682, 769, 1002, 1031
StyI CCWWGG 1 cut(s) 994
TaaI ACNGT 5 cut(s) 10, 44, 70, 376, 665
TaiI ACGT 1 cut(s) 1048
TaqI TCGA 2 cut(s) 494, 645
TasI AATT 3 cut(s) 279, 482, 504
TatI WGTACW 2 cut(s) 157, 357
TfiI GAWTC 3 cut(s) 871, 959, 1037
Tru1I TTAA 4 cut(s) 27, 384, 414, 654
Tru9I TTAA 4 cut(s) 27, 384, 414, 654
TscAI CASTG 4 cut(s) 13, 25, 49, 971
TseFI GTSAC 2 cut(s) 782, 1046
TseI GCWGC 2 cut(s) 407, 806
Tsp45I GTSAC 2 cut(s) 782, 1046
TspDTI ATGAA 8 cut(s) 222, 362, 497, 583, 618, 954, 965, 1089
TspGWI ACGGA 1 cut(s) 906
TspRI CASTG 4 cut(s) 13, 25, 49, 971
VneI GTGCAC 1 cut(s) 887
VspI ATTAAT 1 cut(s) 384
XapI RAATTY 1 cut(s) 482
XspI CTAG 3 cut(s) 122, 468, 1103
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.