MD03G1120300.v1.1

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0002168
Physical Location & Seq
Reverse (-)
11037601 .. 11043503
5903 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1120300.v1.1.491

Sequence Viewer

Length: 1155 bp
ATGGGCACTGTACATCGCAGTGGGGTTAAAAAATCAAATGACAGTGCCAGGCTTATTTTCACTACAATTTTGGGAGTTGTCTTTGGATTTTTTATTGGTGTATCATTACCGATGGTTTCTCTAAGCAAGATTAGGTTACCTTCAAGCCTTATAACATCTCTTGATGTAGCCTTCACCCAACTACGTAGACCTAGTAATCCTCCCCCTTCAAACAAGAGTCTTGAAGATGAAGGATCAGAGGGTGTCCCTAAGATATATGTTCCAACAAACCCGCGTGGTGCGGAAACACTACCCCCAGGAATTATTGTTCCTCAATCTGATCTTTATATCCGGAGATTGTGGGGTGAACCCAGTGAGGATCTGAAAGTAACGCCAAAGTATTTGGTATCATTTACTGTTGGTATAAATCAGAAAATGAATATTGATGCAGCCATTAAAAAGTTCTCCGAGAACTTCACAATATTGCTTTTTCACTATGATGGCCGGACTAGTGAGTGGGAGGAGTTTGAGTGGTCAAAGAGGGCAATTCATGTTAGTGTGAAGAGACAAGCAAAATGGTGGTATGCAAAGAGATTTTTGCATCCTGATGTCGTGGCAGCTTATGAATATATTTTCATTTGGGATGAAGATTTGGGAGTAGAACATTTCAATGCAGAGAAGTATATACAGTTGGTCAAGAAATATGGTTTGGAGATCTCTCAACCGGGTCTTGAGCCCAATGATGGACTGACATGGGAGATGACAAAGAGGAGAGGTGACAGAGAAGTTCACAAGGATACAGAAGAAAAACCAGGCTGGTGTAGTGACCCACATCTTCCTCCTTGTGCTGCATTTGTGGAAATAATGGCCCCTGTCTTTTCGCGGGAAGCTTGGCGTTGCGCATGGCATATGATCCAAAATGATTTAGTGCATGGATGGGGATTGGATTTTGCTCTCAGAAGATGTGTAGAGCCTGCTCATGAAAAGATTGGTGTAGTTGATTCACAGTGGATTGTTCATCAAGTAATTCCTTCTCTTGGGGGCCAGGGAAATCAGGAGGATGGAAAAGCTCCATGGGAAGGGGTGAGAACAAGGTGCAAAAATGAGTGGGCTGAATTCCAGGCTCGCCTCCTCGGCGCAGACCAGGCATACCTTTCTAAGAAAGGAAAGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

385

Amino Acids

43.67

Weight (kDa)

7.18

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 89 - 374 2.5e-138 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
Acc16I TGCGCA 1 cut(s) 880
AccI GTMKAC 1 cut(s) 187
AccII CGCG 2 cut(s) 274, 862
AccIII TCCGGA 1 cut(s) 330
AciI CCGC 3 cut(s) 272, 281, 862
AclWI GGATC 3 cut(s) 241, 366, 886
AcoI YGGCCR 1 cut(s) 481
AcsI RAATTY 1 cut(s) 1094
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 3 cut(s) 722, 1016, 1058
AgsI TTSAA 4 cut(s) 144, 210, 224, 649
AhlI ACTAGT 1 cut(s) 488
AjnI CCWGG 6 cut(s) 47, 295, 790, 1023, 1098, 1122
AjuI GAANNNNNNNTTGG 2 cut(s) 671, 703
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
AluBI AGCT 3 cut(s) 599, 869, 1049
AluI AGCT 3 cut(s) 599, 869, 1049
Alw26I GTCTC 1 cut(s) 538
AlwI GGATC 3 cut(s) 241, 366, 886
Aor13HI TCCGGA 1 cut(s) 330
AoxI GGCC 3 cut(s) 481, 846, 1021
ApeKI GCWGC 3 cut(s) 428, 596, 827
ApoI RAATTY 1 cut(s) 1094
AspLEI GCGC 2 cut(s) 881, 1118
AspS9I GGNCC 2 cut(s) 847, 1021
AsuC2I CCSGG 1 cut(s) 705
AsuHPI GGTGA 4 cut(s) 166, 356, 767, 1075
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 717
BbvI GCAGC 3 cut(s) 440, 608, 814
BccI CCATC 5 cut(s) 106, 473, 716, 909, 1034
BciT130I CCWGG 6 cut(s) 49, 297, 792, 1025, 1100, 1124
BciVI GTATCC 1 cut(s) 769
BcnI CCSGG 1 cut(s) 705
BcoDI GTCTC 1 cut(s) 538
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 2 cut(s) 192, 489
BfuI GTATCC 1 cut(s) 769
BglI GCCNNNNNGGC 1 cut(s) 1113
BglII AGATCT 1 cut(s) 693
BisI GCNGC 3 cut(s) 429, 597, 828
BlsI GCNGC 3 cut(s) 430, 598, 829
Bme1390I CCNGG 7 cut(s) 49, 297, 705, 792, 1025, 1100, 1124
BmgT120I GGNCC 2 cut(s) 847, 1021
BmiI GGNNCC 2 cut(s) 849, 1022
BmrFI CCNGG 7 cut(s) 49, 297, 705, 792, 1025, 1100, 1124
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 2 cut(s) 415, 589
BmuI ACTGGG 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 731
BpuMI CCSGG 1 cut(s) 705
BsaAI YACGTR 1 cut(s) 185
BsaJI CCNNGG 4 cut(s) 295, 1024, 1052, 1111
BsaWI WCCGGW 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bsc4I CCNNNNNNNGG 3 cut(s) 722, 1016, 1058
Bse1I ACTGG 1 cut(s) 351
BseAI TCCGGA 1 cut(s) 330
BseBI CCWGG 6 cut(s) 49, 297, 792, 1025, 1100, 1124
BseDI CCNNGG 4 cut(s) 295, 1024, 1052, 1111
BseGI GGATG 4 cut(s) 580, 628, 920, 1045
BseLI CCNNNNNNNGG 3 cut(s) 722, 1016, 1058
BseMII CTCAG 1 cut(s) 949
BseNI ACTGG 1 cut(s) 351
BseRI GAGGAG 3 cut(s) 515, 763, 1100
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 3 cut(s) 440, 608, 814
Bsh1236I CGCG 2 cut(s) 274, 862
BshFI GGCC 3 cut(s) 483, 848, 1023
BsiSI CCGG 3 cut(s) 331, 484, 704
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 3 cut(s) 722, 1016, 1058
BsmAI GTCTC 1 cut(s) 538
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 3 cut(s) 483, 848, 1023
Bsp1286I GDGCHC 2 cut(s) 8, 717
Bsp13I TCCGGA 1 cut(s) 330
Bsp1407I TGTACA 1 cut(s) 10
Bsp143I GATC 5 cut(s) 233, 319, 358, 693, 891
Bsp19I CCATGG 1 cut(s) 1052
BspACI CCGC 3 cut(s) 272, 281, 862
BspANI GGCC 3 cut(s) 483, 848, 1023
BspCNI CTCAG 1 cut(s) 948
BspEI TCCGGA 1 cut(s) 330
BspFNI CGCG 2 cut(s) 274, 862
BspHI TCATGA 1 cut(s) 958
BspLI GGNNCC 2 cut(s) 849, 1022
BspPI GGATC 3 cut(s) 241, 366, 886
BsrGI TGTACA 1 cut(s) 10
BsrI ACTGG 1 cut(s) 351
BssECI CCNNGG 4 cut(s) 295, 1024, 1052, 1111
BssMI GATC 5 cut(s) 233, 319, 358, 693, 891
BssT1I CCWWGG 1 cut(s) 1052
Bst2UI CCWGG 6 cut(s) 49, 297, 792, 1025, 1100, 1124
Bst4CI ACNGT 5 cut(s) 10, 44, 397, 669, 987
Bst6I CTCTTC 1 cut(s) 536
BstAUI TGTACA 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 954, 1105
BstDEI CTNAG 4 cut(s) 122, 249, 935, 1137
BstDSI CCRYGG 1 cut(s) 1052
BstEII GGTNACC 1 cut(s) 135
BstF5I GGATG 4 cut(s) 580, 628, 920, 1045
BstFNI CGCG 2 cut(s) 274, 862
BstHHI GCGC 2 cut(s) 881, 1118
BstKTI GATC 5 cut(s) 236, 322, 361, 696, 894
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 5 cut(s) 233, 319, 358, 693, 891
BstMWI GCNNNNNNNGC 2 cut(s) 1113, 1124
BstNI CCWGG 6 cut(s) 49, 297, 792, 1025, 1100, 1124
BstPI GGTNACC 1 cut(s) 135
BstSCI CCNGG 7 cut(s) 47, 295, 703, 790, 1023, 1098, 1122
BstSLI GKGCMC 1 cut(s) 8
BstSNI TACGTA 1 cut(s) 185
BstUI CGCG 2 cut(s) 274, 862
BstV1I GCAGC 3 cut(s) 440, 608, 814
BstX2I RGATCY 2 cut(s) 358, 693
BstYI RGATCY 2 cut(s) 358, 693
BsuI GTATCC 1 cut(s) 769
BsuRI GGCC 3 cut(s) 483, 848, 1023
BtgI CCRYGG 1 cut(s) 1052
BtsCI GGATG 4 cut(s) 580, 628, 920, 1045
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 5 cut(s) 6, 25, 49, 358, 992
Cac8I GCNNGC 2 cut(s) 954, 1105
CciI TCATGA 1 cut(s) 958
CfoI GCGC 2 cut(s) 881, 1118
Cfr13I GGNCC 2 cut(s) 847, 1021
Csp6I GTAC 1 cut(s) 11
CviAII CATG 6 cut(s) 530, 732, 882, 911, 959, 1053
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 4 cut(s) 122, 249, 935, 1137
DpnI GATC 5 cut(s) 235, 321, 360, 695, 893
DpnII GATC 5 cut(s) 233, 319, 358, 693, 891
EaeI YGGCCR 1 cut(s) 481
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco105I TACGTA 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 1052
Eco24I GRGCYC 1 cut(s) 717
Eco91I GGTNACC 1 cut(s) 135
EcoO65I GGTNACC 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 1094
EcoRII CCWGG 6 cut(s) 47, 295, 790, 1023, 1098, 1122
EcoT14I CCWWGG 1 cut(s) 1052
EcoT38I GRGCYC 1 cut(s) 717
ErhI CCWWGG 1 cut(s) 1052
FaeI CATG 6 cut(s) 533, 735, 885, 914, 962, 1056
FaqI GGGAC 1 cut(s) 230
FatI CATG 6 cut(s) 529, 731, 881, 910, 958, 1052
FauI CCCGC 2 cut(s) 279, 855
FauNDI CATATG 1 cut(s) 888
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 429, 597, 828
FokI GGATG 4 cut(s) 567, 635, 927, 1052
FriOI GRGCYC 1 cut(s) 717
Fsp4HI GCNGC 3 cut(s) 429, 597, 828
FspBI CTAG 2 cut(s) 192, 489
FspI TGCGCA 1 cut(s) 880
GlaI GCGC 2 cut(s) 880, 1117
GluI GCNGC 3 cut(s) 429, 597, 828
HaeIII GGCC 3 cut(s) 483, 848, 1023
HapII CCGG 3 cut(s) 331, 484, 704
HhaI GCGC 2 cut(s) 881, 1118
Hin1II CATG 6 cut(s) 533, 735, 885, 914, 962, 1056
Hin6I GCGC 2 cut(s) 879, 1116
HinP1I GCGC 2 cut(s) 879, 1116
HindIII AAGCTT 1 cut(s) 867
HinfI GANTC 2 cut(s) 217, 980
HpaII CCGG 3 cut(s) 331, 484, 704
HphI GGTGA 4 cut(s) 166, 356, 767, 1075
Hpy166II GTNNAC 3 cut(s) 188, 347, 769
Hpy188I TCNGA 6 cut(s) 238, 319, 363, 411, 448, 938
Hpy188III TCNNGA 8 cut(s) 161, 221, 331, 584, 676, 710, 959, 1034
Hpy8I GTNNAC 3 cut(s) 188, 347, 769
HpyAV CCTTC 6 cut(s) 150, 181, 216, 224, 1020, 1052
HpyCH4III ACNGT 5 cut(s) 10, 44, 397, 669, 987
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 7 cut(s) 428, 566, 580, 653, 830, 910, 1077
HpyF10VI GCNNNNNNNGC 2 cut(s) 1113, 1124
HpyF3I CTNAG 4 cut(s) 122, 249, 935, 1137
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 6 cut(s) 533, 735, 885, 914, 962, 1056
HspAI GCGC 2 cut(s) 879, 1116
Kpn2I TCCGGA 1 cut(s) 330
Kzo9I GATC 5 cut(s) 233, 319, 358, 693, 891
LmnI GCTCC 1 cut(s) 1054
Lsp1109I GCAGC 3 cut(s) 440, 608, 814
LweI GCATC 2 cut(s) 415, 589
MaeI CTAG 2 cut(s) 192, 489
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 4 cut(s) 135, 367, 755, 803
MalI GATC 5 cut(s) 235, 321, 360, 695, 893
MboI GATC 5 cut(s) 233, 319, 358, 693, 891
MboII GAAGA 6 cut(s) 236, 553, 638, 794, 806, 951
MflI RGATCY 2 cut(s) 358, 693
MhlI GDGCHC 2 cut(s) 8, 717
MluCI AATT 5 cut(s) 66, 300, 525, 1005, 1094
MlyI GAGTC 1 cut(s) 226
MmeI TCCRAC 1 cut(s) 287
MroI TCCGGA 1 cut(s) 330
MseI TTAA 2 cut(s) 27, 435
MslI CAYNNNNRTG 5 cut(s) 18, 477, 534, 585, 648
MspI CCGG 3 cut(s) 331, 484, 704
MspR9I CCNGG 7 cut(s) 49, 297, 705, 792, 1025, 1100, 1124
MvaI CCWGG 6 cut(s) 49, 297, 792, 1025, 1100, 1124
MvnI CGCG 2 cut(s) 274, 862
MwoI GCNNNNNNNGC 2 cut(s) 1113, 1124
NciI CCSGG 1 cut(s) 705
NcoI CCATGG 1 cut(s) 1052
NdeI CATATG 1 cut(s) 888
NdeII GATC 5 cut(s) 233, 319, 358, 693, 891
NlaIII CATG 6 cut(s) 533, 735, 885, 914, 962, 1056
NlaIV GGNNCC 2 cut(s) 849, 1022
NmeAIII GCCGAG 1 cut(s) 1092
NmuCI GTSAC 2 cut(s) 755, 803
NsbI TGCGCA 1 cut(s) 880
PagI TCATGA 1 cut(s) 958
PfeI GAWTC 1 cut(s) 980
PkrI GCNGC 3 cut(s) 430, 598, 829
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
Ppu21I YACGTR 1 cut(s) 185
PsiI TTATAA 1 cut(s) 152
Psp6I CCWGG 6 cut(s) 47, 295, 790, 1023, 1098, 1122
PspEI GGTNACC 1 cut(s) 135
PspGI CCWGG 6 cut(s) 47, 295, 790, 1023, 1098, 1122
PspN4I GGNNCC 2 cut(s) 849, 1022
PspPI GGNCC 2 cut(s) 847, 1021
PsuI RGATCY 2 cut(s) 358, 693
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 5 cut(s) 18, 477, 534, 585, 648
SaqAI TTAA 2 cut(s) 27, 435
SatI GCNGC 3 cut(s) 429, 597, 828
Sau3AI GATC 5 cut(s) 233, 319, 358, 693, 891
Sau96I GGNCC 2 cut(s) 847, 1021
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 7 cut(s) 49, 297, 705, 792, 1025, 1100, 1124
SduI GDGCHC 2 cut(s) 8, 717
SfaNI GCATC 2 cut(s) 415, 589
SmiMI CAYNNNNRTG 5 cut(s) 18, 477, 534, 585, 648
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SnaBI TACGTA 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 488
Sse9I AATT 5 cut(s) 66, 300, 525, 1005, 1094
SsiI CCGC 3 cut(s) 272, 281, 862
SspI AATATT 2 cut(s) 421, 462
SspMI CTAG 2 cut(s) 192, 489
StyD4I CCNGG 7 cut(s) 47, 295, 703, 790, 1023, 1098, 1122
StyI CCWWGG 1 cut(s) 1052
TaaI ACNGT 5 cut(s) 10, 44, 397, 669, 987
TaiI ACGT 1 cut(s) 187
TasI AATT 5 cut(s) 66, 300, 525, 1005, 1094
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 1 cut(s) 980
Tru1I TTAA 2 cut(s) 27, 435
Tru9I TTAA 2 cut(s) 27, 435
TscAI CASTG 5 cut(s) 13, 25, 49, 358, 992
TseFI GTSAC 2 cut(s) 755, 803
TseI GCWGC 3 cut(s) 428, 596, 827
Tsp45I GTSAC 2 cut(s) 755, 803
TspDTI ATGAA 8 cut(s) 243, 431, 518, 604, 618, 639, 975, 986
TspRI CASTG 5 cut(s) 13, 25, 49, 358, 992
XapI RAATTY 1 cut(s) 1094
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 2 cut(s) 192, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.