AT2G28310

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002168
Physical Location & Seq
Forward (+)
12085356 .. 12088121
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28310.3

Sequence Viewer

Length: 1125 bp
ATGGGAACAATGCACCGCAGTGGTGCTCCTCGAAGAACGAATGAAAATGCAAAGGTTATTATTACTACTATTTTGGGGATAGTGTTTGGGACTTTTATTGGTATCACATTACCTTCACTTTCGTTTAAGATTAACTTACCCTCGCGCCTTATATCATCTCTTGATGTAGCCATATCTGGTGACAAATCCCCTGAAGATTTCGGTTCAAGAAAGTTTCCTGAGATATATGTTCCAACTAACCCGCGTGGTGCAGAACTACTACCTCCAGGAATCGTTGTGGCGAAAACTGATTTTTACTTGCGTAGATTATGGGGAGAACCTAATGAAGATTTGAAGAAGAAGCCAAAATATCTTGTGACATTTACAGTTGGATTTGAGCAGAGGAACCATATTAATGGAGTTGTTAAGAAGTTTTCTGAAGATTTCCAAATTTTGCTCTTCCATTATGATGGCCGGACAACTGAATGGGACCAATTTGAGTGGTCGAAGAGCGCGATTCATATTAGTACAAGAAAGCAAACAAAATGGTGGTACGCGAAGAGGTTTTTGCATCCTGATGTTGTGTCAGCTTATGAGTACATATTTATATGGGATGAAGATCTTGGAGTGGAGCATTTCAATGCGGATAAGTACATTGAGTTAGTTAAGAAGCATGGTTTAGAGATTTCTCAACCAGGCTTAGAGCCTAACAATGGACTCACATGGGAAATGACAAAGAGGAGAGGTGACCGGGAAGTCCATAAAGATACAAAAGAGAAACCAGGATGGTGTAAAGACCCACATTTACCTCCATGTGCCGCGTTTGTTGAAATAATGGCGCCTGTATTTTCTCGAGAAGCATGGCGATGTGTGTGGCATATGATTCAGAATGATCTGGTTCATGGATGGGGTCTCGACTTTGCGCTTAGAAGATGCGTTGAACCTGCTCATGAGAAGATTGGTGTTGTGGATTCGCAATGGATAATACATAAAGTGATACCTTCACTTGGAAGTCAAGGAAAGTCAGAGAATGGGAAAGCTCCATGGCAAGGAGTGAGAGATAGATGCAAAATGGAATGGACAATGTTTCAGAACCGATTGGCTGATGCTGATAAAGAGTATCTTGGGAAGATGGTGAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

374

Amino Acids

43.18

Weight (kDa)

8.76

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 79 - 366 8.7e-141 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 734
Acc36I ACCTGC 1 cut(s) 931
AccB1I GGYRCC 1 cut(s) 817
AccII CGCG 5 cut(s) 145, 244, 494, 536, 800
AciI CCGC 4 cut(s) 16, 242, 623, 798
AcoI YGGCCR 1 cut(s) 451
AcsI RAATTY 1 cut(s) 429
AcuI CTGAAG 2 cut(s) 213, 438
AcyI GRCGYC 1 cut(s) 818
AfaI GTAC 4 cut(s) 508, 533, 578, 632
AfiI CCNNNNNNNGG 3 cut(s) 692, 986, 1028
AgsI TTSAA 5 cut(s) 207, 334, 619, 809, 920
AjnI CCWGG 3 cut(s) 265, 673, 760
AleI CACNNNNGTG 1 cut(s) 18
AluBI AGCT 2 cut(s) 569, 1019
AluI AGCT 2 cut(s) 569, 1019
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 896
Ama87I CYCGRG 1 cut(s) 831
AoxI GGCC 1 cut(s) 451
ApoI RAATTY 1 cut(s) 429
AseI ATTAAT 1 cut(s) 393
AspLEI GCGC 4 cut(s) 147, 494, 820, 904
AspS9I GGNCC 1 cut(s) 469
AsuC2I CCSGG 1 cut(s) 731
AsuHPI GGTGA 2 cut(s) 191, 737
AvaI CYCGRG 1 cut(s) 831
AvaII GGWCC 1 cut(s) 469
BanI GGYRCC 1 cut(s) 817
Bbv12I GWGCWC 1 cut(s) 28
BccI CCATC 4 cut(s) 443, 759, 879, 1105
BciT130I CCWGG 3 cut(s) 267, 675, 762
BcnI CCSGG 1 cut(s) 731
BcoDI GTCTC 1 cut(s) 896
BfoI RGCGCY 1 cut(s) 821
BfuAI ACCTGC 1 cut(s) 931
BglII AGATCT 1 cut(s) 598
BisI GCNGC 1 cut(s) 798
BlsI GCNGC 1 cut(s) 799
Bme1390I CCNGG 4 cut(s) 267, 675, 731, 762
Bme18I GGWCC 1 cut(s) 469
BmeT110I CYCGRG 1 cut(s) 831
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 3 cut(s) 386, 470, 819
BmrFI CCNGG 4 cut(s) 267, 675, 731, 762
BmsI GCATC 4 cut(s) 559, 902, 1034, 1075
BpmI CTGGAG 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 731
BsaBI GATNNNNATC 1 cut(s) 597
BsaHI GRCGYC 1 cut(s) 818
BsaI GGTCTC 1 cut(s) 896
BsaJI CCNNGG 1 cut(s) 1022
Bsc4I CCNNNNNNNGG 3 cut(s) 692, 986, 1028
Bse3DI GCAATG 1 cut(s) 962
Bse8I GATNNNNATC 1 cut(s) 597
BseBI CCWGG 3 cut(s) 267, 675, 762
BseDI CCNNGG 1 cut(s) 1022
BseGI GGATG 4 cut(s) 550, 598, 770, 890
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 3 cut(s) 692, 986, 1028
BseMI GCAATG 1 cut(s) 962
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 18, 733
BsgI GTGCAG 1 cut(s) 270
Bsh1236I CGCG 5 cut(s) 145, 244, 494, 536, 800
BshFI GGCC 1 cut(s) 453
BshNI GGYRCC 1 cut(s) 817
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 831
BsiSI CCGG 2 cut(s) 454, 730
BslFI GGGAC 2 cut(s) 103, 482
BslI CCNNNNNNNGG 3 cut(s) 692, 986, 1028
BsmAI GTCTC 1 cut(s) 896
BsmFI GGGAC 2 cut(s) 103, 482
BsnI GGCC 1 cut(s) 453
Bso31I GGTCTC 1 cut(s) 896
BsoBI CYCGRG 1 cut(s) 831
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 598, 871
Bsp19I CCATGG 1 cut(s) 1022
BspACI CCGC 4 cut(s) 16, 242, 623, 798
BspANI GGCC 1 cut(s) 453
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 5 cut(s) 145, 244, 494, 536, 800
BspHI TCATGA 1 cut(s) 928
BspLI GGNNCC 3 cut(s) 386, 470, 819
BspMI ACCTGC 1 cut(s) 931
BspQI GCTCTTC 2 cut(s) 443, 482
BspT107I GGYRCC 1 cut(s) 817
BspTNI GGTCTC 1 cut(s) 896
BsrDI GCAATG 1 cut(s) 962
BssECI CCNNGG 1 cut(s) 1022
BssMI GATC 2 cut(s) 598, 871
BssNI GRCGYC 1 cut(s) 818
BssT1I CCWWGG 1 cut(s) 1022
Bst2UI CCWGG 3 cut(s) 267, 675, 762
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 3 cut(s) 443, 482, 533
BstACI GRCGYC 1 cut(s) 818
BstDEI CTNAG 3 cut(s) 219, 679, 905
BstDSI CCRYGG 1 cut(s) 1022
BstEII GGTNACC 1 cut(s) 725
BstF5I GGATG 4 cut(s) 550, 598, 770, 890
BstFNI CGCG 5 cut(s) 145, 244, 494, 536, 800
BstH2I RGCGCY 1 cut(s) 821
BstHHI GCGC 4 cut(s) 147, 494, 820, 904
BstKTI GATC 2 cut(s) 601, 874
BstMAI GTCTC 1 cut(s) 896
BstMBI GATC 2 cut(s) 598, 871
BstNI CCWGG 3 cut(s) 267, 675, 762
BstPI GGTNACC 1 cut(s) 725
BstSCI CCNGG 4 cut(s) 265, 673, 729, 760
BstUI CGCG 5 cut(s) 145, 244, 494, 536, 800
BstX2I RGATCY 1 cut(s) 598
BstXI CCANNNNNNTGG 2 cut(s) 395, 449
BstYI RGATCY 1 cut(s) 598
BsuRI GGCC 1 cut(s) 453
BtgI CCRYGG 1 cut(s) 1022
BtgZI GCGATG 1 cut(s) 859
BtsCI GGATG 4 cut(s) 550, 598, 770, 890
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 931
CciI TCATGA 1 cut(s) 928
CfoI GCGC 4 cut(s) 147, 494, 820, 904
Cfr13I GGNCC 1 cut(s) 469
Csp6I GTAC 4 cut(s) 507, 532, 577, 631
CspCI CAANNNNNGTGG 2 cut(s) 461, 496
CviAII CATG 7 cut(s) 653, 702, 792, 840, 881, 929, 1023
CviJI RGCY 8 cut(s) 170, 343, 453, 569, 678, 685, 1019, 1082
CviKI_1 RGCY 8 cut(s) 170, 343, 453, 569, 678, 685, 1019, 1082
CviQI GTAC 4 cut(s) 507, 532, 577, 631
DdeI CTNAG 3 cut(s) 219, 679, 905
DinI GGCGCC 1 cut(s) 819
DpnI GATC 2 cut(s) 600, 873
DpnII GATC 2 cut(s) 598, 871
DrdI GACNNNNNNGTC 1 cut(s) 734
DseDI GACNNNNNNGTC 1 cut(s) 734
EaeI YGGCCR 1 cut(s) 451
Eam1104I CTCTTC 3 cut(s) 443, 482, 533
EarI CTCTTC 3 cut(s) 443, 482, 533
Eco130I CCWWGG 1 cut(s) 1022
Eco31I GGTCTC 1 cut(s) 896
Eco47I GGWCC 1 cut(s) 469
Eco57I CTGAAG 2 cut(s) 213, 438
Eco88I CYCGRG 1 cut(s) 831
Eco91I GGTNACC 1 cut(s) 725
EcoO65I GGTNACC 1 cut(s) 725
EcoRII CCWGG 3 cut(s) 265, 673, 760
EcoT14I CCWWGG 1 cut(s) 1022
EgeI GGCGCC 1 cut(s) 819
EheI GGCGCC 1 cut(s) 819
ErhI CCWWGG 1 cut(s) 1022
FaeI CATG 7 cut(s) 656, 705, 795, 843, 884, 932, 1026
FalI AAGNNNNNCTT 4 cut(s) 119, 151, 1086, 1118
FaqI GGGAC 2 cut(s) 103, 482
FatI CATG 7 cut(s) 652, 701, 791, 839, 880, 928, 1022
FauI CCCGC 1 cut(s) 249
FauNDI CATATG 1 cut(s) 858
Fnu4HI GCNGC 1 cut(s) 798
FokI GGATG 4 cut(s) 537, 605, 777, 897
Fsp4HI GCNGC 1 cut(s) 798
GlaI GCGC 4 cut(s) 146, 493, 819, 903
GluI GCNGC 1 cut(s) 798
GsuI CTGGAG 1 cut(s) 249
HaeII RGCGCY 1 cut(s) 821
HaeIII GGCC 1 cut(s) 453
HapII CCGG 2 cut(s) 454, 730
HhaI GCGC 4 cut(s) 147, 494, 820, 904
Hin1I GRCGYC 1 cut(s) 818
Hin1II CATG 7 cut(s) 656, 705, 795, 843, 884, 932, 1026
Hin6I GCGC 4 cut(s) 145, 492, 818, 902
HinP1I GCGC 4 cut(s) 145, 492, 818, 902
HinfI GANTC 5 cut(s) 270, 496, 696, 862, 950
HpaII CCGG 2 cut(s) 454, 730
HphI GGTGA 2 cut(s) 191, 737
Hpy188I TCNGA 4 cut(s) 418, 867, 1006, 1071
Hpy188III TCNNGA 8 cut(s) 161, 207, 218, 554, 831, 833, 893, 929
HpyAV CCTTC 2 cut(s) 123, 990
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 5 cut(s) 13, 50, 251, 550, 1047
HpyF3I CTNAG 3 cut(s) 219, 679, 905
Hsp92I GRCGYC 1 cut(s) 818
Hsp92II CATG 7 cut(s) 656, 705, 795, 843, 884, 932, 1026
HspAI GCGC 4 cut(s) 145, 492, 818, 902
KasI GGCGCC 1 cut(s) 817
Kzo9I GATC 2 cut(s) 598, 871
LguI GCTCTTC 2 cut(s) 443, 482
LmnI GCTCC 3 cut(s) 31, 610, 1024
LweI GCATC 4 cut(s) 559, 902, 1034, 1075
MaeIII GTNAC 3 cut(s) 179, 355, 725
MalI GATC 2 cut(s) 600, 873
MboI GATC 2 cut(s) 598, 871
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 2 cut(s) 429, 473
Mly113I GGCGCC 1 cut(s) 818
MlyI GAGTC 1 cut(s) 690
MmeI TCCRAC 2 cut(s) 257, 349
MnlI CCTC 8 cut(s) 39, 151, 273, 375, 534, 711, 716, 798
MseI TTAA 5 cut(s) 126, 132, 393, 405, 645
MslI CAYNNNNRTG 6 cut(s) 18, 393, 447, 555, 618, 844
MspI CCGG 2 cut(s) 454, 730
MspR9I CCNGG 4 cut(s) 267, 675, 731, 762
MvaI CCWGG 3 cut(s) 267, 675, 762
MvnI CGCG 5 cut(s) 145, 244, 494, 536, 800
NarI GGCGCC 1 cut(s) 818
NciI CCSGG 1 cut(s) 731
NcoI CCATGG 1 cut(s) 1022
NdeI CATATG 1 cut(s) 858
NdeII GATC 2 cut(s) 598, 871
NlaIII CATG 7 cut(s) 656, 705, 795, 843, 884, 932, 1026
NlaIV GGNNCC 3 cut(s) 386, 470, 819
NmuCI GTSAC 3 cut(s) 179, 355, 725
OliI CACNNNNGTG 1 cut(s) 18
PaeR7I CTCGAG 1 cut(s) 831
PagI TCATGA 1 cut(s) 928
PciSI GCTCTTC 2 cut(s) 443, 482
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PfeI GAWTC 4 cut(s) 270, 496, 862, 950
PfoI TCCNGGA 1 cut(s) 265
PkrI GCNGC 1 cut(s) 799
PleI GAGTC 1 cut(s) 690
PluTI GGCGCC 1 cut(s) 821
PpsI GAGTC 1 cut(s) 690
PshBI ATTAAT 1 cut(s) 393
Psp6I CCWGG 3 cut(s) 265, 673, 760
PspEI GGTNACC 1 cut(s) 725
PspGI CCWGG 3 cut(s) 265, 673, 760
PspN4I GGNNCC 3 cut(s) 386, 470, 819
PspPI GGNCC 1 cut(s) 469
PsuI RGATCY 1 cut(s) 598
RsaI GTAC 4 cut(s) 508, 533, 578, 632
RsaNI GTAC 4 cut(s) 507, 532, 577, 631
RseI CAYNNNNRTG 6 cut(s) 18, 393, 447, 555, 618, 844
SapI GCTCTTC 2 cut(s) 443, 482
SaqAI TTAA 5 cut(s) 126, 132, 393, 405, 645
SatI GCNGC 1 cut(s) 798
Sau3AI GATC 2 cut(s) 598, 871
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 1 cut(s) 690
ScrFI CCNGG 4 cut(s) 267, 675, 731, 762
SduI GDGCHC 1 cut(s) 28
SfaNI GCATC 4 cut(s) 559, 902, 1034, 1075
SfoI GGCGCC 1 cut(s) 819
Sfr274I CTCGAG 1 cut(s) 831
SinI GGWCC 1 cut(s) 469
SlaI CTCGAG 1 cut(s) 831
SmiMI CAYNNNNRTG 6 cut(s) 18, 393, 447, 555, 618, 844
SmlI CTYRAG 1 cut(s) 831
SmoI CTYRAG 1 cut(s) 831
Sse9I AATT 2 cut(s) 429, 473
SsiI CCGC 4 cut(s) 16, 242, 623, 798
SspDI GGCGCC 1 cut(s) 817
StyD4I CCNGG 4 cut(s) 265, 673, 729, 760
StyI CCWWGG 1 cut(s) 1022
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 4 cut(s) 31, 485, 832, 894
TasI AATT 2 cut(s) 429, 473
TatI WGTACW 3 cut(s) 506, 576, 630
TauI GCSGC 1 cut(s) 800
TfiI GAWTC 4 cut(s) 270, 496, 862, 950
Tru1I TTAA 5 cut(s) 126, 132, 393, 405, 645
Tru9I TTAA 5 cut(s) 126, 132, 393, 405, 645
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 3 cut(s) 179, 355, 725
Tsp45I GTSAC 3 cut(s) 179, 355, 725
TspDTI ATGAA 5 cut(s) 57, 339, 488, 609, 869
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 469
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 1 cut(s) 429
XhoI CTCGAG 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.