RLG00000035239

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002168
Physical Location & Seq
Forward (+)
63399986 .. 63407993
8008 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035239

Sequence Viewer

Length: 1311 bp
ATGAGGAACCTCGAGCTTCCGATCATCGAGCCGGCAGCAAGGAGCTCAAATTCGAAGCAGAGTCGTTCTCCCACGAGCGGCTATGATCTGCGCGTTGCAAAGGTCATCGTCGGCAGCGGTAGAATCGTCCACGTTCATAATTTAACCGGTGGCGGCGAGCGGTGGGCGTCAAAATTGAGCCATGATGAGCTCGGCTCCGTTGTCTCCAAGCCACAACTCTGTAGTCTCCAAGCCTCGACTCCTTTGAATCCTAGCAAGGCGAAAACGAGAGTGGCAGCTTTTCTAACAAAGGTTAGGTTTTCACTTCCATCTTTTGATGTATACTTTCCCGATATGCGTAGAACAACTAACACAAACAAAAGTCTTGAGGATGAAGGATCAGAGGGTGTTCCTAAGATATATGTTCCAACAAATCCTTCTGGTGCTGAAACACTACCACCAGGAATTGTTGTTTCACAAACTGATTTGTATATGCGCAGATTATGGGGTGAACCCAGTGAGGATCTAAAAACAAAGCCAAAGTACTTGGTAACATTTACCGTTGGTATTAATCAGAAGAAAAATATTGATGCAGCAGTTAAAAAGTTCTCTGAGGATTTCACAATCTTGCTTTTTCACTATGATGGCCGGACTAGTGAATGGGATGAATTTGAGTGGTCAAAGAGAGCAATTCATGTTAGTGCAAAGAGACAAGCAAAGTGGTGGTATGCAAAAAGATTTCTGCATCCTGATGTTGTGTCAGCTTATGATTATATATTCATTTGGGATGAAGATTTGGGAGTAGAACACTTCAATGCAGAGAAGTATATTGAGTTGGTTAAGAAATATGGTTTGGAAATCTCTCAACCTGGTCTTGAGCCCAATAATGGTTTGACATGGGAGATGACAAAGAGGAGAGGTGACAGAGAAGTCCACAAGGATACAGAAGAAAAACCGGGCTGGTGTAGTGACCCACATCTTCCCCCTTGTGCAGCGTTTGTGGAAATAATGGCCCCTGTCTTTTCTCGGGAAGCTTGGCGTTGTGTCTGGCATATGATTCAGAATGATTTGGTGCATGGATGGGGATTGGATTTTGCTCTCCGAAGATGTGTAGAGCCTGCACATGAAAAGATTGGCGTAGTTGATTCACAGTGGATTGTTCATCAAGTGATTCCTTCCCTTGGGAGCCAGGGAGAGTCTGAGGATGGAAAATCTCCCTGGGAATCGGTACGTGACATGGTGAGATCAAGGTGCAAAAACGAATGGGCTGAATTCCAGTCTCGCATACTCGGTGCAGACAAGGCATACCTTGCTAAGAGAGGAAGGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

437

Amino Acids

49.6

Weight (kDa)

8.36

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 137 - 427 6.3e-141 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 908
Acc16I TGCGCA 1 cut(s) 476
AccBSI CCGCTC 2 cut(s) 78, 160
AccI GTMKAC 1 cut(s) 321
AccII CGCG 1 cut(s) 93
AciI CCGC 4 cut(s) 78, 117, 153, 160
AclWI GGATC 2 cut(s) 385, 510
AcoI YGGCCR 1 cut(s) 625
AcsI RAATTY 3 cut(s) 49, 647, 1250
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 2 cut(s) 524, 1209
AfiI CCNNNNNNNGG 3 cut(s) 77, 866, 1160
AgeI ACCGGT 1 cut(s) 146
AgsI TTSAA 2 cut(s) 247, 793
AhlI ACTAGT 1 cut(s) 632
AjnI CCWGG 4 cut(s) 439, 847, 1167, 1196
AjuI GAANNNNNNNTTGG 4 cut(s) 400, 432, 815, 847
AluBI AGCT 6 cut(s) 16, 45, 190, 278, 743, 1013
AluI AGCT 6 cut(s) 16, 45, 190, 278, 743, 1013
Alw21I GWGCWC 2 cut(s) 47, 192
Alw26I GTCTC 4 cut(s) 208, 230, 682, 1263
AlwI GGATC 2 cut(s) 385, 510
Ama87I CYCGRG 2 cut(s) 11, 1005
AoxI GGCC 2 cut(s) 625, 990
ApeKI GCWGC 5 cut(s) 35, 114, 275, 572, 971
ApoI RAATTY 3 cut(s) 49, 647, 1250
AseI ATTAAT 1 cut(s) 549
AsiGI ACCGGT 1 cut(s) 146
AspLEI GCGC 2 cut(s) 93, 477
AspS9I GGNCC 1 cut(s) 991
AsuC2I CCSGG 1 cut(s) 936
AsuHPI GGTGA 3 cut(s) 500, 911, 1231
AsuII TTCGAA 1 cut(s) 53
AvaI CYCGRG 2 cut(s) 11, 1005
BanII GRGCYC 3 cut(s) 47, 192, 861
BauI CACGAG 1 cut(s) 73
Bbv12I GWGCWC 2 cut(s) 47, 192
BbvI GCAGC 5 cut(s) 47, 126, 287, 584, 983
BccI CCATC 4 cut(s) 316, 617, 1053, 1178
BciT130I CCWGG 4 cut(s) 441, 849, 1169, 1198
BciVI GTATCC 1 cut(s) 913
BcnI CCSGG 1 cut(s) 936
BcoDI GTCTC 4 cut(s) 208, 230, 682, 1263
BcuI ACTAGT 1 cut(s) 632
BfaI CTAG 2 cut(s) 252, 633
BfmI CTRYAG 1 cut(s) 220
BfuI GTATCC 1 cut(s) 913
BisI GCNGC 7 cut(s) 36, 79, 115, 154, 276, 573, 972
BlsI GCNGC 7 cut(s) 37, 80, 116, 155, 277, 574, 973
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 5 cut(s) 441, 849, 936, 1169, 1198
BmeT110I CYCGRG 2 cut(s) 11, 1005
BmgT120I GGNCC 1 cut(s) 991
BmiI GGNNCC 4 cut(s) 8, 196, 993, 1166
BmrFI CCNGG 5 cut(s) 441, 849, 936, 1169, 1198
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 2 cut(s) 559, 733
BmuI ACTGGG 1 cut(s) 489
BplI GAGNNNNNCTC 4 cut(s) 52, 84, 179, 211
Bpu14I TTCGAA 1 cut(s) 53
BpuEI CTTGAG 2 cut(s) 386, 875
BpuMI CCSGG 1 cut(s) 936
BsaAI YACGTR 1 cut(s) 1211
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 4 cut(s) 1159, 1168, 1196, 1197
BsaWI WCCGGW 1 cut(s) 146
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 866, 1160
Bse118I RCCGGY 2 cut(s) 31, 146
Bse1I ACTGG 2 cut(s) 495, 1255
BseBI CCWGG 4 cut(s) 441, 849, 1169, 1198
BseDI CCNNGG 4 cut(s) 1159, 1168, 1196, 1197
BseGI GGATG 6 cut(s) 376, 649, 724, 772, 1064, 1189
BseLI CCNNNNNNNGG 3 cut(s) 77, 866, 1160
BseMII CTCAG 2 cut(s) 582, 1170
BseNI ACTGG 2 cut(s) 495, 1255
BseRI GAGGAG 1 cut(s) 907
BseXI GCAGC 5 cut(s) 47, 126, 287, 584, 983
BsgI GTGCAG 3 cut(s) 990, 1083, 1293
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 627, 992
BshTI ACCGGT 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 47, 192
BsiHKCI CYCGRG 2 cut(s) 11, 1005
BsiSI CCGG 4 cut(s) 32, 147, 628, 935
BslI CCNNNNNNNGG 3 cut(s) 77, 866, 1160
BsmAI GTCTC 4 cut(s) 208, 230, 682, 1263
BsnI GGCC 2 cut(s) 627, 992
BsoBI CYCGRG 2 cut(s) 11, 1005
Bsp119I TTCGAA 1 cut(s) 53
Bsp1286I GDGCHC 3 cut(s) 47, 192, 861
Bsp143I GATC 5 cut(s) 21, 85, 377, 502, 1223
BspACI CCGC 4 cut(s) 78, 117, 153, 160
BspANI GGCC 2 cut(s) 627, 992
BspCNI CTCAG 2 cut(s) 583, 1171
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 4 cut(s) 8, 196, 993, 1166
BspPI GGATC 2 cut(s) 385, 510
BspT104I TTCGAA 1 cut(s) 53
BsrBI CCGCTC 2 cut(s) 78, 160
BsrFI RCCGGY 2 cut(s) 31, 146
BsrI ACTGG 2 cut(s) 495, 1255
BssAI RCCGGY 2 cut(s) 31, 146
BssECI CCNNGG 4 cut(s) 1159, 1168, 1196, 1197
BssMI GATC 5 cut(s) 21, 85, 377, 502, 1223
BssNAI GTATAC 1 cut(s) 322
BssNI GRCGYC 1 cut(s) 167
BssSI CACGAG 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 1159
Bst1107I GTATAC 1 cut(s) 322
Bst2BI CACGAG 1 cut(s) 73
Bst2UI CCWGG 4 cut(s) 441, 849, 1169, 1198
Bst4CI ACNGT 2 cut(s) 541, 1131
BstACI GRCGYC 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 1289
BstBAI YACGTR 1 cut(s) 1211
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 33, 158, 1098
BstDEI CTNAG 4 cut(s) 393, 591, 1179, 1293
BstF5I GGATG 6 cut(s) 376, 649, 724, 772, 1064, 1189
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 2 cut(s) 93, 477
BstKTI GATC 5 cut(s) 24, 88, 380, 505, 1226
BstMAI GTCTC 4 cut(s) 208, 230, 682, 1263
BstMBI GATC 5 cut(s) 21, 85, 377, 502, 1223
BstMWI GCNNNNNNNGC 2 cut(s) 1280, 1289
BstNI CCWGG 4 cut(s) 441, 849, 1169, 1198
BstSCI CCNGG 5 cut(s) 439, 847, 934, 1167, 1196
BstSFI CTRYAG 1 cut(s) 220
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 5 cut(s) 47, 126, 287, 584, 983
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BstZ17I GTATAC 1 cut(s) 322
BsuI GTATCC 1 cut(s) 913
BsuRI GGCC 2 cut(s) 627, 992
BtsCI GGATG 6 cut(s) 376, 649, 724, 772, 1064, 1189
BtsIMutI CAGTG 2 cut(s) 502, 1136
Cac8I GCNNGC 3 cut(s) 33, 158, 1098
CfoI GCGC 2 cut(s) 93, 477
Cfr10I RCCGGY 2 cut(s) 31, 146
Cfr13I GGNCC 1 cut(s) 991
CseI GACGC 1 cut(s) 156
CsiI ACCWGGT 1 cut(s) 847
Csp6I GTAC 2 cut(s) 523, 1208
CspAI ACCGGT 1 cut(s) 146
CspCI CAANNNNNGTGG 2 cut(s) 680, 715
CviAII CATG 6 cut(s) 182, 674, 876, 1055, 1103, 1216
CviQI GTAC 2 cut(s) 523, 1208
DdeI CTNAG 4 cut(s) 393, 591, 1179, 1293
DpnI GATC 5 cut(s) 23, 87, 379, 504, 1225
DpnII GATC 5 cut(s) 21, 85, 377, 502, 1223
DrdI GACNNNNNNGTC 1 cut(s) 908
DseDI GACNNNNNNGTC 1 cut(s) 908
EaeI YGGCCR 1 cut(s) 625
Ecl136II GAGCTC 2 cut(s) 45, 190
Eco130I CCWWGG 1 cut(s) 1159
Eco24I GRGCYC 3 cut(s) 47, 192, 861
Eco53kI GAGCTC 2 cut(s) 45, 190
Eco88I CYCGRG 2 cut(s) 11, 1005
EcoICRI GAGCTC 2 cut(s) 45, 190
EcoRI GAATTC 1 cut(s) 1250
EcoRII CCWGG 4 cut(s) 439, 847, 1167, 1196
EcoT14I CCWWGG 1 cut(s) 1159
EcoT38I GRGCYC 3 cut(s) 47, 192, 861
ErhI CCWWGG 1 cut(s) 1159
FaeI CATG 6 cut(s) 185, 677, 879, 1058, 1106, 1219
FatI CATG 6 cut(s) 181, 673, 875, 1054, 1102, 1215
FauNDI CATATG 1 cut(s) 1032
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 7 cut(s) 36, 79, 115, 154, 276, 573, 972
FokI GGATG 6 cut(s) 383, 656, 711, 779, 1071, 1196
FriOI GRGCYC 3 cut(s) 47, 192, 861
Fsp4HI GCNGC 7 cut(s) 36, 79, 115, 154, 276, 573, 972
FspBI CTAG 2 cut(s) 252, 633
FspI TGCGCA 1 cut(s) 476
GlaI GCGC 2 cut(s) 92, 476
GluI GCNGC 7 cut(s) 36, 79, 115, 154, 276, 573, 972
HaeIII GGCC 2 cut(s) 627, 992
HapII CCGG 4 cut(s) 32, 147, 628, 935
HgaI GACGC 1 cut(s) 156
HhaI GCGC 2 cut(s) 93, 477
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 6 cut(s) 185, 677, 879, 1058, 1106, 1219
Hin6I GCGC 2 cut(s) 91, 475
HinP1I GCGC 2 cut(s) 91, 475
HindIII AAGCTT 1 cut(s) 1011
HinfI GANTC 9 cut(s) 61, 123, 238, 247, 1036, 1124, 1150, 1175, 1202
HpaII CCGG 4 cut(s) 32, 147, 628, 935
HphI GGTGA 3 cut(s) 500, 911, 1231
Hpy166II GTNNAC 4 cut(s) 130, 322, 491, 913
Hpy188I TCNGA 7 cut(s) 21, 382, 555, 592, 1041, 1082, 1180
Hpy188III TCNNGA 5 cut(s) 329, 365, 728, 854, 1007
Hpy8I GTNNAC 4 cut(s) 130, 322, 491, 913
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 4 cut(s) 368, 426, 1164, 1296
HpyCH4III ACNGT 2 cut(s) 541, 1131
HpyCH4IV ACGT 2 cut(s) 132, 1210
HpyF10VI GCNNNNNNNGC 2 cut(s) 1280, 1289
HpyF3I CTNAG 4 cut(s) 393, 591, 1179, 1293
HpySE526I ACGT 2 cut(s) 132, 1210
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 6 cut(s) 185, 677, 879, 1058, 1106, 1219
HspAI GCGC 2 cut(s) 91, 475
KroI GCCGGC 1 cut(s) 31
KroNI GCCGGC 1 cut(s) 33
Kzo9I GATC 5 cut(s) 21, 85, 377, 502, 1223
LmnI GCTCC 3 cut(s) 42, 200, 1164
Lsp1109I GCAGC 5 cut(s) 47, 126, 287, 584, 983
LweI GCATC 2 cut(s) 559, 733
MabI ACCWGGT 1 cut(s) 847
MaeI CTAG 2 cut(s) 252, 633
MaeII ACGT 2 cut(s) 132, 1210
MaeIII GTNAC 4 cut(s) 529, 899, 947, 1211
MalI GATC 5 cut(s) 23, 87, 379, 504, 1225
MbiI CCGCTC 2 cut(s) 78, 160
MboI GATC 5 cut(s) 21, 85, 377, 502, 1223
MboII GAAGA 5 cut(s) 568, 782, 938, 950, 1095
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 3 cut(s) 47, 192, 861
MluCI AATT 7 cut(s) 49, 139, 173, 444, 647, 669, 1250
MlyI GAGTC 3 cut(s) 70, 232, 1184
MmeI TCCRAC 1 cut(s) 431
MroNI GCCGGC 1 cut(s) 31
MseI TTAA 4 cut(s) 143, 549, 579, 819
MslI CAYNNNNRTG 4 cut(s) 621, 678, 729, 792
MspA1I CMGCKG 1 cut(s) 117
MspI CCGG 4 cut(s) 32, 147, 628, 935
MspR9I CCNGG 5 cut(s) 441, 849, 936, 1169, 1198
MvaI CCWGG 4 cut(s) 441, 849, 1169, 1198
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 1280, 1289
NaeI GCCGGC 1 cut(s) 33
NciI CCSGG 1 cut(s) 936
NdeI CATATG 1 cut(s) 1032
NdeII GATC 5 cut(s) 21, 85, 377, 502, 1223
NgoMIV GCCGGC 1 cut(s) 31
NlaIII CATG 6 cut(s) 185, 677, 879, 1058, 1106, 1219
NlaIV GGNNCC 4 cut(s) 8, 196, 993, 1166
NmeAIII GCCGAG 1 cut(s) 171
NmuCI GTSAC 3 cut(s) 899, 947, 1211
NsbI TGCGCA 1 cut(s) 476
NspV TTCGAA 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 11
PasI CCCWGGG 1 cut(s) 1197
PdiI GCCGGC 1 cut(s) 33
PfeI GAWTC 6 cut(s) 123, 247, 1036, 1124, 1150, 1202
PinAI ACCGGT 1 cut(s) 146
PkrI GCNGC 7 cut(s) 37, 80, 116, 155, 277, 574, 973
PleI GAGTC 3 cut(s) 69, 232, 1183
PpsI GAGTC 3 cut(s) 69, 232, 1183
Ppu21I YACGTR 1 cut(s) 1211
PshBI ATTAAT 1 cut(s) 549
Psp124BI GAGCTC 2 cut(s) 47, 192
Psp6I CCWGG 4 cut(s) 439, 847, 1167, 1196
PspGI CCWGG 4 cut(s) 439, 847, 1167, 1196
PspN4I GGNNCC 4 cut(s) 8, 196, 993, 1166
PspPI GGNCC 1 cut(s) 991
PspXI VCTCGAGB 1 cut(s) 11
PsuI RGATCY 1 cut(s) 502
RsaI GTAC 2 cut(s) 524, 1209
RsaNI GTAC 2 cut(s) 523, 1208
RseI CAYNNNNRTG 4 cut(s) 621, 678, 729, 792
SacI GAGCTC 2 cut(s) 47, 192
SaqAI TTAA 4 cut(s) 143, 549, 579, 819
SatI GCNGC 7 cut(s) 36, 79, 115, 154, 276, 573, 972
Sau3AI GATC 5 cut(s) 21, 85, 377, 502, 1223
Sau96I GGNCC 1 cut(s) 991
ScaI AGTACT 1 cut(s) 524
SchI GAGTC 3 cut(s) 70, 232, 1184
ScrFI CCNGG 5 cut(s) 441, 849, 936, 1169, 1198
SduI GDGCHC 3 cut(s) 47, 192, 861
SexAI ACCWGGT 1 cut(s) 847
SfaNI GCATC 2 cut(s) 559, 733
SfcI CTRYAG 1 cut(s) 220
Sfr274I CTCGAG 1 cut(s) 11
SfuI TTCGAA 1 cut(s) 53
SlaI CTCGAG 1 cut(s) 11
SmiMI CAYNNNNRTG 4 cut(s) 621, 678, 729, 792
SmlI CTYRAG 3 cut(s) 11, 365, 854
SmoI CTYRAG 3 cut(s) 11, 365, 854
SpeI ACTAGT 1 cut(s) 632
Sse9I AATT 7 cut(s) 49, 139, 173, 444, 647, 669, 1250
SsiI CCGC 4 cut(s) 78, 117, 153, 160
SspI AATATT 1 cut(s) 565
SspMI CTAG 2 cut(s) 252, 633
SstI GAGCTC 2 cut(s) 47, 192
StyD4I CCNGG 5 cut(s) 439, 847, 934, 1167, 1196
StyI CCWWGG 1 cut(s) 1159
TaaI ACNGT 2 cut(s) 541, 1131
TaiI ACGT 2 cut(s) 135, 1213
TaqI TCGA 4 cut(s) 12, 27, 53, 236
TasI AATT 7 cut(s) 49, 139, 173, 444, 647, 669, 1250
TatI WGTACW 1 cut(s) 522
TauI GCSGC 2 cut(s) 81, 156
TfiI GAWTC 6 cut(s) 123, 247, 1036, 1124, 1150, 1202
Tru1I TTAA 4 cut(s) 143, 549, 579, 819
Tru9I TTAA 4 cut(s) 143, 549, 579, 819
TscAI CASTG 2 cut(s) 502, 1136
TseFI GTSAC 3 cut(s) 899, 947, 1211
TseI GCWGC 5 cut(s) 35, 114, 275, 572, 971
Tsp45I GTSAC 3 cut(s) 899, 947, 1211
TspDTI ATGAA 8 cut(s) 125, 387, 660, 662, 748, 783, 1119, 1130
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 2 cut(s) 502, 1136
VspI ATTAAT 1 cut(s) 549
XapI RAATTY 3 cut(s) 49, 647, 1250
XhoI CTCGAG 1 cut(s) 11
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 2 cut(s) 252, 633
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.