Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017086

Physical Location & Seq

Genomic Coordinates Forward (+)

2538615 .. 2539661

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAAAAATAGGATGGATTGTGAGGAAAACGTTGGGAATGAATCGCTAGTTCTGATAAAACAAGGAGCAGAAGCTAGGGTATTGGAGTCTACATTTTCTGGAAGAAGATCCATTGTGAAAGAACGTTTCTCGAAGAAATATCGCCACCCGATTTTGGATGCCAAACTCACACTCAAACGCTTGTATGACAAAGGCAAGAAAGCTAGGGGTTTGTACTCCAGTCATCTATGCTGTGGATACTCTGCTTCACTCTTTAACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000278 GO:0000281 GO:0000282 GO:0000408 GO:0000722 GO:0000723 GO:0000910 GO:0001558 GO:0002039 GO:0002949 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006310 GO:0006312 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007163 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016043 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019954 GO:0022402 GO:0023051 GO:0023056 GO:0030010 GO:0030154 GO:0030307 GO:0030435 GO:0030436 GO:0030447 GO:0030448 GO:0030554 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032200 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0036211 GO:0040007 GO:0040008 GO:0040014 GO:0040018 GO:0042592 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043934 GO:0043936 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048638 GO:0048639 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051276 GO:0051301 GO:0060249 GO:0060255 GO:0061640 GO:0065007 GO:0065008 GO:0070013 GO:0070525 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901796 GO:1902531 GO:1902533 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kdo Pkinase

Protein Analysis

87

Amino Acids

9.94

Weight (kDa)

9.79

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08120
rosa_chinensis	RchiOBHm_Chr3g0476231 RchiOBHm_Chr5g0022281 RchiOBHm_Chr5g0022321
rosa_laevigata	RLG00000019416
rosa_multiflora	Rmu_sc0025482.1_g000003
rosa_rugosa	Rorug05G0073100.1 Rorug05G0073200 Rorug05G0073300
rosa_samantha	Rh3BG235400 Rh5AG160000 Rh5CG173800
rosa_wichuraiana	Rw5G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	89
AclI	AACGTT	2 cut(s)	30, 124
AclWI	GGATC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	154
AluBI	AGCT	2 cut(s)	74, 203
AluI	AGCT	2 cut(s)	74, 203
AlwI	GGATC	1 cut(s)	102
BccI	CCATC	1 cut(s)	7
BciVI	GTATCC	1 cut(s)	230
BfaI	CTAG	3 cut(s)	47, 75, 204
BfuI	GTATCC	1 cut(s)	230
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	18, 163
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseNI	ACTGG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	107
BspPI	GGATC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	18, 163
BstKTI	GATC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	18, 163
Csp6I	GTAC	1 cut(s)	214
CviJI	RGCY	2 cut(s)	74, 203
CviKI_1	RGCY	2 cut(s)	74, 203
CviQI	GTAC	1 cut(s)	214
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
FaiI	YATR	2 cut(s)	186, 229
FblI	GTMKAC	1 cut(s)	89
FokI	GGATG	2 cut(s)	25, 170
FspBI	CTAG	3 cut(s)	47, 75, 204
GsuI	CTGGAG	1 cut(s)	202
HinfI	GANTC	2 cut(s)	41, 86
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	2 cut(s)	99, 130
Hpy8I	GTNNAC	1 cut(s)	90
HpyCH4IV	ACGT	2 cut(s)	30, 124
HpySE526I	ACGT	2 cut(s)	30, 124
Kzo9I	GATC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	2 cut(s)	84, 232
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	3 cut(s)	47, 75, 204
MaeII	ACGT	2 cut(s)	30, 124
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MboII	GAAGA	3 cut(s)	114, 117, 145
MflI	RGATCY	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	1 cut(s)	16
MseI	TTAA	1 cut(s)	255
NdeII	GATC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	41
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp1406I	AACGTT	2 cut(s)	30, 124
PsuI	RGATCY	1 cut(s)	107
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	95
SetI	ASST	4 cut(s)	33, 76, 127, 205
SfaNI	GCATC	1 cut(s)	148
SspMI	CTAG	3 cut(s)	47, 75, 204
TaiI	ACGT	2 cut(s)	33, 127
TaqI	TCGA	1 cut(s)	131
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TspDTI	ATGAA	2 cut(s)	17, 54
XmiI	GTMKAC	1 cut(s)	89
XspI	CTAG	3 cut(s)	47, 75, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.