RIO1 family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08120 |
| rosa_chinensis | RchiOBHm_Chr3g0476231 RchiOBHm_Chr5g0022281 RchiOBHm_Chr5g0022321 |
| rosa_laevigata | RLG00000019416 |
| rosa_multiflora | Rmu_sc0025482.1_g000003 |
| rosa_rugosa | Rorug05G0073100.1 Rorug05G0073200 Rorug05G0073300 |
| rosa_samantha | Rh3BG235400 Rh5AG160000 Rh5CG173800 |
| rosa_wichuraiana | Rw5G014300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2913 |
| AarI | CACCTGC | 2 cut(s) | 2393, 2407 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2342 |
| Acc16I | TGCGCA | 1 cut(s) | 2353 |
| Acc36I | ACCTGC | 2 cut(s) | 2393, 2407 |
| Acc65I | GGTACC | 1 cut(s) | 881 |
| AccB1I | GGYRCC | 1 cut(s) | 881 |
| AccI | GTMKAC | 2 cut(s) | 1113, 2565 |
| AccII | CGCG | 3 cut(s) | 374, 383, 676 |
| AclWI | GGATC | 6 cut(s) | 548, 659, 1072, 1928, 2225, 2448 |
| AcoI | YGGCCR | 4 cut(s) | 278, 300, 900, 2962 |
| AcsI | RAATTY | 3 cut(s) | 1124, 1168, 2707 |
| AcuI | CTGAAG | 5 cut(s) | 411, 1335, 1416, 2465, 2862 |
| AdeI | CACNNNGTG | 1 cut(s) | 1139 |
| AfaI | GTAC | 7 cut(s) | 291, 296, 527, 883, 914, 1483, 2636 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 608, 757, 2402, 2903 |
| AflIII | ACRYGT | 1 cut(s) | 674 |
| AhlI | ACTAGT | 1 cut(s) | 2720 |
| AjnI | CCWGG | 6 cut(s) | 484, 556, 655, 1612, 2491, 2890 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2031, 2063 |
| Alw21I | GWGCWC | 1 cut(s) | 1240 |
| Alw26I | GTCTC | 2 cut(s) | 2310, 2881 |
| AlwI | GGATC | 6 cut(s) | 548, 659, 1072, 1928, 2225, 2448 |
| AoxI | GGCC | 7 cut(s) | 203, 278, 300, 900, 2600, 2606, 2962 |
| ApeKI | GCWGC | 3 cut(s) | 362, 1454, 1886 |
| ApoI | RAATTY | 3 cut(s) | 1124, 1168, 2707 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 437, 469 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1677 |
| Asp718I | GGTACC | 1 cut(s) | 881 |
| AspA2I | CCTAGG | 2 cut(s) | 320, 1810 |
| AspLEI | GCGC | 3 cut(s) | 1005, 1895, 2354 |
| AspS9I | GGNCC | 4 cut(s) | 1355, 1807, 2600, 2894 |
| AsuC2I | CCSGG | 2 cut(s) | 603, 2098 |
| AsuHPI | GGTGA | 5 cut(s) | 182, 617, 851, 1735, 2569 |
| AvaII | GGWCC | 3 cut(s) | 1355, 1807, 2894 |
| AvrII | CCTAGG | 2 cut(s) | 320, 1810 |
| AxyI | CCTNAGG | 1 cut(s) | 195 |
| BaeGI | GKGCMC | 2 cut(s) | 1844, 2802 |
| BalI | TGGCCA | 2 cut(s) | 302, 902 |
| BanI | GGYRCC | 1 cut(s) | 881 |
| BanII | GRGCYC | 2 cut(s) | 1240, 2844 |
| BbsI | GAAGAC | 6 cut(s) | 632, 1221, 1596, 2039, 2259, 2429 |
| Bbv12I | GWGCWC | 1 cut(s) | 1240 |
| BbvCI | CCTCAGC | 1 cut(s) | 891 |
| BbvI | GCAGC | 3 cut(s) | 349, 1441, 1873 |
| BceAI | ACGGC | 2 cut(s) | 895, 2011 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2372, 2406 |
| BciT130I | CCWGG | 6 cut(s) | 486, 558, 657, 1614, 2493, 2892 |
| BciVI | GTATCC | 1 cut(s) | 51 |
| BclI | TGATCA | 2 cut(s) | 871, 2641 |
| BcnI | CCSGG | 2 cut(s) | 603, 2098 |
| BcoDI | GTCTC | 2 cut(s) | 2310, 2881 |
| BcuI | ACTAGT | 1 cut(s) | 2720 |
| BfaI | CTAG | 7 cut(s) | 321, 1386, 1811, 2670, 2721, 2972, 2977 |
| BfmI | CTRYAG | 2 cut(s) | 19, 2400 |
| BfoI | RGCGCY | 1 cut(s) | 1896 |
| BfuAI | ACCTGC | 2 cut(s) | 2393, 2407 |
| BfuI | GTATCC | 1 cut(s) | 51 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 323 |
| BisI | GCNGC | 8 cut(s) | 278, 363, 375, 819, 1253, 1455, 1887, 2526 |
| BlnI | CCTAGG | 2 cut(s) | 320, 1810 |
| BlsI | GCNGC | 8 cut(s) | 279, 364, 376, 820, 1254, 1456, 1888, 2527 |
| BmcAI | AGTACT | 2 cut(s) | 527, 1483 |
| Bme1390I | CCNGG | 8 cut(s) | 486, 558, 603, 657, 1614, 2098, 2493, 2892 |
| Bme18I | GGWCC | 3 cut(s) | 1355, 1807, 2894 |
| BmgT120I | GGNCC | 4 cut(s) | 1355, 1807, 2600, 2894 |
| BmiI | GGNNCC | 7 cut(s) | 9, 75, 883, 2486, 2497, 2601, 2874 |
| BmrFI | CCNGG | 8 cut(s) | 486, 558, 603, 657, 1614, 2098, 2493, 2892 |
| BmrI | ACTGGG | 1 cut(s) | 1145 |
| BmuI | ACTGGG | 1 cut(s) | 1145 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1812, 2040 |
| BpiI | GAAGAC | 6 cut(s) | 632, 1221, 1596, 2039, 2259, 2429 |
| BpmI | CTGGAG | 2 cut(s) | 1094, 2961 |
| Bpu10I | CCTNAGC | 1 cut(s) | 891 |
| BpuEI | CTTGAG | 5 cut(s) | 158, 1019, 1787, 2673, 2886 |
| BpuMI | CCSGG | 2 cut(s) | 603, 2098 |
| Bsa29I | ATCGAT | 1 cut(s) | 1327 |
| BsaBI | GATNNNNATC | 2 cut(s) | 855, 870 |
| BsaI | GGTCTC | 2 cut(s) | 2310, 2881 |
| BsaJI | CCNNGG | 5 cut(s) | 320, 1278, 1810, 2038, 2603 |
| BsaWI | WCCGGW | 1 cut(s) | 103 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2857, 2887 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 608, 757, 2402, 2903 |
| Bse1I | ACTGG | 4 cut(s) | 885, 916, 1140, 2541 |
| Bse21I | CCTNAGG | 1 cut(s) | 195 |
| Bse3DI | GCAATG | 2 cut(s) | 518, 679 |
| Bse8I | GATNNNNATC | 2 cut(s) | 855, 870 |
| BseBI | CCWGG | 6 cut(s) | 486, 558, 657, 1614, 2493, 2892 |
| BseCI | ATCGAT | 1 cut(s) | 1327 |
| BseDI | CCNNGG | 5 cut(s) | 320, 1278, 1810, 2038, 2603 |
| BseJI | GATNNNNATC | 2 cut(s) | 855, 870 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 608, 757, 2402, 2903 |
| BseMI | GCAATG | 2 cut(s) | 518, 679 |
| BseMII | CTCAG | 7 cut(s) | 186, 882, 1461, 1673, 2046, 2771, 2867 |
| BseNI | ACTGG | 4 cut(s) | 885, 916, 1140, 2541 |
| BseRI | GAGGAG | 4 cut(s) | 83, 364, 425, 2102 |
| BseSI | GKGCMC | 2 cut(s) | 1844, 2802 |
| BseX3I | CGGCCG | 1 cut(s) | 278 |
| BseXI | GCAGC | 3 cut(s) | 349, 1441, 1873 |
| BseYI | CCCAGC | 1 cut(s) | 1882 |
| BsgI | GTGCAG | 2 cut(s) | 756, 2436 |
| Bsh1236I | CGCG | 3 cut(s) | 374, 383, 676 |
| Bsh1285I | CGRYCG | 1 cut(s) | 281 |
| BshFI | GGCC | 7 cut(s) | 205, 280, 302, 902, 2602, 2608, 2964 |
| BshNI | GGYRCC | 1 cut(s) | 881 |
| BshVI | ATCGAT | 1 cut(s) | 1327 |
| BsiEI | CGRYCG | 1 cut(s) | 281 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1240 |
| BsiSI | CCGG | 6 cut(s) | 11, 104, 602, 2098, 2277, 2965 |
| BslFI | GGGAC | 1 cut(s) | 2661 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 608, 757, 2402, 2903 |
| BsmAI | GTCTC | 2 cut(s) | 2310, 2881 |
| BsmFI | GGGAC | 1 cut(s) | 2661 |
| BsmI | GAATGC | 2 cut(s) | 2664, 2731 |
| BsnI | GGCC | 7 cut(s) | 205, 280, 302, 902, 2602, 2608, 2964 |
| Bso31I | GGTCTC | 2 cut(s) | 2310, 2881 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1240, 1844, 2802, 2844 |
| Bsp1407I | TGTACA | 2 cut(s) | 294, 2634 |
| BspANI | GGCC | 7 cut(s) | 205, 280, 302, 902, 2602, 2608, 2964 |
| BspCNI | CTCAG | 7 cut(s) | 187, 883, 1462, 1672, 2047, 2770, 2866 |
| BspDI | ATCGAT | 1 cut(s) | 1327 |
| BspFNI | CGCG | 3 cut(s) | 374, 383, 676 |
| BspHI | TCATGA | 1 cut(s) | 2782 |
| BspLI | GGNNCC | 7 cut(s) | 9, 75, 883, 2486, 2497, 2601, 2874 |
| BspMAI | CTGCAG | 1 cut(s) | 2404 |
| BspMI | ACCTGC | 2 cut(s) | 2393, 2407 |
| BspPI | GGATC | 6 cut(s) | 548, 659, 1072, 1928, 2225, 2448 |
| BspT107I | GGYRCC | 1 cut(s) | 881 |
| BspTNI | GGTCTC | 2 cut(s) | 2310, 2881 |
| BsrDI | GCAATG | 2 cut(s) | 518, 679 |
| BsrGI | TGTACA | 2 cut(s) | 294, 2634 |
| BsrI | ACTGG | 4 cut(s) | 885, 916, 1140, 2541 |
| BssECI | CCNNGG | 5 cut(s) | 320, 1278, 1810, 2038, 2603 |
| BssNAI | GTATAC | 1 cut(s) | 1114 |
| BssT1I | CCWWGG | 4 cut(s) | 320, 1278, 1810, 2038 |
| Bst1107I | GTATAC | 1 cut(s) | 1114 |
| Bst2UI | CCWGG | 6 cut(s) | 486, 558, 657, 1614, 2493, 2892 |
| Bst4CI | ACNGT | 5 cut(s) | 294, 1380, 1998, 2243, 2428 |
| Bst6I | CTCTTC | 1 cut(s) | 390 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1790 |
| BstAUI | TGTACA | 2 cut(s) | 294, 2634 |
| BstC8I | GCNNGC | 9 cut(s) | 717, 1163, 1257, 1275, 1423, 1891, 2451, 2595, 2802 |
| BstDEI | CTNAG | 9 cut(s) | 195, 539, 891, 938, 1470, 1659, 2055, 2757, 2853 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 755, 2901 |
| BstFNI | CGCG | 3 cut(s) | 374, 383, 676 |
| BstH2I | RGCGCY | 1 cut(s) | 1896 |
| BstHHI | GCGC | 3 cut(s) | 1005, 1895, 2354 |
| BstMAI | GTCTC | 2 cut(s) | 2310, 2881 |
| BstMCI | CGRYCG | 1 cut(s) | 281 |
| BstNI | CCWGG | 6 cut(s) | 486, 558, 657, 1614, 2493, 2892 |
| BstNSI | RCATGY | 1 cut(s) | 244 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1812, 2040 |
| BstSCI | CCNGG | 8 cut(s) | 484, 556, 601, 655, 1612, 2096, 2491, 2890 |
| BstSFI | CTRYAG | 2 cut(s) | 19, 2400 |
| BstSLI | GKGCMC | 2 cut(s) | 1844, 2802 |
| BstUI | CGCG | 3 cut(s) | 374, 383, 676 |
| BstV1I | GCAGC | 3 cut(s) | 349, 1441, 1873 |
| BstV2I | GAAGAC | 6 cut(s) | 632, 1221, 1596, 2039, 2259, 2429 |
| BstX2I | RGATCY | 2 cut(s) | 1077, 2440 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2939 |
| BstYI | RGATCY | 2 cut(s) | 1077, 2440 |
| BstZ17I | GTATAC | 1 cut(s) | 1114 |
| BstZI | CGGCCG | 1 cut(s) | 278 |
| Bsu15I | ATCGAT | 1 cut(s) | 1327 |
| Bsu36I | CCTNAGG | 1 cut(s) | 195 |
| BsuI | GTATCC | 1 cut(s) | 51 |
| BsuRI | GGCC | 7 cut(s) | 205, 280, 302, 902, 2602, 2608, 2964 |
| BsuTUI | ATCGAT | 1 cut(s) | 1327 |
| BtsI | GCAGTG | 1 cut(s) | 768 |
| BtsIMutI | CAGTG | 5 cut(s) | 242, 768, 892, 1133, 2248 |
| BveI | ACCTGC | 2 cut(s) | 2393, 2407 |
| Cac8I | GCNNGC | 9 cut(s) | 717, 1163, 1257, 1275, 1423, 1891, 2451, 2595, 2802 |
| CciI | TCATGA | 1 cut(s) | 2782 |
| CfoI | GCGC | 3 cut(s) | 1005, 1895, 2354 |
| Cfr13I | GGNCC | 4 cut(s) | 1355, 1807, 2600, 2894 |
| ClaI | ATCGAT | 1 cut(s) | 1327 |
| CseI | GACGC | 3 cut(s) | 380, 389, 665 |
| CsiI | ACCWGGT | 1 cut(s) | 2890 |
| Csp6I | GTAC | 7 cut(s) | 290, 295, 526, 882, 913, 1482, 2635 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2613, 2648 |
| CviQI | GTAC | 7 cut(s) | 290, 295, 526, 882, 913, 1482, 2635 |
| DdeI | CTNAG | 9 cut(s) | 195, 539, 891, 938, 1470, 1659, 2055, 2757, 2853 |
| DraI | TTTAAA | 2 cut(s) | 1521, 1852 |
| DraIII | CACNNNGTG | 1 cut(s) | 1139 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2342 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2342 |
| EaeI | YGGCCR | 4 cut(s) | 278, 300, 900, 2962 |
| EagI | CGGCCG | 1 cut(s) | 278 |
| Eam1104I | CTCTTC | 1 cut(s) | 390 |
| EarI | CTCTTC | 1 cut(s) | 390 |
| EciI | GGCGGA | 3 cut(s) | 392, 429, 2497 |
| Ecl136II | GAGCTC | 1 cut(s) | 1238 |
| EclXI | CGGCCG | 1 cut(s) | 278 |
| Eco130I | CCWWGG | 4 cut(s) | 320, 1278, 1810, 2038 |
| Eco24I | GRGCYC | 2 cut(s) | 1240, 2844 |
| Eco31I | GGTCTC | 2 cut(s) | 2310, 2881 |
| Eco32I | GATATC | 2 cut(s) | 1145, 2329 |
| Eco47I | GGWCC | 3 cut(s) | 1355, 1807, 2894 |
| Eco52I | CGGCCG | 1 cut(s) | 278 |
| Eco53kI | GAGCTC | 1 cut(s) | 1238 |
| Eco57I | CTGAAG | 5 cut(s) | 411, 1335, 1416, 2465, 2862 |
| Eco81I | CCTNAGG | 1 cut(s) | 195 |
| EcoICRI | GAGCTC | 1 cut(s) | 1238 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 755, 2901 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1355, 1807, 2600 |
| EcoRII | CCWGG | 6 cut(s) | 484, 556, 655, 1612, 2491, 2890 |
| EcoRV | GATATC | 2 cut(s) | 1145, 2329 |
| EcoT14I | CCWWGG | 4 cut(s) | 320, 1278, 1810, 2038 |
| EcoT22I | ATGCAT | 3 cut(s) | 2005, 2162, 2321 |
| EcoT38I | GRGCYC | 2 cut(s) | 1240, 2844 |
| ErhI | CCWWGG | 4 cut(s) | 320, 1278, 1810, 2038 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 387, 419, 1527, 1559, 1814, 1846, 2031, 2063 |
| FaqI | GGGAC | 1 cut(s) | 2661 |
| FauI | CCCGC | 2 cut(s) | 1372, 2590 |
| FauNDI | CATATG | 1 cut(s) | 1062 |
| FbaI | TGATCA | 2 cut(s) | 871, 2641 |
| FblI | GTMKAC | 2 cut(s) | 1113, 2565 |
| Fnu4HI | GCNGC | 8 cut(s) | 278, 363, 375, 819, 1253, 1455, 1887, 2526 |
| FriOI | GRGCYC | 2 cut(s) | 1240, 2844 |
| Fsp4HI | GCNGC | 8 cut(s) | 278, 363, 375, 819, 1253, 1455, 1887, 2526 |
| FspBI | CTAG | 7 cut(s) | 321, 1386, 1811, 2670, 2721, 2972, 2977 |
| FspI | TGCGCA | 1 cut(s) | 2353 |
| GlaI | GCGC | 3 cut(s) | 1004, 1894, 2353 |
| GluI | GCNGC | 8 cut(s) | 278, 363, 375, 819, 1253, 1455, 1887, 2526 |
| GsaI | CCCAGC | 1 cut(s) | 1886 |
| GsuI | CTGGAG | 2 cut(s) | 1094, 2961 |
| HaeII | RGCGCY | 1 cut(s) | 1896 |
| HaeIII | GGCC | 7 cut(s) | 205, 280, 302, 902, 2602, 2608, 2964 |
| HapII | CCGG | 6 cut(s) | 11, 104, 602, 2098, 2277, 2965 |
| HgaI | GACGC | 3 cut(s) | 380, 389, 665 |
| HhaI | GCGC | 3 cut(s) | 1005, 1895, 2354 |
| Hin6I | GCGC | 3 cut(s) | 1003, 1893, 2352 |
| HinP1I | GCGC | 3 cut(s) | 1003, 1893, 2352 |
| HincII | GTYRAC | 1 cut(s) | 109 |
| HindII | GTYRAC | 1 cut(s) | 109 |
| HindIII | AAGCTT | 3 cut(s) | 401, 434, 1828 |
| HpaII | CCGG | 6 cut(s) | 11, 104, 602, 2098, 2277, 2965 |
| HphI | GGTGA | 5 cut(s) | 182, 617, 851, 1735, 2569 |
| Hpy166II | GTNNAC | 3 cut(s) | 109, 1114, 2566 |
| Hpy8I | GTNNAC | 3 cut(s) | 109, 1114, 2566 |
| Hpy99I | CGWCG | 1 cut(s) | 217 |
| HpyCH4III | ACNGT | 5 cut(s) | 294, 1380, 1998, 2243, 2428 |
| HpyCH4IV | ACGT | 1 cut(s) | 1669 |
| HpyF3I | CTNAG | 9 cut(s) | 195, 539, 891, 938, 1470, 1659, 2055, 2757, 2853 |
| HpySE526I | ACGT | 1 cut(s) | 1669 |
| HspAI | GCGC | 3 cut(s) | 1003, 1893, 2352 |
| KpnI | GGTACC | 1 cut(s) | 885 |
| Ksp22I | TGATCA | 2 cut(s) | 871, 2641 |
| LmnI | GCTCC | 3 cut(s) | 604, 1183, 2878 |
| Lsp1109I | GCAGC | 3 cut(s) | 349, 1441, 1873 |
| MabI | ACCWGGT | 1 cut(s) | 2890 |
| MaeI | CTAG | 7 cut(s) | 321, 1386, 1811, 2670, 2721, 2972, 2977 |
| MaeII | ACGT | 1 cut(s) | 1669 |
| MaeIII | GTNAC | 1 cut(s) | 2927 |
| MfeI | CAATTG | 1 cut(s) | 1241 |
| MflI | RGATCY | 2 cut(s) | 1077, 2440 |
| MhlI | GDGCHC | 4 cut(s) | 1240, 1844, 2802, 2844 |
| MlsI | TGGCCA | 2 cut(s) | 302, 902 |
| MluI | ACGCGT | 1 cut(s) | 674 |
| MluNI | TGGCCA | 2 cut(s) | 302, 902 |
| MlyI | GAGTC | 5 cut(s) | 217, 928, 1183, 1934, 2291 |
| MmeI | TCCRAC | 2 cut(s) | 236, 1021 |
| Mox20I | TGGCCA | 2 cut(s) | 302, 902 |
| Mph1103I | ATGCAT | 3 cut(s) | 2005, 2162, 2321 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1677 |
| MscI | TGGCCA | 2 cut(s) | 302, 902 |
| MslI | CAYNNNNRTG | 3 cut(s) | 864, 1759, 2832 |
| Msp20I | TGGCCA | 2 cut(s) | 302, 902 |
| MspA1I | CMGCKG | 4 cut(s) | 1252, 1867, 1886, 2744 |
| MspI | CCGG | 6 cut(s) | 11, 104, 602, 2098, 2277, 2965 |
| MspR9I | CCNGG | 8 cut(s) | 486, 558, 603, 657, 1614, 2098, 2493, 2892 |
| MunI | CAATTG | 1 cut(s) | 1241 |
| Mva1269I | GAATGC | 2 cut(s) | 2664, 2731 |
| MvaI | CCWGG | 6 cut(s) | 486, 558, 657, 1614, 2493, 2892 |
| MvnI | CGCG | 3 cut(s) | 374, 383, 676 |
| NciI | CCSGG | 2 cut(s) | 603, 2098 |
| NdeI | CATATG | 1 cut(s) | 1062 |
| NlaIV | GGNNCC | 7 cut(s) | 9, 75, 883, 2486, 2497, 2601, 2874 |
| NmeAIII | GCCGAG | 3 cut(s) | 231, 306, 2584 |
| NsbI | TGCGCA | 1 cut(s) | 2353 |
| NsiI | ATGCAT | 3 cut(s) | 2005, 2162, 2321 |
| NspI | RCATGY | 1 cut(s) | 244 |
| PagI | TCATGA | 1 cut(s) | 2782 |
| PaqCI | CACCTGC | 2 cut(s) | 2393, 2407 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1183 |
| PctI | GAATGC | 2 cut(s) | 2664, 2731 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1677 |
| PfeI | GAWTC | 8 cut(s) | 100, 334, 467, 1154, 1307, 1540, 2474, 2968 |
| PflFI | GACNNNGTC | 1 cut(s) | 2892 |
| PfoI | TCCNGGA | 3 cut(s) | 484, 556, 2491 |
| PkrI | GCNGC | 8 cut(s) | 279, 364, 376, 820, 1254, 1456, 1888, 2527 |
| PleI | GAGTC | 5 cut(s) | 216, 928, 1182, 1934, 2290 |
| PpsI | GAGTC | 5 cut(s) | 216, 928, 1182, 1934, 2290 |
| PpuMI | RGGWCCY | 2 cut(s) | 1355, 1807 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1812, 2040 |
| PsiI | TTATAA | 1 cut(s) | 2913 |
| Psp124BI | GAGCTC | 1 cut(s) | 1240 |
| Psp5II | RGGWCCY | 2 cut(s) | 1355, 1807 |
| Psp6I | CCWGG | 6 cut(s) | 484, 556, 655, 1612, 2491, 2890 |
| PspFI | CCCAGC | 1 cut(s) | 1882 |
| PspGI | CCWGG | 6 cut(s) | 484, 556, 655, 1612, 2491, 2890 |
| PspN4I | GGNNCC | 7 cut(s) | 9, 75, 883, 2486, 2497, 2601, 2874 |
| PspPI | GGNCC | 4 cut(s) | 1355, 1807, 2600, 2894 |
| PspPPI | RGGWCCY | 2 cut(s) | 1355, 1807 |
| PstI | CTGCAG | 1 cut(s) | 2404 |
| PsuI | RGATCY | 2 cut(s) | 1077, 2440 |
| PsyI | GACNNNGTC | 1 cut(s) | 2892 |
| PvuII | CAGCTG | 3 cut(s) | 1867, 1886, 2744 |
| RsaI | GTAC | 7 cut(s) | 291, 296, 527, 883, 914, 1483, 2636 |
| RsaNI | GTAC | 7 cut(s) | 290, 295, 526, 882, 913, 1482, 2635 |
| RseI | CAYNNNNRTG | 3 cut(s) | 864, 1759, 2832 |
| SacI | GAGCTC | 1 cut(s) | 1240 |
| SatI | GCNGC | 8 cut(s) | 278, 363, 375, 819, 1253, 1455, 1887, 2526 |
| Sau96I | GGNCC | 4 cut(s) | 1355, 1807, 2600, 2894 |
| SbfI | CCTGCAGG | 1 cut(s) | 2404 |
| ScaI | AGTACT | 2 cut(s) | 527, 1483 |
| SchI | GAGTC | 5 cut(s) | 217, 928, 1183, 1934, 2291 |
| ScrFI | CCNGG | 8 cut(s) | 486, 558, 603, 657, 1614, 2098, 2493, 2892 |
| SdaI | CCTGCAGG | 1 cut(s) | 2404 |
| SduI | GDGCHC | 4 cut(s) | 1240, 1844, 2802, 2844 |
| SexAI | ACCWGGT | 1 cut(s) | 2890 |
| SfcI | CTRYAG | 2 cut(s) | 19, 2400 |
| SinI | GGWCC | 3 cut(s) | 1355, 1807, 2894 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 864, 1759, 2832 |
| SmlI | CTYRAG | 5 cut(s) | 137, 998, 1802, 2688, 2901 |
| SmoI | CTYRAG | 5 cut(s) | 137, 998, 1802, 2688, 2901 |
| SpeI | ACTAGT | 1 cut(s) | 2720 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2404 |
| SspI | AATATT | 4 cut(s) | 947, 970, 1224, 2615 |
| SspMI | CTAG | 7 cut(s) | 321, 1386, 1811, 2670, 2721, 2972, 2977 |
| SstI | GAGCTC | 1 cut(s) | 1240 |
| StyD4I | CCNGG | 8 cut(s) | 484, 556, 601, 655, 1612, 2096, 2491, 2890 |
| StyI | CCWWGG | 4 cut(s) | 320, 1278, 1810, 2038 |
| TaaI | ACNGT | 5 cut(s) | 294, 1380, 1998, 2243, 2428 |
| TaiI | ACGT | 1 cut(s) | 1672 |
| TaqI | TCGA | 7 cut(s) | 98, 347, 1327, 2061, 2206, 2392, 2533 |
| TaqII | GACCGA | 1 cut(s) | 2292 |
| TatI | WGTACW | 4 cut(s) | 294, 525, 1481, 2634 |
| TauI | GCSGC | 5 cut(s) | 280, 377, 821, 1255, 2528 |
| TfiI | GAWTC | 8 cut(s) | 100, 334, 467, 1154, 1307, 1540, 2474, 2968 |
| TscAI | CASTG | 5 cut(s) | 242, 775, 892, 1140, 2248 |
| TseI | GCWGC | 3 cut(s) | 362, 1454, 1886 |
| TspGWI | ACGGA | 2 cut(s) | 1070, 1721 |
| TspRI | CASTG | 5 cut(s) | 242, 775, 892, 1140, 2248 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2892 |
| VpaK11BI | GGWCC | 3 cut(s) | 1355, 1807, 2894 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 755, 2901 |
| XapI | RAATTY | 3 cut(s) | 1124, 1168, 2707 |
| XbaI | TCTAGA | 2 cut(s) | 1385, 2971 |
| XceI | RCATGY | 1 cut(s) | 244 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 892 |
| XmaJI | CCTAGG | 2 cut(s) | 320, 1810 |
| XmiI | GTMKAC | 2 cut(s) | 1113, 2565 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1677 |
| XspI | CTAG | 7 cut(s) | 321, 1386, 1811, 2670, 2721, 2972, 2977 |
| ZrmI | AGTACT | 2 cut(s) | 527, 1483 |
| Zsp2I | ATGCAT | 3 cut(s) | 2005, 2162, 2321 |