RchiOBHm_Chr3g0476231

RIO1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017086
Physical Location & Seq
Reverse (-)
22203375 .. 22203916
542 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44166

Sequence Viewer

Length: 366 bp
ATGGATGTTGGGGCAGATTCTGTAGATAGCTCCCTTGTTCTGGTGAAGCAAGGAGCTGAAGCTAGGGTTTTTGAGTCAACCTTTGTGGGAAGGAGGTCTATTGTCAAGGAACGGTTTTCGAAGAAGTACAGGCATCCTACTTTGGATGCAAAACTTACACTCAGGCGCCTCAATGCGGAGGCGAGGTGCATGAGGAAAGCAAGACGGCTTGGGGTGCATACTCTGGTGCTTTACACTGTGGACATTGTGCTGCATACCCTGACATTTGAATATGTGGAGGGGCCTTCTGTTAAAGATGTGTTTCTTGAGTTTGGGTTAGGAGGTGGTCGTGTGGCTTCAGAAATTGTTGTTATTTATGATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

121

Amino Acids

13.66

Weight (kDa)

9.41

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08120
rosa_chinensis RchiOBHm_Chr3g0476231 RchiOBHm_Chr5g0022281 RchiOBHm_Chr5g0022321
rosa_laevigata RLG00000019416
rosa_multiflora Rmu_sc0025482.1_g000003
rosa_rugosa Rorug05G0073100.1 Rorug05G0073200 Rorug05G0073300
rosa_samantha Rh3BG235400 Rh5AG160000 Rh5CG173800
rosa_wichuraiana Rw5G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 165
AciI CCGC 1 cut(s) 176
AcuI CTGAAG 2 cut(s) 78, 321
AcyI GRCGYC 1 cut(s) 166
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 40, 175
AgsI TTSAA 1 cut(s) 269
AluBI AGCT 3 cut(s) 30, 56, 62
AluI AGCT 3 cut(s) 30, 56, 62
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 250
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 55
AsuII TTCGAA 1 cut(s) 119
BanI GGYRCC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 237
BceAI ACGGC 1 cut(s) 221
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 169
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 2 cut(s) 167, 282
BmsI GCATC 2 cut(s) 136, 142
Bpu14I TTCGAA 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 175
BseGI GGATG 3 cut(s) 10, 133, 151
BseLI CCNNNNNNNGG 2 cut(s) 40, 175
BseMII CTCAG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 237
BshFI GGCC 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 40, 175
BsnI GGCC 1 cut(s) 283
Bsp119I TTCGAA 1 cut(s) 119
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 167, 282
BspT104I TTCGAA 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 165
BssNI GRCGYC 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 114, 238
BstACI GRCGYC 1 cut(s) 166
BstBI TTCGAA 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 3 cut(s) 10, 133, 151
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 237
BsuRI GGCC 1 cut(s) 283
BtsCI GGATG 3 cut(s) 10, 133, 151
BtsIMutI CAGTG 1 cut(s) 234
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 127
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 1 cut(s) 190
CviJI RGCY 6 cut(s) 30, 56, 62, 208, 283, 335
CviKI_1 RGCY 6 cut(s) 30, 56, 62, 208, 283, 335
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 161
DinI GGCGCC 1 cut(s) 167
Eco57I CTGAAG 2 cut(s) 78, 321
EcoO109I RGGNCCY 1 cut(s) 281
EgeI GGCGCC 1 cut(s) 167
EheI GGCGCC 1 cut(s) 167
FaeI CATG 1 cut(s) 193
FaiI YATR 5 cut(s) 191, 219, 255, 273, 357
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 3 cut(s) 17, 120, 158
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 167
GluI GCNGC 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 1 cut(s) 283
HhaI GCGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 2 cut(s) 17, 74
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 2 cut(s) 78, 241
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 2 cut(s) 78, 241
HpyAV CCTTC 2 cut(s) 84, 294
HpyCH4III ACNGT 2 cut(s) 114, 238
HpyCH4V TGCA 4 cut(s) 149, 189, 217, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 1 cut(s) 166
KasI GGCGCC 1 cut(s) 165
LmnI GCTCC 2 cut(s) 35, 53
LpnPI CCDG 5 cut(s) 26, 115, 148, 209, 272
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 2 cut(s) 136, 142
MaeI CTAG 1 cut(s) 63
MboII GAAGA 1 cut(s) 133
MluCI AATT 1 cut(s) 342
Mly113I GGCGCC 1 cut(s) 166
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 7 cut(s) 87, 172, 177, 179, 186, 271, 314
MseI TTAA 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 214
NarI GGCGCC 1 cut(s) 166
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 2 cut(s) 167, 282
NspV TTCGAA 1 cut(s) 119
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 252
PleI GAGTC 1 cut(s) 82
PluTI GGCGCC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 167, 282
PspPI GGNCC 1 cut(s) 281
PstNI CAGNNNCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 1 cut(s) 251
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 1 cut(s) 83
SetI ASST 7 cut(s) 32, 58, 64, 83, 98, 188, 325
SfaNI GCATC 2 cut(s) 136, 142
SfcI CTRYAG 1 cut(s) 21
SfoI GGCGCC 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 1 cut(s) 342
SsiI CCGC 1 cut(s) 176
SspDI GGCGCC 1 cut(s) 165
SspMI CTAG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 114, 238
TaqI TCGA 1 cut(s) 119
TasI AATT 1 cut(s) 342
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 250
TspRI CASTG 1 cut(s) 241
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.