RIO1 family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08120 |
| rosa_chinensis | RchiOBHm_Chr3g0476231 RchiOBHm_Chr5g0022281 RchiOBHm_Chr5g0022321 |
| rosa_laevigata | RLG00000019416 |
| rosa_multiflora | Rmu_sc0025482.1_g000003 |
| rosa_rugosa | Rorug05G0073100.1 Rorug05G0073200 Rorug05G0073300 |
| rosa_samantha | Rh3BG235400 Rh5AG160000 Rh5CG173800 |
| rosa_wichuraiana | Rw5G014300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 270 |
| AclWI | GGATC | 1 cut(s) | 294 |
| AcuI | CTGAAG | 2 cut(s) | 78, 294 |
| AgsI | TTSAA | 2 cut(s) | 155, 211 |
| AluBI | AGCT | 3 cut(s) | 30, 56, 62 |
| AluI | AGCT | 3 cut(s) | 30, 56, 62 |
| AlwI | GGATC | 1 cut(s) | 294 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 20 |
| AoxI | GGCC | 1 cut(s) | 167 |
| ApeKI | GCWGC | 1 cut(s) | 136 |
| AspS9I | GGNCC | 1 cut(s) | 167 |
| BbvCI | CCTCAGC | 1 cut(s) | 63 |
| BbvI | GCAGC | 1 cut(s) | 123 |
| BceAI | ACGGC | 1 cut(s) | 107 |
| BfaI | CTAG | 1 cut(s) | 41 |
| BfmI | CTRYAG | 1 cut(s) | 21 |
| BisI | GCNGC | 2 cut(s) | 137, 270 |
| BlsI | GCNGC | 2 cut(s) | 138, 271 |
| BmgT120I | GGNCC | 1 cut(s) | 167 |
| BmiI | GGNNCC | 1 cut(s) | 168 |
| Bpu10I | CCTNAGC | 1 cut(s) | 63 |
| BpuEI | CTTGAG | 1 cut(s) | 212 |
| BsaWI | WCCGGW | 1 cut(s) | 109 |
| BseGI | GGATG | 3 cut(s) | 10, 210, 284 |
| BseMII | CTCAG | 1 cut(s) | 54 |
| BseXI | GCAGC | 1 cut(s) | 123 |
| BshFI | GGCC | 1 cut(s) | 169 |
| BsiSI | CCGG | 1 cut(s) | 110 |
| BsnI | GGCC | 1 cut(s) | 169 |
| Bsp143I | GATC | 1 cut(s) | 286 |
| BspACI | CCGC | 1 cut(s) | 270 |
| BspANI | GGCC | 1 cut(s) | 169 |
| BspCNI | CTCAG | 1 cut(s) | 55 |
| BspLI | GGNNCC | 1 cut(s) | 168 |
| BspPI | GGATC | 1 cut(s) | 294 |
| BssMI | GATC | 1 cut(s) | 286 |
| Bst4CI | ACNGT | 2 cut(s) | 124, 133 |
| BstDEI | CTNAG | 1 cut(s) | 63 |
| BstF5I | GGATG | 3 cut(s) | 10, 210, 284 |
| BstKTI | GATC | 1 cut(s) | 289 |
| BstMBI | GATC | 1 cut(s) | 286 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 100 |
| BstNSI | RCATGY | 1 cut(s) | 266 |
| BstSFI | CTRYAG | 1 cut(s) | 21 |
| BstV1I | GCAGC | 1 cut(s) | 123 |
| BstX2I | RGATCY | 1 cut(s) | 286 |
| BstYI | RGATCY | 1 cut(s) | 286 |
| BsuRI | GGCC | 1 cut(s) | 169 |
| BtsCI | GGATG | 3 cut(s) | 10, 210, 284 |
| BtsIMutI | CAGTG | 2 cut(s) | 120, 129 |
| CaiI | CAGNNNCTG | 1 cut(s) | 20 |
| Cfr13I | GGNCC | 1 cut(s) | 167 |
| CviAII | CATG | 2 cut(s) | 76, 263 |
| CviJI | RGCY | 5 cut(s) | 30, 56, 62, 94, 169 |
| CviKI_1 | RGCY | 5 cut(s) | 30, 56, 62, 94, 169 |
| DdeI | CTNAG | 1 cut(s) | 63 |
| DpnI | GATC | 1 cut(s) | 288 |
| DpnII | GATC | 1 cut(s) | 286 |
| Eco57I | CTGAAG | 2 cut(s) | 78, 294 |
| EcoO109I | RGGNCCY | 1 cut(s) | 167 |
| FaeI | CATG | 2 cut(s) | 79, 266 |
| FaiI | YATR | 8 cut(s) | 77, 105, 141, 159, 200, 250, 264, 317 |
| FatI | CATG | 2 cut(s) | 75, 262 |
| Fnu4HI | GCNGC | 2 cut(s) | 137, 270 |
| FokI | GGATG | 3 cut(s) | 17, 217, 291 |
| Fsp4HI | GCNGC | 2 cut(s) | 137, 270 |
| FspBI | CTAG | 1 cut(s) | 41 |
| GluI | GCNGC | 2 cut(s) | 137, 270 |
| HaeIII | GGCC | 1 cut(s) | 169 |
| HapII | CCGG | 1 cut(s) | 110 |
| Hin1II | CATG | 2 cut(s) | 79, 266 |
| HinfI | GANTC | 1 cut(s) | 17 |
| HpaII | CCGG | 1 cut(s) | 110 |
| Hpy166II | GTNNAC | 1 cut(s) | 127 |
| Hpy188III | TCNNGA | 1 cut(s) | 191 |
| Hpy8I | GTNNAC | 1 cut(s) | 127 |
| HpyAV | CCTTC | 2 cut(s) | 180, 269 |
| HpyCH4III | ACNGT | 2 cut(s) | 124, 133 |
| HpyCH4V | TGCA | 4 cut(s) | 75, 103, 139, 323 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 100 |
| HpyF3I | CTNAG | 1 cut(s) | 63 |
| Hsp92II | CATG | 2 cut(s) | 79, 266 |
| Kzo9I | GATC | 1 cut(s) | 286 |
| LmnI | GCTCC | 2 cut(s) | 35, 53 |
| LpnPI | CCDG | 2 cut(s) | 123, 158 |
| Lsp1109I | GCAGC | 1 cut(s) | 123 |
| MaeI | CTAG | 1 cut(s) | 41 |
| MaeIII | GTNAC | 1 cut(s) | 335 |
| MalI | GATC | 1 cut(s) | 288 |
| MboI | GATC | 1 cut(s) | 286 |
| MflI | RGATCY | 1 cut(s) | 286 |
| MluCI | AATT | 2 cut(s) | 292, 331 |
| MnlI | CCTC | 3 cut(s) | 58, 63, 157 |
| MseI | TTAA | 1 cut(s) | 177 |
| MspA1I | CMGCKG | 1 cut(s) | 272 |
| MspI | CCGG | 1 cut(s) | 110 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 100 |
| NdeII | GATC | 1 cut(s) | 286 |
| NlaIII | CATG | 2 cut(s) | 79, 266 |
| NlaIV | GGNNCC | 1 cut(s) | 168 |
| NspI | RCATGY | 1 cut(s) | 266 |
| PfeI | GAWTC | 1 cut(s) | 17 |
| PkrI | GCNGC | 2 cut(s) | 138, 271 |
| PspN4I | GGNNCC | 1 cut(s) | 168 |
| PspPI | GGNCC | 1 cut(s) | 167 |
| PstNI | CAGNNNCTG | 1 cut(s) | 20 |
| PsuI | RGATCY | 1 cut(s) | 286 |
| SaqAI | TTAA | 1 cut(s) | 177 |
| SatI | GCNGC | 2 cut(s) | 137, 270 |
| Sau3AI | GATC | 1 cut(s) | 286 |
| Sau96I | GGNCC | 1 cut(s) | 167 |
| SetI | ASST | 4 cut(s) | 32, 58, 64, 74 |
| SfcI | CTRYAG | 1 cut(s) | 21 |
| SmlI | CTYRAG | 1 cut(s) | 191 |
| SmoI | CTYRAG | 1 cut(s) | 191 |
| Sse9I | AATT | 2 cut(s) | 292, 331 |
| SsiI | CCGC | 1 cut(s) | 270 |
| SspMI | CTAG | 1 cut(s) | 41 |
| TaaI | ACNGT | 2 cut(s) | 124, 133 |
| TasI | AATT | 2 cut(s) | 292, 331 |
| TauI | GCSGC | 1 cut(s) | 272 |
| TfiI | GAWTC | 1 cut(s) | 17 |
| Tru1I | TTAA | 1 cut(s) | 177 |
| Tru9I | TTAA | 1 cut(s) | 177 |
| TscAI | CASTG | 2 cut(s) | 127, 136 |
| TseI | GCWGC | 1 cut(s) | 136 |
| TspRI | CASTG | 2 cut(s) | 127, 136 |
| XceI | RCATGY | 1 cut(s) | 266 |
| XspI | CTAG | 1 cut(s) | 41 |