RIO1 family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08120 |
| rosa_chinensis | RchiOBHm_Chr3g0476231 RchiOBHm_Chr5g0022281 RchiOBHm_Chr5g0022321 |
| rosa_laevigata | RLG00000019416 |
| rosa_multiflora | Rmu_sc0025482.1_g000003 |
| rosa_rugosa | Rorug05G0073100.1 Rorug05G0073200 Rorug05G0073300 |
| rosa_samantha | Rh3BG235400 Rh5AG160000 Rh5CG173800 |
| rosa_wichuraiana | Rw5G014300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 144 |
| AcoI | YGGCCR | 1 cut(s) | 307 |
| AcuI | CTGAAG | 1 cut(s) | 303 |
| AcyI | GRCGYC | 1 cut(s) | 145 |
| AfaI | GTAC | 1 cut(s) | 107 |
| AgsI | TTSAA | 1 cut(s) | 251 |
| AluBI | AGCT | 1 cut(s) | 30 |
| AluI | AGCT | 1 cut(s) | 30 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 20 |
| AoxI | GGCC | 2 cut(s) | 263, 307 |
| AspLEI | GCGC | 1 cut(s) | 147 |
| AspS9I | GGNCC | 1 cut(s) | 263 |
| AsuII | TTCGAA | 1 cut(s) | 98 |
| AxyI | CCTNAGG | 1 cut(s) | 156 |
| BanI | GGYRCC | 1 cut(s) | 144 |
| BceAI | ACGGC | 2 cut(s) | 200, 294 |
| BfmI | CTRYAG | 1 cut(s) | 21 |
| BfoI | RGCGCY | 1 cut(s) | 148 |
| BmgT120I | GGNCC | 1 cut(s) | 263 |
| BmiI | GGNNCC | 2 cut(s) | 146, 264 |
| BmsI | GCATC | 2 cut(s) | 115, 121 |
| Bpu14I | TTCGAA | 1 cut(s) | 98 |
| BpuEI | CTTGAG | 1 cut(s) | 308 |
| BsaHI | GRCGYC | 1 cut(s) | 145 |
| Bse21I | CCTNAGG | 1 cut(s) | 156 |
| BseGI | GGATG | 3 cut(s) | 10, 112, 130 |
| BseMII | CTCAG | 3 cut(s) | 32, 147, 154 |
| BshFI | GGCC | 2 cut(s) | 265, 309 |
| BshNI | GGYRCC | 1 cut(s) | 144 |
| BsnI | GGCC | 2 cut(s) | 265, 309 |
| Bsp119I | TTCGAA | 1 cut(s) | 98 |
| BspANI | GGCC | 2 cut(s) | 265, 309 |
| BspCNI | CTCAG | 3 cut(s) | 33, 148, 153 |
| BspLI | GGNNCC | 2 cut(s) | 146, 264 |
| BspT104I | TTCGAA | 1 cut(s) | 98 |
| BspT107I | GGYRCC | 1 cut(s) | 144 |
| BssNI | GRCGYC | 1 cut(s) | 145 |
| Bst4CI | ACNGT | 1 cut(s) | 230 |
| BstACI | GRCGYC | 1 cut(s) | 145 |
| BstBI | TTCGAA | 1 cut(s) | 98 |
| BstDEI | CTNAG | 3 cut(s) | 41, 140, 156 |
| BstF5I | GGATG | 3 cut(s) | 10, 112, 130 |
| BstH2I | RGCGCY | 1 cut(s) | 148 |
| BstHHI | GCGC | 1 cut(s) | 147 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 193 |
| BstSFI | CTRYAG | 1 cut(s) | 21 |
| Bsu36I | CCTNAGG | 1 cut(s) | 156 |
| BsuRI | GGCC | 2 cut(s) | 265, 309 |
| BtsCI | GGATG | 3 cut(s) | 10, 112, 130 |
| BtsIMutI | CAGTG | 1 cut(s) | 226 |
| CaiI | CAGNNNCTG | 1 cut(s) | 20 |
| CfoI | GCGC | 1 cut(s) | 147 |
| Cfr13I | GGNCC | 1 cut(s) | 263 |
| Csp6I | GTAC | 1 cut(s) | 106 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 45, 80 |
| CviAII | CATG | 1 cut(s) | 169 |
| CviJI | RGCY | 5 cut(s) | 30, 187, 265, 309, 317 |
| CviKI_1 | RGCY | 5 cut(s) | 30, 187, 265, 309, 317 |
| CviQI | GTAC | 1 cut(s) | 106 |
| DdeI | CTNAG | 3 cut(s) | 41, 140, 156 |
| DinI | GGCGCC | 1 cut(s) | 146 |
| EaeI | YGGCCR | 1 cut(s) | 307 |
| Eco57I | CTGAAG | 1 cut(s) | 303 |
| Eco81I | CCTNAGG | 1 cut(s) | 156 |
| EcoO109I | RGGNCCY | 1 cut(s) | 263 |
| EgeI | GGCGCC | 1 cut(s) | 146 |
| EheI | GGCGCC | 1 cut(s) | 146 |
| FaeI | CATG | 1 cut(s) | 172 |
| FaiI | YATR | 7 cut(s) | 170, 198, 200, 202, 238, 255, 339 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 44, 76 |
| FatI | CATG | 1 cut(s) | 168 |
| FokI | GGATG | 3 cut(s) | 17, 99, 137 |
| GlaI | GCGC | 1 cut(s) | 146 |
| HaeII | RGCGCY | 1 cut(s) | 148 |
| HaeIII | GGCC | 2 cut(s) | 265, 309 |
| HhaI | GCGC | 1 cut(s) | 147 |
| Hin1I | GRCGYC | 1 cut(s) | 145 |
| Hin1II | CATG | 1 cut(s) | 172 |
| Hin6I | GCGC | 1 cut(s) | 145 |
| HinP1I | GCGC | 1 cut(s) | 145 |
| HincII | GTYRAC | 1 cut(s) | 57 |
| HindII | GTYRAC | 1 cut(s) | 57 |
| HinfI | GANTC | 1 cut(s) | 17 |
| Hpy166II | GTNNAC | 2 cut(s) | 57, 224 |
| Hpy188I | TCNGA | 2 cut(s) | 42, 322 |
| Hpy188III | TCNNGA | 2 cut(s) | 155, 287 |
| Hpy8I | GTNNAC | 2 cut(s) | 57, 224 |
| HpyAV | CCTTC | 2 cut(s) | 63, 276 |
| HpyCH4III | ACNGT | 1 cut(s) | 230 |
| HpyCH4V | TGCA | 4 cut(s) | 128, 168, 196, 236 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 193 |
| HpyF3I | CTNAG | 3 cut(s) | 41, 140, 156 |
| Hsp92I | GRCGYC | 1 cut(s) | 145 |
| Hsp92II | CATG | 1 cut(s) | 172 |
| HspAI | GCGC | 1 cut(s) | 145 |
| KasI | GGCGCC | 1 cut(s) | 144 |
| LmnI | GCTCC | 1 cut(s) | 35 |
| LpnPI | CCDG | 5 cut(s) | 94, 127, 168, 192, 255 |
| LweI | GCATC | 2 cut(s) | 115, 121 |
| MboII | GAAGA | 1 cut(s) | 112 |
| MluCI | AATT | 1 cut(s) | 324 |
| Mly113I | GGCGCC | 1 cut(s) | 145 |
| MnlI | CCTC | 8 cut(s) | 36, 66, 151, 156, 158, 165, 253, 296 |
| MseI | TTAA | 2 cut(s) | 51, 273 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 193 |
| NarI | GGCGCC | 1 cut(s) | 145 |
| NlaIII | CATG | 1 cut(s) | 172 |
| NlaIV | GGNNCC | 2 cut(s) | 146, 264 |
| NspV | TTCGAA | 1 cut(s) | 98 |
| PfeI | GAWTC | 1 cut(s) | 17 |
| PluTI | GGCGCC | 1 cut(s) | 148 |
| PspN4I | GGNNCC | 2 cut(s) | 146, 264 |
| PspPI | GGNCC | 1 cut(s) | 263 |
| PstNI | CAGNNNCTG | 1 cut(s) | 20 |
| RsaI | GTAC | 1 cut(s) | 107 |
| RsaNI | GTAC | 1 cut(s) | 106 |
| SaqAI | TTAA | 2 cut(s) | 51, 273 |
| Sau96I | GGNCC | 1 cut(s) | 263 |
| SetI | ASST | 5 cut(s) | 32, 62, 77, 167, 307 |
| SfaNI | GCATC | 2 cut(s) | 115, 121 |
| SfcI | CTRYAG | 1 cut(s) | 21 |
| SfoI | GGCGCC | 1 cut(s) | 146 |
| SfuI | TTCGAA | 1 cut(s) | 98 |
| SmlI | CTYRAG | 1 cut(s) | 287 |
| SmoI | CTYRAG | 1 cut(s) | 287 |
| Sse9I | AATT | 1 cut(s) | 324 |
| SspDI | GGCGCC | 1 cut(s) | 144 |
| TaaI | ACNGT | 1 cut(s) | 230 |
| TaqI | TCGA | 1 cut(s) | 98 |
| TasI | AATT | 1 cut(s) | 324 |
| TatI | WGTACW | 1 cut(s) | 105 |
| TfiI | GAWTC | 1 cut(s) | 17 |
| Tru1I | TTAA | 2 cut(s) | 51, 273 |
| Tru9I | TTAA | 2 cut(s) | 51, 273 |
| TscAI | CASTG | 1 cut(s) | 233 |
| TspRI | CASTG | 1 cut(s) | 233 |