RIO1 family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08120 |
| rosa_chinensis | RchiOBHm_Chr3g0476231 RchiOBHm_Chr5g0022281 RchiOBHm_Chr5g0022321 |
| rosa_laevigata | RLG00000019416 |
| rosa_multiflora | Rmu_sc0025482.1_g000003 |
| rosa_rugosa | Rorug05G0073100.1 Rorug05G0073200 Rorug05G0073300 |
| rosa_samantha | Rh3BG235400 Rh5AG160000 Rh5CG173800 |
| rosa_wichuraiana | Rw5G014300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 165 |
| AciI | CCGC | 1 cut(s) | 176 |
| AcuI | CTGAAG | 1 cut(s) | 78 |
| AcyI | GRCGYC | 1 cut(s) | 166 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 40, 175 |
| AluBI | AGCT | 3 cut(s) | 30, 56, 62 |
| AluI | AGCT | 3 cut(s) | 30, 56, 62 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 20 |
| AspLEI | GCGC | 1 cut(s) | 168 |
| AsuHPI | GGTGA | 1 cut(s) | 55 |
| AsuII | TTCGAA | 1 cut(s) | 119 |
| BanI | GGYRCC | 1 cut(s) | 165 |
| BceAI | ACGGC | 1 cut(s) | 221 |
| BfaI | CTAG | 1 cut(s) | 63 |
| BfmI | CTRYAG | 1 cut(s) | 21 |
| BfoI | RGCGCY | 1 cut(s) | 169 |
| BmiI | GGNNCC | 1 cut(s) | 167 |
| BmsI | GCATC | 2 cut(s) | 136, 142 |
| Bpu14I | TTCGAA | 1 cut(s) | 119 |
| BsaHI | GRCGYC | 1 cut(s) | 166 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 170, 200 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 40, 175 |
| BseGI | GGATG | 3 cut(s) | 10, 133, 151 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 40, 175 |
| BseMII | CTCAG | 1 cut(s) | 175 |
| BshNI | GGYRCC | 1 cut(s) | 165 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 40, 175 |
| Bsp119I | TTCGAA | 1 cut(s) | 119 |
| BspACI | CCGC | 1 cut(s) | 176 |
| BspCNI | CTCAG | 1 cut(s) | 174 |
| BspLI | GGNNCC | 1 cut(s) | 167 |
| BspT104I | TTCGAA | 1 cut(s) | 119 |
| BspT107I | GGYRCC | 1 cut(s) | 165 |
| BssNI | GRCGYC | 1 cut(s) | 166 |
| Bst4CI | ACNGT | 2 cut(s) | 114, 251 |
| BstACI | GRCGYC | 1 cut(s) | 166 |
| BstBI | TTCGAA | 1 cut(s) | 119 |
| BstDEI | CTNAG | 1 cut(s) | 161 |
| BstF5I | GGATG | 3 cut(s) | 10, 133, 151 |
| BstH2I | RGCGCY | 1 cut(s) | 169 |
| BstHHI | GCGC | 1 cut(s) | 168 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 214 |
| BstSFI | CTRYAG | 1 cut(s) | 21 |
| BtsCI | GGATG | 3 cut(s) | 10, 133, 151 |
| BtsIMutI | CAGTG | 1 cut(s) | 247 |
| CaiI | CAGNNNCTG | 1 cut(s) | 20 |
| CfoI | GCGC | 1 cut(s) | 168 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 66, 101 |
| CviAII | CATG | 1 cut(s) | 190 |
| CviJI | RGCY | 4 cut(s) | 30, 56, 62, 208 |
| CviKI_1 | RGCY | 4 cut(s) | 30, 56, 62, 208 |
| DdeI | CTNAG | 1 cut(s) | 161 |
| DinI | GGCGCC | 1 cut(s) | 167 |
| Eco57I | CTGAAG | 1 cut(s) | 78 |
| EgeI | GGCGCC | 1 cut(s) | 167 |
| EheI | GGCGCC | 1 cut(s) | 167 |
| FaeI | CATG | 1 cut(s) | 193 |
| FaiI | YATR | 6 cut(s) | 129, 191, 219, 221, 223, 259 |
| FatI | CATG | 1 cut(s) | 189 |
| FokI | GGATG | 3 cut(s) | 17, 120, 158 |
| FspBI | CTAG | 1 cut(s) | 63 |
| GlaI | GCGC | 1 cut(s) | 167 |
| HaeII | RGCGCY | 1 cut(s) | 169 |
| HhaI | GCGC | 1 cut(s) | 168 |
| Hin1I | GRCGYC | 1 cut(s) | 166 |
| Hin1II | CATG | 1 cut(s) | 193 |
| Hin6I | GCGC | 1 cut(s) | 166 |
| HinP1I | GCGC | 1 cut(s) | 166 |
| HincII | GTYRAC | 1 cut(s) | 78 |
| HindII | GTYRAC | 1 cut(s) | 78 |
| HinfI | GANTC | 2 cut(s) | 17, 74 |
| HphI | GGTGA | 1 cut(s) | 55 |
| Hpy166II | GTNNAC | 2 cut(s) | 78, 245 |
| Hpy8I | GTNNAC | 2 cut(s) | 78, 245 |
| HpyAV | CCTTC | 1 cut(s) | 84 |
| HpyCH4III | ACNGT | 2 cut(s) | 114, 251 |
| HpyCH4V | TGCA | 4 cut(s) | 149, 189, 217, 257 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 214 |
| HpyF3I | CTNAG | 1 cut(s) | 161 |
| Hsp92I | GRCGYC | 1 cut(s) | 166 |
| Hsp92II | CATG | 1 cut(s) | 193 |
| HspAI | GCGC | 1 cut(s) | 166 |
| KasI | GGCGCC | 1 cut(s) | 165 |
| LmnI | GCTCC | 2 cut(s) | 35, 53 |
| LpnPI | CCDG | 3 cut(s) | 26, 148, 213 |
| LweI | GCATC | 2 cut(s) | 136, 142 |
| MaeI | CTAG | 1 cut(s) | 63 |
| MboII | GAAGA | 1 cut(s) | 133 |
| Mly113I | GGCGCC | 1 cut(s) | 166 |
| MlyI | GAGTC | 1 cut(s) | 83 |
| MnlI | CCTC | 5 cut(s) | 87, 172, 177, 179, 186 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 214 |
| NarI | GGCGCC | 1 cut(s) | 166 |
| NlaIII | CATG | 1 cut(s) | 193 |
| NlaIV | GGNNCC | 1 cut(s) | 167 |
| NspV | TTCGAA | 1 cut(s) | 119 |
| PfeI | GAWTC | 1 cut(s) | 17 |
| PleI | GAGTC | 1 cut(s) | 82 |
| PluTI | GGCGCC | 1 cut(s) | 169 |
| PpsI | GAGTC | 1 cut(s) | 82 |
| PspN4I | GGNNCC | 1 cut(s) | 167 |
| PstNI | CAGNNNCTG | 1 cut(s) | 20 |
| SchI | GAGTC | 1 cut(s) | 83 |
| SetI | ASST | 6 cut(s) | 32, 58, 64, 83, 98, 188 |
| SfaNI | GCATC | 2 cut(s) | 136, 142 |
| SfcI | CTRYAG | 1 cut(s) | 21 |
| SfoI | GGCGCC | 1 cut(s) | 167 |
| SfuI | TTCGAA | 1 cut(s) | 119 |
| SsiI | CCGC | 1 cut(s) | 176 |
| SspDI | GGCGCC | 1 cut(s) | 165 |
| SspMI | CTAG | 1 cut(s) | 63 |
| TaaI | ACNGT | 2 cut(s) | 114, 251 |
| TaqI | TCGA | 1 cut(s) | 119 |
| TfiI | GAWTC | 1 cut(s) | 17 |
| TscAI | CASTG | 1 cut(s) | 254 |
| TspRI | CASTG | 1 cut(s) | 254 |
| XspI | CTAG | 1 cut(s) | 63 |