AT1G08170

Belongs to the histone H2B family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017481
Physical Location & Seq
Reverse (-)
2562769 .. 2563706
938 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08170.1

Sequence Viewer

Length: 732 bp
ATGGCGCCGAGAAAACCAAAGGTTGTTTCCGTGACGAAGAAGAAGAAAGTAGTGGAAGAGACAATCAAAGTAACCGTCACGGAAGAAGGAGATCCGTGTGTGATCACCGAGACAGCGAACGATCAAGAGACGCAAGATCTCACTTTCTCCATTCCCGTCGGAGAAAACGTTACTACCGTTGAGATTCCAGTGGAGGTTCCAGACGAACGGTCACTTCCCGTCGGAGAAAACGTTACCACCGTTAAGATTCCGGTGGATGATCGAGATGAAAGTTCACCTCAGCCGCCGGAGACTCCGGTGGAGGTTCGAGATGAACCTTCACCTCAGCCACCGGAAACTCCCGCTTCCAAGAGTGAAGGCACTTTGAAGAAAACAGATAAGGTTGAGAAGAAGCAGGAGAATAAGAAGAAGAAGAAAAAGAAGAAGAGAGACGATTTGGCGGGAGATGAGTATAGGAGATATGTGTATAAGGTGATGAAGCAAGTGCATCCGGATTTAGGTATAACGTCGAAGGCGATGACGGTGGTGAACATGTTCATGGGAGATATGTTCGAGAGGATAGCGCAGGAGGCAGCGAGGTTAAGCGATTATACAAAGCGGAGGACGTTGTCTTCGAGGGAGATCGAAGCAGCGGTTAGGTTGGTTCTGCCTGGTGAACTTAGCCGCCACGCTGTCGCTGAAGGCTCTAAAGCTGTTAGTAACTTCGTTGGTTATGATAGTAGGAAACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

243

Amino Acids

27.22

Weight (kDa)

8.42

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 131 - 214 1.2e-21 Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF PF00808 155 - 212 2.1e-06 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Histone_ABTB PF26281 168 - 235 2.1e-06 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08170
fragaria_vesca FvH4_3g30460
malus_domestica MD11G1150000.v1.1
prunus_persica Prupe.6G114300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0056411
rosa_laevigata RLG00000035096
rosa_multiflora Rmu_sc0000317.1_g000038
rosa_rugosa Rorug05G0299300
rosa_samantha Rh5AG370200 Rh5BG381400 Rh5BG381600
rosa_wichuraiana Rw5G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccIII TCCGGA 1 cut(s) 490
AciI CCGC 6 cut(s) 284, 342, 440, 598, 632, 664
AclI AACGTT 3 cut(s) 168, 231, 727
AclWI GGATC 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 699
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 531
AgsI TTSAA 1 cut(s) 367
AhdI GACNNNNNGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 649
AjuI GAANNNNNNNTTGG 2 cut(s) 10, 42
AluBI AGCT 1 cut(s) 692
AluI AGCT 1 cut(s) 692
Alw26I GTCTC 5 cut(s) 53, 104, 122, 284, 423
AlwI GGATC 1 cut(s) 86
Aor13HI TCCGGA 1 cut(s) 490
ApeKI GCWGC 2 cut(s) 572, 629
ArsI GACNNNNNNTTYG 4 cut(s) 60, 92, 595, 627
Asp700I GAANNNNTTC 1 cut(s) 533
AspLEI GCGC 2 cut(s) 7, 565
AsuHPI GGTGA 6 cut(s) 97, 267, 312, 484, 538, 665
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 603
BbvCI CCTCAGC 2 cut(s) 279, 324
BbvI GCAGC 2 cut(s) 584, 641
BciT130I CCWGG 1 cut(s) 651
BclI TGATCA 1 cut(s) 102
BcoDI GTCTC 5 cut(s) 53, 104, 122, 284, 423
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 136
BisI GCNGC 4 cut(s) 284, 573, 630, 664
BlsI GCNGC 4 cut(s) 285, 574, 631, 665
Bme1390I CCNGG 1 cut(s) 651
BmeRI GACNNNNNGTC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 6, 198
BmrFI CCNGG 1 cut(s) 651
BmsI GCATC 1 cut(s) 496
BpiI GAAGAC 1 cut(s) 603
Bpu10I CCTNAGC 2 cut(s) 279, 324
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 4 cut(s) 250, 295, 331, 490
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 216, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 188
BseAI TCCGGA 1 cut(s) 490
BseBI CCWGG 1 cut(s) 651
BseGI GGATG 2 cut(s) 262, 487
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 2 cut(s) 293, 338
BseNI ACTGG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 584, 641
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 5 cut(s) 251, 287, 296, 332, 491
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 5 cut(s) 53, 104, 122, 284, 423
BsmBI CGTCTC 2 cut(s) 122, 423
Bsp13I TCCGGA 1 cut(s) 490
Bsp143I GATC 6 cut(s) 91, 102, 121, 136, 259, 621
BspACI CCGC 6 cut(s) 284, 342, 440, 598, 632, 664
BspCNI CTCAG 2 cut(s) 292, 337
BspEI TCCGGA 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 6, 198
BspPI GGATC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 188
BssMI GATC 6 cut(s) 91, 102, 121, 136, 259, 621
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 5 cut(s) 76, 178, 210, 241, 523
Bst6I CTCTTC 2 cut(s) 51, 419
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 3 cut(s) 279, 324, 659
BstF5I GGATG 2 cut(s) 262, 487
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 565
BstKTI GATC 6 cut(s) 94, 105, 124, 139, 262, 624
BstMAI GTCTC 5 cut(s) 53, 104, 122, 284, 423
BstMBI GATC 6 cut(s) 91, 102, 121, 136, 259, 621
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstNI CCWGG 1 cut(s) 651
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 1 cut(s) 649
BstV1I GCAGC 2 cut(s) 584, 641
BstV2I GAAGAC 1 cut(s) 603
BstX2I RGATCY 2 cut(s) 91, 136
BstYI RGATCY 2 cut(s) 91, 136
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 2 cut(s) 262, 487
BtsIMutI CAGTG 1 cut(s) 195
CfoI GCGC 2 cut(s) 7, 565
CseI GACGC 1 cut(s) 139
CviAII CATG 2 cut(s) 532, 538
CviJI RGCY 5 cut(s) 283, 328, 663, 684, 692
CviKI_1 RGCY 5 cut(s) 283, 328, 663, 684, 692
DdeI CTNAG 3 cut(s) 279, 324, 659
DinI GGCGCC 1 cut(s) 6
DpnI GATC 6 cut(s) 93, 104, 123, 138, 261, 623
DpnII GATC 6 cut(s) 91, 102, 121, 136, 259, 621
DriI GACNNNNNGTC 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 51, 419
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 2 cut(s) 51, 419
Eco57I CTGAAG 1 cut(s) 699
EcoRII CCWGG 1 cut(s) 649
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 2 cut(s) 122, 423
FaeI CATG 2 cut(s) 535, 541
FaiI YATR 9 cut(s) 453, 462, 468, 503, 533, 539, 548, 591, 714
FatI CATG 2 cut(s) 531, 537
FauI CCCGC 2 cut(s) 349, 433
FbaI TGATCA 1 cut(s) 102
Fnu4HI GCNGC 4 cut(s) 284, 573, 630, 664
FokI GGATG 2 cut(s) 269, 474
Fsp4HI GCNGC 4 cut(s) 284, 573, 630, 664
GlaI GCGC 2 cut(s) 6, 564
GluI GCNGC 4 cut(s) 284, 573, 630, 664
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 5 cut(s) 251, 287, 296, 332, 491
HgaI GACGC 1 cut(s) 139
HhaI GCGC 2 cut(s) 7, 565
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 535, 541
Hin6I GCGC 2 cut(s) 5, 563
HinP1I GCGC 2 cut(s) 5, 563
HinfI GANTC 3 cut(s) 184, 247, 292
HpaII CCGG 5 cut(s) 251, 287, 296, 332, 491
HphI GGTGA 6 cut(s) 97, 267, 312, 484, 538, 665
Hpy166II GTNNAC 3 cut(s) 275, 529, 656
Hpy188I TCNGA 2 cut(s) 161, 224
Hpy188III TCNNGA 6 cut(s) 125, 200, 263, 308, 491, 553
Hpy8I GTNNAC 3 cut(s) 275, 529, 656
Hpy99I CGWCG 3 cut(s) 161, 224, 511
HpyAV CCTTC 5 cut(s) 80, 327, 350, 505, 674
HpyCH4III ACNGT 5 cut(s) 76, 178, 210, 241, 523
HpyCH4IV ACGT 5 cut(s) 168, 231, 506, 605, 727
HpyCH4V TGCA 1 cut(s) 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 3 cut(s) 279, 324, 659
HpySE526I ACGT 5 cut(s) 168, 231, 506, 605, 727
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 535, 541
HspAI GCGC 2 cut(s) 5, 563
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 490
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 6 cut(s) 91, 102, 121, 136, 259, 621
Lsp1109I GCAGC 2 cut(s) 584, 641
LweI GCATC 1 cut(s) 496
MaeII ACGT 5 cut(s) 168, 231, 506, 605, 727
MaeIII GTNAC 7 cut(s) 31, 70, 76, 169, 210, 232, 698
MalI GATC 6 cut(s) 93, 104, 123, 138, 261, 623
MboI GATC 6 cut(s) 91, 102, 121, 136, 259, 621
MflI RGATCY 2 cut(s) 91, 136
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 2 cut(s) 139, 202
MnlI CCTC 9 cut(s) 187, 288, 295, 333, 549, 562, 570, 594, 609
MroI TCCGGA 1 cut(s) 490
MroXI GAANNNNTTC 1 cut(s) 533
MseI TTAA 2 cut(s) 243, 581
MslI CAYNNNNRTG 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 5 cut(s) 251, 287, 296, 332, 491
MspR9I CCNGG 1 cut(s) 651
MvaI CCWGG 1 cut(s) 651
MwoI GCNNNNNNNGC 1 cut(s) 569
NarI GGCGCC 1 cut(s) 5
NdeII GATC 6 cut(s) 91, 102, 121, 136, 259, 621
NlaIII CATG 2 cut(s) 535, 541
NlaIV GGNNCC 2 cut(s) 6, 198
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 3 cut(s) 31, 76, 210
NspI RCATGY 1 cut(s) 535
PciI ACATGT 1 cut(s) 531
PcsI WCGNNNNNNNCGW 6 cut(s) 165, 174, 228, 237, 512, 611
PdmI GAANNNNTTC 1 cut(s) 533
PfeI GAWTC 2 cut(s) 184, 247
PflFI GACNNNGTC 1 cut(s) 607
PkrI GCNGC 4 cut(s) 285, 574, 631, 665
PleI GAGTC 1 cut(s) 286
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 286
PscI ACATGT 1 cut(s) 531
Psp1406I AACGTT 3 cut(s) 168, 231, 727
Psp6I CCWGG 1 cut(s) 649
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 2 cut(s) 6, 198
PsuI RGATCY 2 cut(s) 91, 136
PsyI GACNNNGTC 1 cut(s) 607
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 2 cut(s) 243, 581
SatI GCNGC 4 cut(s) 284, 573, 630, 664
Sau3AI GATC 6 cut(s) 91, 102, 121, 136, 259, 621
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 651
SfaNI GCATC 1 cut(s) 496
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 536
SsiI CCGC 6 cut(s) 284, 342, 440, 598, 632, 664
SspDI GGCGCC 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 649
TaaI ACNGT 5 cut(s) 76, 178, 210, 241, 523
TaiI ACGT 5 cut(s) 171, 234, 509, 608, 730
TaqI TCGA 6 cut(s) 262, 307, 509, 552, 614, 624
TauI GCSGC 2 cut(s) 286, 666
TfiI GAWTC 2 cut(s) 184, 247
Tru1I TTAA 2 cut(s) 243, 581
Tru9I TTAA 2 cut(s) 243, 581
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 3 cut(s) 31, 76, 210
TseI GCWGC 2 cut(s) 572, 629
Tsp45I GTSAC 3 cut(s) 31, 76, 210
TspDTI ATGAA 4 cut(s) 282, 327, 491, 526
TspGWI ACGGA 3 cut(s) 19, 84, 95
TspRI CASTG 1 cut(s) 195
Tth111I GACNNNGTC 1 cut(s) 607
XceI RCATGY 1 cut(s) 535
XmnI GAANNNNTTC 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.