Prupe.6G114300_v2.0.a1

Belongs to the histone H2B family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017481
Physical Location & Seq
Reverse (-)
8246602 .. 8247519
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G114300.1

Sequence Viewer

Length: 918 bp
ATGGCCCCGAAGCGCTCAACGAAGACGGTGGTGAAGACCACCAAGCAAGTTGTGAGAGAAACAGTTCAAGTCTCATCAGTGGTTCAAAGCAAAAGGCGGAAGAAGCAGAGTGAAGACAGTGGTGATCAAACTCGGAAGCCAGTCAAGACTATCAAGACTATTTCCATTGAAACCCAAGAAGAAAATCAAACCCAAAATGTGGAAATCTCAGAGCCACTCAAGACTAGAAGGATCCCCATTCAAACAGAAGAGGAAAACCAAATCCTAAAGGGCCAAAACGCTGAAGCAATAACCACTCTCACTTCTGATCAGAAAGAGGCAGCAGCAGAAGAAGAAGAAGAAGGAGAAGGAGAAAAGAAAGAAGATCAGGAAGATACAGTGGAAACCAGTATAACTTCTGATGAGAAAGAAGACGAACAGAAAAGTGAAGAGGTCAAGACCCTAGAAGGAGAAAAGGAAGATTCCATGGAAACCAATACAACTTCTGATGAGAGAGAAGAAGAGGAAGAAGAAACAACAAAGAAAGAAGAGCACAAAAGTGATGAGGTGAAGACCCAAAAAGGAGGCAAGAAAAGTAGTGAGAAGAAGAGGAAGAGGAAGAGGAGAGAGAGAGGTAGAGGAGAAGAGTACAAGATATATGTGCATAGGGTTTTGAAGCAGGTGCACCCTGGCATGGGAGTGTCGTCCAAGGGCATGACAGTGCTAAACAATTTGATGAACGACATGTTTGAGAGGCTGGCGGATGAGGCAGCGAGGCTGACCAAGTACACGGCAAGAAAAACCTTGTCGTCTAGGGAGATTCAGGCGGCAGTGAAGCTGGTTTTGCCTGGTGAGCTCGGGAGACATGCCATGGCAGAGGGGACCAAGGCTGTATCAACCTATGTGTCCAATAATAATGGAAGACAGTCCAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

306

Amino Acids

34.6

Weight (kDa)

6.06

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08170
fragaria_vesca FvH4_3g30460
malus_domestica MD11G1150000.v1.1
prunus_persica Prupe.6G114300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0056411
rosa_laevigata RLG00000035096
rosa_multiflora Rmu_sc0000317.1_g000038
rosa_rugosa Rorug05G0299300
rosa_samantha Rh5AG370200 Rh5BG381400 Rh5BG381600
rosa_wichuraiana Rw5G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 649
Acc36I ACCTGC 1 cut(s) 649
AccB7I CCANNNNNTGG 1 cut(s) 199
AciI CCGC 3 cut(s) 97, 740, 806
AclWI GGATC 2 cut(s) 226, 239
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 2 cut(s) 629, 767
AfeI AGCGCT 1 cut(s) 14
AfiI CCNNNNNNNGG 3 cut(s) 199, 673, 674
AflIII ACRYGT 1 cut(s) 723
AgsI TTSAA 5 cut(s) 68, 86, 170, 242, 655
AjnI CCWGG 2 cut(s) 667, 826
AleI CACNNNNGTG 1 cut(s) 537
AluBI AGCT 2 cut(s) 817, 835
AluI AGCT 2 cut(s) 817, 835
Alw21I GWGCWC 3 cut(s) 534, 666, 837
Alw26I GTCTC 2 cut(s) 76, 835
Alw44I GTGCAC 1 cut(s) 662
AlwI GGATC 2 cut(s) 226, 239
Ama87I CYCGRG 1 cut(s) 836
Aor51HI AGCGCT 1 cut(s) 14
AoxI GGCC 2 cut(s) 3, 271
ApaLI GTGCAC 1 cut(s) 662
ApeKI GCWGC 3 cut(s) 320, 323, 749
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 3 cut(s) 4, 271, 861
AsuHPI GGTGA 4 cut(s) 43, 134, 559, 842
AvaI CYCGRG 1 cut(s) 836
AvaII GGWCC 1 cut(s) 861
BaeGI GKGCMC 1 cut(s) 666
BamHI GGATCC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 837
BbsI GAAGAC 6 cut(s) 29, 41, 120, 417, 557, 907
Bbv12I GWGCWC 3 cut(s) 534, 666, 837
BbvI GCAGC 3 cut(s) 332, 335, 761
BceAI ACGGC 1 cut(s) 786
BciT130I CCWGG 2 cut(s) 669, 828
BclI TGATCA 2 cut(s) 124, 307
BcoDI GTCTC 2 cut(s) 76, 835
BfaI CTAG 3 cut(s) 225, 443, 792
BfoI RGCGCY 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 649
BisI GCNGC 4 cut(s) 321, 324, 750, 807
BlsI GCNGC 4 cut(s) 322, 325, 751, 808
Bme1390I CCNGG 2 cut(s) 669, 828
Bme18I GGWCC 1 cut(s) 861
BmeT110I CYCGRG 1 cut(s) 836
BmgT120I GGNCC 3 cut(s) 4, 271, 861
BmiI GGNNCC 3 cut(s) 6, 233, 862
BmrFI CCNGG 2 cut(s) 669, 828
BpiI GAAGAC 6 cut(s) 29, 41, 120, 417, 557, 907
BpuEI CTTGAG 1 cut(s) 203
BsaJI CCNNGG 5 cut(s) 465, 667, 687, 849, 864
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 673, 674
Bse1I ACTGG 2 cut(s) 140, 387
BseBI CCWGG 2 cut(s) 669, 828
BseDI CCNNGG 5 cut(s) 465, 667, 687, 849, 864
BseGI GGATG 1 cut(s) 748
BseLI CCNNNNNNNGG 3 cut(s) 199, 673, 674
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 2 cut(s) 140, 387
BseRI GAGGAG 2 cut(s) 616, 633
BseSI GKGCMC 1 cut(s) 666
BseXI GCAGC 3 cut(s) 332, 335, 761
BshFI GGCC 2 cut(s) 5, 273
BsiHKAI GWGCWC 3 cut(s) 534, 666, 837
BsiHKCI CYCGRG 1 cut(s) 836
BslFI GGGAC 1 cut(s) 874
BslI CCNNNNNNNGG 3 cut(s) 199, 673, 674
BsmAI GTCTC 2 cut(s) 76, 835
BsmFI GGGAC 1 cut(s) 874
BsnI GGCC 2 cut(s) 5, 273
BsoBI CYCGRG 1 cut(s) 836
Bsp1286I GDGCHC 3 cut(s) 534, 666, 837
Bsp143I GATC 4 cut(s) 124, 231, 307, 364
Bsp19I CCATGG 2 cut(s) 465, 849
BspACI CCGC 3 cut(s) 97, 740, 806
BspANI GGCC 2 cut(s) 5, 273
BspCNI CTCAG 1 cut(s) 221
BspLI GGNNCC 3 cut(s) 6, 233, 862
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 2 cut(s) 226, 239
BspQI GCTCTTC 1 cut(s) 522
BsrI ACTGG 2 cut(s) 140, 387
BssECI CCNNGG 5 cut(s) 465, 667, 687, 849, 864
BssMI GATC 4 cut(s) 124, 231, 307, 364
BssT1I CCWWGG 4 cut(s) 465, 687, 849, 864
Bst2UI CCWGG 2 cut(s) 669, 828
Bst4CI ACNGT 6 cut(s) 28, 64, 119, 379, 700, 906
Bst6I CTCTTC 8 cut(s) 243, 423, 495, 522, 581, 587, 593, 618
BstC8I GCNNGC 1 cut(s) 738
BstDEI CTNAG 1 cut(s) 208
BstDSI CCRYGG 2 cut(s) 465, 849
BstF5I GGATG 1 cut(s) 748
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 4 cut(s) 127, 234, 310, 367
BstMAI GTCTC 2 cut(s) 76, 835
BstMBI GATC 4 cut(s) 124, 231, 307, 364
BstMWI GCNNNNNNNGC 4 cut(s) 103, 746, 823, 832
BstNI CCWGG 2 cut(s) 669, 828
BstNSI RCATGY 2 cut(s) 727, 848
BstSCI CCNGG 2 cut(s) 667, 826
BstSLI GKGCMC 1 cut(s) 666
BstV1I GCAGC 3 cut(s) 332, 335, 761
BstV2I GAAGAC 6 cut(s) 29, 41, 120, 417, 557, 907
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 2 cut(s) 5, 273
BtgI CCRYGG 2 cut(s) 465, 849
BtsCI GGATG 1 cut(s) 748
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 5 cut(s) 84, 124, 384, 705, 816
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 1 cut(s) 738
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 3 cut(s) 4, 271, 861
Csp6I GTAC 2 cut(s) 628, 766
CviAII CATG 6 cut(s) 466, 673, 694, 724, 845, 850
CviJI RGCY 9 cut(s) 5, 139, 214, 273, 736, 757, 817, 835, 869
CviKI_1 RGCY 9 cut(s) 5, 139, 214, 273, 736, 757, 817, 835, 869
CviQI GTAC 2 cut(s) 628, 766
DdeI CTNAG 1 cut(s) 208
DpnI GATC 4 cut(s) 126, 233, 309, 366
DpnII GATC 4 cut(s) 124, 231, 307, 364
Eam1104I CTCTTC 8 cut(s) 243, 423, 495, 522, 581, 587, 593, 618
EarI CTCTTC 8 cut(s) 243, 423, 495, 522, 581, 587, 593, 618
EciI GGCGGA 2 cut(s) 112, 755
Ecl136II GAGCTC 1 cut(s) 835
Eco130I CCWWGG 4 cut(s) 465, 687, 849, 864
Eco24I GRGCYC 1 cut(s) 837
Eco47I GGWCC 1 cut(s) 861
Eco47III AGCGCT 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 835
Eco57I CTGAAG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 836
EcoICRI GAGCTC 1 cut(s) 835
EcoRII CCWGG 2 cut(s) 667, 826
EcoT14I CCWWGG 4 cut(s) 465, 687, 849, 864
EcoT38I GRGCYC 1 cut(s) 837
ErhI CCWWGG 4 cut(s) 465, 687, 849, 864
FaeI CATG 6 cut(s) 469, 676, 697, 727, 848, 853
FaqI GGGAC 1 cut(s) 874
FatI CATG 6 cut(s) 465, 672, 693, 723, 844, 849
FbaI TGATCA 2 cut(s) 124, 307
Fnu4HI GCNGC 4 cut(s) 321, 324, 750, 807
FokI GGATG 1 cut(s) 755
FriOI GRGCYC 1 cut(s) 837
Fsp4HI GCNGC 4 cut(s) 321, 324, 750, 807
FspBI CTAG 3 cut(s) 225, 443, 792
GlaI GCGC 1 cut(s) 14
GluI GCNGC 4 cut(s) 321, 324, 750, 807
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 2 cut(s) 5, 273
HhaI GCGC 1 cut(s) 15
Hin1II CATG 6 cut(s) 469, 676, 697, 727, 848, 853
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 2 cut(s) 461, 799
HphI GGTGA 4 cut(s) 43, 134, 559, 842
Hpy166II GTNNAC 2 cut(s) 664, 768
Hpy188I TCNGA 6 cut(s) 135, 211, 307, 312, 400, 487
Hpy188III TCNNGA 6 cut(s) 145, 154, 220, 368, 436, 838
Hpy8I GTNNAC 2 cut(s) 664, 768
HpyAV CCTTC 4 cut(s) 222, 335, 341, 440
HpyCH4III ACNGT 6 cut(s) 28, 64, 119, 379, 700, 906
HpyCH4V TGCA 2 cut(s) 643, 664
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 746, 823, 832
HpyF3I CTNAG 1 cut(s) 208
Hsp92II CATG 6 cut(s) 469, 676, 697, 727, 848, 853
HspAI GCGC 1 cut(s) 13
Ksp22I TGATCA 2 cut(s) 124, 307
Kzo9I GATC 4 cut(s) 124, 231, 307, 364
LguI GCTCTTC 1 cut(s) 522
Lsp1109I GCAGC 3 cut(s) 332, 335, 761
MaeI CTAG 3 cut(s) 225, 443, 792
MalI GATC 4 cut(s) 126, 233, 309, 366
MboI GATC 4 cut(s) 124, 231, 307, 364
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 3 cut(s) 534, 666, 837
MluCI AATT 1 cut(s) 709
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 916
MslI CAYNNNNRTG 3 cut(s) 537, 677, 698
MspR9I CCNGG 2 cut(s) 669, 828
MvaI CCWGG 2 cut(s) 669, 828
MwoI GCNNNNNNNGC 4 cut(s) 103, 746, 823, 832
NcoI CCATGG 2 cut(s) 465, 849
NdeII GATC 4 cut(s) 124, 231, 307, 364
NlaIII CATG 6 cut(s) 469, 676, 697, 727, 848, 853
NlaIV GGNNCC 3 cut(s) 6, 233, 862
NspI RCATGY 2 cut(s) 727, 848
OliI CACNNNNGTG 1 cut(s) 537
PaqCI CACCTGC 1 cut(s) 649
PciI ACATGT 1 cut(s) 723
PciSI GCTCTTC 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 461, 799
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 4 cut(s) 322, 325, 751, 808
PscI ACATGT 1 cut(s) 723
Psp124BI GAGCTC 1 cut(s) 837
Psp6I CCWGG 2 cut(s) 667, 826
PspGI CCWGG 2 cut(s) 667, 826
PspN4I GGNNCC 3 cut(s) 6, 233, 862
PspPI GGNCC 3 cut(s) 4, 271, 861
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 2 cut(s) 629, 767
RsaNI GTAC 2 cut(s) 628, 766
RseI CAYNNNNRTG 3 cut(s) 537, 677, 698
SacI GAGCTC 1 cut(s) 837
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 1 cut(s) 916
SatI GCNGC 4 cut(s) 321, 324, 750, 807
Sau3AI GATC 4 cut(s) 124, 231, 307, 364
Sau96I GGNCC 3 cut(s) 4, 271, 861
ScrFI CCNGG 2 cut(s) 669, 828
SduI GDGCHC 3 cut(s) 534, 666, 837
SetI ASST 8 cut(s) 435, 549, 616, 663, 785, 819, 837, 881
SinI GGWCC 1 cut(s) 861
SmiMI CAYNNNNRTG 3 cut(s) 537, 677, 698
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 709
SsiI CCGC 3 cut(s) 97, 740, 806
SspMI CTAG 3 cut(s) 225, 443, 792
SstI GAGCTC 1 cut(s) 837
StyD4I CCNGG 2 cut(s) 667, 826
StyI CCWWGG 4 cut(s) 465, 687, 849, 864
TaaI ACNGT 6 cut(s) 28, 64, 119, 379, 700, 906
TasI AATT 1 cut(s) 709
TatI WGTACW 2 cut(s) 627, 765
TauI GCSGC 1 cut(s) 809
TfiI GAWTC 2 cut(s) 461, 799
Tru1I TTAA 1 cut(s) 916
Tru9I TTAA 1 cut(s) 916
TscAI CASTG 5 cut(s) 84, 124, 384, 705, 816
TseI GCWGC 3 cut(s) 320, 323, 749
TspDTI ATGAA 1 cut(s) 731
TspRI CASTG 5 cut(s) 84, 124, 384, 705, 816
Van91I CCANNNNNTGG 1 cut(s) 199
VneI GTGCAC 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 861
XceI RCATGY 2 cut(s) 727, 848
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 3 cut(s) 225, 443, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.