Rmu_sc0000317.1_g000038

Belongs to the histone H2B family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000317.1
OG0017481
Physical Location & Seq
Forward (+)
208570 .. 209562
993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000317.1_g000038.1.cds

Sequence Viewer

Length: 993 bp
atggctccgaagcgccgctcatcatccaggttgatgatgaacaccaccaagcaagttgtcaaggaaactgttgaagtctctgtggtccaaagtaagaagaggcagaagaaagtgaatgatgatgaactacaagagtcacccaatagtacaattgacatcgaaaccaaagaagaaaaccagaccgagaaaattgaagtcttggttgaccaaaagccagccaggattgttgccattgaaagccaagaagaaagtgaaaccccaactggtgaacaagacaaagggccagtcaaggttgttgccatagaaaccccacaagaacaagaaggtgcgactccaaatgttgaagagacacagccagaggaaaaaggcacagatccaattgacaaagagccagtcagcaaggatgttgccataatggaaactgaacacgaacaagaagaaagtgaaactcaaaactttgaagaagatagagagcacgccaagactatctccatggatatccacgaagaaagtggaacacaaaattttgaagacaaaaaaccaaaggagacccctatgactcctgagaagaaagaagacaaccaagcatccaagggtgaagaggagaagagtgatgatgtcaagcagataggagaaggaggggagaagaaagaaaagaagagaaagaggagatcaacagggaagaatagagagggaggagaggggtataagaggtatgtgtataaagtgttgaagcaggtgcaccctgaactggggatgtcagcaaaggccatggtggttctcaacaattatatgaatgacatgttcgagaggctagctgatgaggcagcaaagctggccatgtacacggcgcgaaagacgctgtcttcgagggagattcaaggggcagtgaagctggttttgcctggagagcttgggaaacatgccatggcggaagggaccaaggctgtgagcaactacttgtccaagaatgcagcaaggtccaataagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

330

Amino Acids

37.16

Weight (kDa)

5.32

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08170
fragaria_vesca FvH4_3g30460
malus_domestica MD11G1150000.v1.1
prunus_persica Prupe.6G114300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0056411
rosa_laevigata RLG00000035096
rosa_multiflora Rmu_sc0000317.1_g000038
rosa_rugosa Rorug05G0299300
rosa_samantha Rh5AG370200 Rh5BG381400 Rh5BG381600
rosa_wichuraiana Rw5G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
Acc36I ACCTGC 1 cut(s) 727
AccBSI CCGCTC 1 cut(s) 18
AccII CGCG 1 cut(s) 853
AciI CCGC 2 cut(s) 16, 932
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 1 cut(s) 837
AcsI RAATTY 1 cut(s) 523
AfaI GTAC 2 cut(s) 148, 845
AfiI CCNNNNNNNGG 2 cut(s) 751, 752
AflIII ACRYGT 1 cut(s) 801
AgsI TTSAA 8 cut(s) 74, 194, 236, 344, 461, 530, 733, 881
AjnI CCWGG 3 cut(s) 26, 218, 904
AluBI AGCT 4 cut(s) 818, 835, 895, 913
AluI AGCT 4 cut(s) 818, 835, 895, 913
Alw21I GWGCWC 2 cut(s) 477, 744
Alw26I GTCTC 3 cut(s) 82, 341, 542
Alw44I GTGCAC 1 cut(s) 740
AlwI GGATC 1 cut(s) 368
AoxI GGCC 3 cut(s) 281, 768, 837
ApaLI GTGCAC 1 cut(s) 740
ApeKI GCWGC 2 cut(s) 827, 974
ApoI RAATTY 1 cut(s) 523
ArsI GACNNNNNNTTYG 6 cut(s) 270, 302, 378, 410, 850, 882
AspLEI GCGC 2 cut(s) 15, 853
AspS9I GGNCC 4 cut(s) 85, 281, 939, 981
AsuHPI GGTGA 3 cut(s) 129, 278, 608
AsuNHI GCTAGC 1 cut(s) 814
AvaII GGWCC 3 cut(s) 85, 939, 981
BaeGI GKGCMC 1 cut(s) 744
BalI TGGCCA 1 cut(s) 839
BbsI GAAGAC 3 cut(s) 537, 582, 858
Bbv12I GWGCWC 2 cut(s) 477, 744
BbvI GCAGC 2 cut(s) 839, 986
BceAI ACGGC 1 cut(s) 864
BciT130I CCWGG 3 cut(s) 28, 220, 906
BcoDI GTCTC 3 cut(s) 82, 341, 542
BfaI CTAG 1 cut(s) 815
BfoI RGCGCY 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 727
BisI GCNGC 3 cut(s) 16, 828, 975
BlsI GCNGC 3 cut(s) 17, 829, 976
Bme1390I CCNGG 3 cut(s) 28, 220, 906
Bme18I GGWCC 3 cut(s) 85, 939, 981
BmgT120I GGNCC 4 cut(s) 85, 281, 939, 981
BmiI GGNNCC 2 cut(s) 6, 940
BmrFI CCNGG 3 cut(s) 28, 220, 906
BmrI ACTGGG 1 cut(s) 761
BmsI GCATC 1 cut(s) 596
BmtI GCTAGC 1 cut(s) 818
BmuI ACTGGG 1 cut(s) 761
BpiI GAAGAC 3 cut(s) 537, 582, 858
BpmI CTGGAG 1 cut(s) 927
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 5 cut(s) 492, 591, 771, 927, 942
Bsc4I CCNNNNNNNGG 2 cut(s) 751, 752
Bse1I ACTGG 4 cut(s) 268, 284, 392, 756
BseBI CCWGG 3 cut(s) 28, 220, 906
BseDI CCNNGG 5 cut(s) 492, 591, 771, 927, 942
BseGI GGATG 4 cut(s) 23, 409, 587, 762
BseLI CCNNNNNNNGG 2 cut(s) 751, 752
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 4 cut(s) 268, 284, 392, 756
BseRI GAGGAG 3 cut(s) 617, 682, 711
BseSI GKGCMC 1 cut(s) 744
BseXI GCAGC 2 cut(s) 839, 986
Bsh1236I CGCG 1 cut(s) 853
BshFI GGCC 3 cut(s) 283, 770, 839
BsiHKAI GWGCWC 2 cut(s) 477, 744
BslFI GGGAC 1 cut(s) 952
BslI CCNNNNNNNGG 2 cut(s) 751, 752
BsmAI GTCTC 3 cut(s) 82, 341, 542
BsmFI GGGAC 1 cut(s) 952
BsmI GAATGC 1 cut(s) 976
BsnI GGCC 3 cut(s) 283, 770, 839
Bso31I GGTCTC 1 cut(s) 542
Bsp1286I GDGCHC 2 cut(s) 477, 744
Bsp1407I TGTACA 1 cut(s) 843
Bsp143I GATC 2 cut(s) 373, 671
Bsp19I CCATGG 3 cut(s) 492, 771, 927
BspACI CCGC 2 cut(s) 16, 932
BspANI GGCC 3 cut(s) 283, 770, 839
BspCNI CTCAG 1 cut(s) 556
BspFNI CGCG 1 cut(s) 853
BspLI GGNNCC 2 cut(s) 6, 940
BspMI ACCTGC 1 cut(s) 727
BspOI GCTAGC 1 cut(s) 818
BspPI GGATC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 542
BsrBI CCGCTC 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 843
BsrI ACTGG 4 cut(s) 268, 284, 392, 756
BssECI CCNNGG 5 cut(s) 492, 591, 771, 927, 942
BssMI GATC 2 cut(s) 373, 671
BssT1I CCWWGG 5 cut(s) 492, 591, 771, 927, 942
Bst2UI CCWGG 3 cut(s) 28, 220, 906
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 5 cut(s) 92, 339, 594, 602, 653
BstAUI TGTACA 1 cut(s) 843
BstC8I GCNNGC 4 cut(s) 216, 477, 816, 837
BstDEI CTNAG 1 cut(s) 564
BstDSI CCRYGG 3 cut(s) 492, 771, 927
BstF5I GGATG 4 cut(s) 23, 409, 587, 762
BstFNI CGCG 1 cut(s) 853
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 2 cut(s) 15, 853
BstKTI GATC 2 cut(s) 376, 674
BstMAI GTCTC 3 cut(s) 82, 341, 542
BstMBI GATC 2 cut(s) 373, 671
BstMWI GCNNNNNNNGC 5 cut(s) 824, 836, 859, 901, 910
BstNI CCWGG 3 cut(s) 28, 220, 906
BstNSI RCATGY 2 cut(s) 805, 926
BstSCI CCNGG 3 cut(s) 26, 218, 904
BstSLI GKGCMC 1 cut(s) 744
BstUI CGCG 1 cut(s) 853
BstV1I GCAGC 2 cut(s) 839, 986
BstV2I GAAGAC 3 cut(s) 537, 582, 858
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 3 cut(s) 283, 770, 839
BtgI CCRYGG 3 cut(s) 492, 771, 927
BtsCI GGATG 4 cut(s) 23, 409, 587, 762
BtsI GCAGTG 1 cut(s) 894
BtsIMutI CAGTG 1 cut(s) 894
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 4 cut(s) 216, 477, 816, 837
CfoI GCGC 2 cut(s) 15, 853
Cfr13I GGNCC 4 cut(s) 85, 281, 939, 981
CseI GACGC 1 cut(s) 868
Csp6I GTAC 2 cut(s) 147, 844
CviAII CATG 6 cut(s) 493, 772, 802, 841, 923, 928
CviQI GTAC 2 cut(s) 147, 844
DdeI CTNAG 1 cut(s) 564
DpnI GATC 2 cut(s) 375, 673
DpnII GATC 2 cut(s) 373, 671
EaeI YGGCCR 1 cut(s) 837
Eam1104I CTCTTC 5 cut(s) 92, 339, 594, 602, 653
EarI CTCTTC 5 cut(s) 92, 339, 594, 602, 653
EciI GGCGGA 1 cut(s) 947
Eco130I CCWWGG 5 cut(s) 492, 591, 771, 927, 942
Eco31I GGTCTC 1 cut(s) 542
Eco32I GATATC 1 cut(s) 499
Eco47I GGWCC 3 cut(s) 85, 939, 981
EcoRII CCWGG 3 cut(s) 26, 218, 904
EcoRV GATATC 1 cut(s) 499
EcoT14I CCWWGG 5 cut(s) 492, 591, 771, 927, 942
ErhI CCWWGG 5 cut(s) 492, 591, 771, 927, 942
FaeI CATG 6 cut(s) 496, 775, 805, 844, 926, 931
FaqI GGGAC 1 cut(s) 952
FatI CATG 6 cut(s) 492, 771, 801, 840, 922, 927
Fnu4HI GCNGC 3 cut(s) 16, 828, 975
FokI GGATG 4 cut(s) 10, 416, 574, 769
Fsp4HI GCNGC 3 cut(s) 16, 828, 975
FspBI CTAG 1 cut(s) 815
GlaI GCGC 2 cut(s) 14, 852
GluI GCNGC 3 cut(s) 16, 828, 975
GsuI CTGGAG 1 cut(s) 927
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 3 cut(s) 283, 770, 839
HgaI GACGC 1 cut(s) 868
HhaI GCGC 2 cut(s) 15, 853
Hin1II CATG 6 cut(s) 496, 775, 805, 844, 926, 931
Hin6I GCGC 2 cut(s) 13, 851
HinP1I GCGC 2 cut(s) 13, 851
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 4 cut(s) 134, 331, 559, 877
HphI GGTGA 3 cut(s) 129, 278, 608
Hpy166II GTNNAC 4 cut(s) 205, 269, 742, 846
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 563, 808
Hpy8I GTNNAC 4 cut(s) 205, 269, 742, 846
HpyAV CCTTC 3 cut(s) 317, 629, 929
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 742, 974
HpyF10VI GCNNNNNNNGC 5 cut(s) 824, 836, 859, 901, 910
HpyF3I CTNAG 1 cut(s) 564
Hsp92II CATG 6 cut(s) 496, 775, 805, 844, 926, 931
HspAI GCGC 2 cut(s) 13, 851
Kzo9I GATC 2 cut(s) 373, 671
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 2 cut(s) 839, 986
LweI GCATC 1 cut(s) 596
MaeI CTAG 1 cut(s) 815
MaeIII GTNAC 1 cut(s) 135
MalI GATC 2 cut(s) 375, 673
MbiI CCGCTC 1 cut(s) 18
MboI GATC 2 cut(s) 373, 671
MfeI CAATTG 2 cut(s) 150, 378
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 2 cut(s) 477, 744
MlsI TGGCCA 1 cut(s) 839
MluCI AATT 5 cut(s) 150, 189, 378, 523, 787
MluNI TGGCCA 1 cut(s) 839
MlyI GAGTC 3 cut(s) 143, 325, 553
Mox20I TGGCCA 1 cut(s) 839
MscI TGGCCA 1 cut(s) 839
Msp20I TGGCCA 1 cut(s) 839
MspR9I CCNGG 3 cut(s) 28, 220, 906
MunI CAATTG 2 cut(s) 150, 378
Mva1269I GAATGC 1 cut(s) 976
MvaI CCWGG 3 cut(s) 28, 220, 906
MvnI CGCG 1 cut(s) 853
MwoI GCNNNNNNNGC 5 cut(s) 824, 836, 859, 901, 910
NcoI CCATGG 3 cut(s) 492, 771, 927
NdeII GATC 2 cut(s) 373, 671
NheI GCTAGC 1 cut(s) 814
NlaIII CATG 6 cut(s) 496, 775, 805, 844, 926, 931
NlaIV GGNNCC 2 cut(s) 6, 940
NmuCI GTSAC 1 cut(s) 135
NspI RCATGY 2 cut(s) 805, 926
PaqCI CACCTGC 1 cut(s) 727
PciI ACATGT 1 cut(s) 801
PcsI WCGNNNNNNNCGW 1 cut(s) 866
PctI GAATGC 1 cut(s) 976
PfeI GAWTC 1 cut(s) 877
PflFI GACNNNGTC 1 cut(s) 862
PkrI GCNGC 3 cut(s) 17, 829, 976
PleI GAGTC 3 cut(s) 142, 325, 553
PpsI GAGTC 3 cut(s) 142, 325, 553
PscI ACATGT 1 cut(s) 801
Psp6I CCWGG 3 cut(s) 26, 218, 904
PspGI CCWGG 3 cut(s) 26, 218, 904
PspN4I GGNNCC 2 cut(s) 6, 940
PspPI GGNCC 4 cut(s) 85, 281, 939, 981
PsuI RGATCY 1 cut(s) 373
PsyI GACNNNGTC 1 cut(s) 862
RsaI GTAC 2 cut(s) 148, 845
RsaNI GTAC 2 cut(s) 147, 844
SatI GCNGC 3 cut(s) 16, 828, 975
Sau3AI GATC 2 cut(s) 373, 671
Sau96I GGNCC 4 cut(s) 85, 281, 939, 981
SchI GAGTC 3 cut(s) 143, 325, 553
ScrFI CCNGG 3 cut(s) 28, 220, 906
SduI GDGCHC 2 cut(s) 477, 744
SfaNI GCATC 1 cut(s) 596
SinI GGWCC 3 cut(s) 85, 939, 981
Sse9I AATT 5 cut(s) 150, 189, 378, 523, 787
SsiI CCGC 2 cut(s) 16, 932
SspMI CTAG 1 cut(s) 815
StyD4I CCNGG 3 cut(s) 26, 218, 904
StyI CCWWGG 5 cut(s) 492, 591, 771, 927, 942
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 3 cut(s) 159, 807, 869
TaqII GACCGA 1 cut(s) 197
TasI AATT 5 cut(s) 150, 189, 378, 523, 787
TatI WGTACW 2 cut(s) 146, 843
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 877
TscAI CASTG 1 cut(s) 894
TseFI GTSAC 1 cut(s) 135
TseI GCWGC 2 cut(s) 827, 974
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 3 cut(s) 53, 138, 809
TspRI CASTG 1 cut(s) 894
Tth111I GACNNNGTC 1 cut(s) 862
VneI GTGCAC 1 cut(s) 740
VpaK11BI GGWCC 3 cut(s) 85, 939, 981
XapI RAATTY 1 cut(s) 523
XceI RCATGY 2 cut(s) 805, 926
XcmI CCANNNNNNNNNTGG 1 cut(s) 509
XspI CTAG 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.