RchiOBHm_Chr5g0056411

Belongs to the histone H2B family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017481
Physical Location & Seq
Forward (+)
60068761 .. 60069255
495 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33331

Sequence Viewer

Length: 495 bp
ATGGATATCCACGAAGATAGTGGAACACAAAATTTTGAAGACAAAAAACCAAAGGTTATGACTCCTGAGAAGAAAGACGACAACCAAGCATCCAAGGGTGAAGAGGAGAAGAGTGATGATGTCAAGCAGATCGGAGAAGGAGGGGAGAAGAAAGAAAAGAAGAGAAAGAGGAGATCAACAGGGAAGAATAGAGAGGGAGGAGAGGGGTATAAGAGGTATGTGTATAAAGTGTTGAAGCAGGTGCACCCTGAACTGGGGATGTCAGCAAAGGCCATGGTGGTTCTCAACAATTATATGAATGACATGTTCGACAGGCTAGCTGATGAGGCAGCAAAGCTGGCCATGTACACGGCGCGAAAGACGCTGTCTTCGAGGGAGATTCAAGGGGCAGTGAAGCTGGTTTTGCCTGGAGAGCTTGGGAAACATGCCATGGCGGAAGGGACCAAGGCTGTGAGCAACTACTTGTCCAAGAATGCAGCAAGGTCCAATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

164

Amino Acids

18.37

Weight (kDa)

9.46

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 51 - 133 1.4e-18 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 74 - 155 2e-06 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08170
fragaria_vesca FvH4_3g30460
malus_domestica MD11G1150000.v1.1
prunus_persica Prupe.6G114300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0056411
rosa_laevigata RLG00000035096
rosa_multiflora Rmu_sc0000317.1_g000038
rosa_rugosa Rorug05G0299300
rosa_samantha Rh5AG370200 Rh5BG381400 Rh5BG381600
rosa_wichuraiana Rw5G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 229
Acc36I ACCTGC 1 cut(s) 229
AccII CGCG 1 cut(s) 355
AciI CCGC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 1 cut(s) 31
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 253, 254
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 3 cut(s) 38, 235, 383
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 4 cut(s) 320, 337, 397, 415
AluI AGCT 4 cut(s) 320, 337, 397, 415
Alw21I GWGCWC 1 cut(s) 246
Alw44I GTGCAC 1 cut(s) 242
AoxI GGCC 2 cut(s) 270, 339
ApaLI GTGCAC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 329, 476
ApoI RAATTY 1 cut(s) 31
ArsI GACNNNNNNTTYG 2 cut(s) 352, 384
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 2 cut(s) 441, 483
AsuHPI GGTGA 1 cut(s) 110
AsuNHI GCTAGC 1 cut(s) 316
AvaII GGWCC 2 cut(s) 441, 483
BaeGI GKGCMC 1 cut(s) 246
BalI TGGCCA 1 cut(s) 341
BbsI GAAGAC 2 cut(s) 45, 360
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 341, 488
BceAI ACGGC 1 cut(s) 366
BciT130I CCWGG 1 cut(s) 408
BfaI CTAG 1 cut(s) 317
BfuAI ACCTGC 1 cut(s) 229
BisI GCNGC 2 cut(s) 330, 477
BlsI GCNGC 2 cut(s) 331, 478
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 2 cut(s) 441, 483
BmgT120I GGNCC 2 cut(s) 441, 483
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 1 cut(s) 408
BmrI ACTGGG 1 cut(s) 263
BmsI GCATC 1 cut(s) 98
BmtI GCTAGC 1 cut(s) 320
BmuI ACTGGG 1 cut(s) 263
BpiI GAAGAC 2 cut(s) 45, 360
BpmI CTGGAG 1 cut(s) 429
BsaJI CCNNGG 4 cut(s) 93, 273, 429, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 254
Bse1I ACTGG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 4 cut(s) 93, 273, 429, 444
BseGI GGATG 2 cut(s) 89, 264
BseLI CCNNNNNNNGG 2 cut(s) 253, 254
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 258
BseRI GAGGAG 3 cut(s) 119, 184, 213
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 2 cut(s) 341, 488
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 2 cut(s) 272, 341
BsiHKAI GWGCWC 1 cut(s) 246
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 2 cut(s) 253, 254
BsmFI GGGAC 1 cut(s) 454
BsmI GAATGC 1 cut(s) 478
BsnI GGCC 2 cut(s) 272, 341
Bsp1286I GDGCHC 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 2 cut(s) 129, 173
Bsp19I CCATGG 2 cut(s) 273, 429
BspACI CCGC 1 cut(s) 434
BspANI GGCC 2 cut(s) 272, 341
BspCNI CTCAG 1 cut(s) 58
BspFNI CGCG 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 442
BspMI ACCTGC 1 cut(s) 229
BspOI GCTAGC 1 cut(s) 320
BsrGI TGTACA 1 cut(s) 345
BsrI ACTGG 1 cut(s) 258
BssECI CCNNGG 4 cut(s) 93, 273, 429, 444
BssMI GATC 2 cut(s) 129, 173
BssT1I CCWWGG 4 cut(s) 93, 273, 429, 444
Bst2UI CCWGG 1 cut(s) 408
Bst6I CTCTTC 3 cut(s) 96, 104, 155
BstAUI TGTACA 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 318, 339
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 2 cut(s) 273, 429
BstF5I GGATG 2 cut(s) 89, 264
BstFNI CGCG 1 cut(s) 355
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 2 cut(s) 132, 176
BstMBI GATC 2 cut(s) 129, 173
BstMWI GCNNNNNNNGC 5 cut(s) 326, 338, 361, 403, 412
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 2 cut(s) 307, 428
BstSCI CCNGG 1 cut(s) 406
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 2 cut(s) 341, 488
BstV2I GAAGAC 2 cut(s) 45, 360
BsuRI GGCC 2 cut(s) 272, 341
BtgI CCRYGG 2 cut(s) 273, 429
BtsCI GGATG 2 cut(s) 89, 264
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 396
BveI ACCTGC 1 cut(s) 229
Cac8I GCNNGC 2 cut(s) 318, 339
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 441, 483
CseI GACGC 1 cut(s) 370
Csp6I GTAC 1 cut(s) 346
CviAII CATG 5 cut(s) 274, 304, 343, 425, 430
CviJI RGCY 8 cut(s) 272, 316, 320, 337, 341, 397, 415, 449
CviKI_1 RGCY 8 cut(s) 272, 316, 320, 337, 341, 397, 415, 449
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 1 cut(s) 66
DpnI GATC 2 cut(s) 131, 175
DpnII GATC 2 cut(s) 129, 173
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 3 cut(s) 96, 104, 155
EarI CTCTTC 3 cut(s) 96, 104, 155
EciI GGCGGA 1 cut(s) 449
Eco130I CCWWGG 4 cut(s) 93, 273, 429, 444
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 2 cut(s) 441, 483
EcoRII CCWGG 1 cut(s) 406
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 4 cut(s) 93, 273, 429, 444
ErhI CCWWGG 4 cut(s) 93, 273, 429, 444
FaeI CATG 5 cut(s) 277, 307, 346, 428, 433
FaqI GGGAC 1 cut(s) 454
FatI CATG 5 cut(s) 273, 303, 342, 424, 429
Fnu4HI GCNGC 2 cut(s) 330, 477
FokI GGATG 2 cut(s) 76, 271
Fsp4HI GCNGC 2 cut(s) 330, 477
FspBI CTAG 1 cut(s) 317
GlaI GCGC 1 cut(s) 354
GluI GCNGC 2 cut(s) 330, 477
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 2 cut(s) 272, 341
HgaI GACGC 1 cut(s) 370
HhaI GCGC 1 cut(s) 355
Hin1II CATG 5 cut(s) 277, 307, 346, 428, 433
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HinfI GANTC 2 cut(s) 61, 379
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 244, 348
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 2 cut(s) 244, 348
HpyAV CCTTC 2 cut(s) 131, 431
HpyCH4V TGCA 2 cut(s) 244, 476
HpyF10VI GCNNNNNNNGC 5 cut(s) 326, 338, 361, 403, 412
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 5 cut(s) 277, 307, 346, 428, 433
HspAI GCGC 1 cut(s) 353
Kzo9I GATC 2 cut(s) 129, 173
Lsp1109I GCAGC 2 cut(s) 341, 488
LweI GCATC 1 cut(s) 98
MaeI CTAG 1 cut(s) 317
MalI GATC 2 cut(s) 131, 175
MboI GATC 2 cut(s) 129, 173
MboII GAAGA 9 cut(s) 26, 50, 82, 113, 121, 160, 172, 196, 360
MhlI GDGCHC 1 cut(s) 246
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 2 cut(s) 31, 289
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 9 cut(s) 97, 134, 162, 187, 191, 196, 207, 319, 366
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
Msp20I TGGCCA 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 478
MvaI CCWGG 1 cut(s) 408
MvnI CGCG 1 cut(s) 355
MwoI GCNNNNNNNGC 5 cut(s) 326, 338, 361, 403, 412
NcoI CCATGG 2 cut(s) 273, 429
NdeII GATC 2 cut(s) 129, 173
NheI GCTAGC 1 cut(s) 316
NlaIII CATG 5 cut(s) 277, 307, 346, 428, 433
NlaIV GGNNCC 1 cut(s) 442
NspI RCATGY 2 cut(s) 307, 428
PaqCI CACCTGC 1 cut(s) 229
PciI ACATGT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PctI GAATGC 1 cut(s) 478
PfeI GAWTC 1 cut(s) 379
PflFI GACNNNGTC 1 cut(s) 364
PkrI GCNGC 2 cut(s) 331, 478
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PscI ACATGT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 442
PspPI GGNCC 2 cut(s) 441, 483
PsyI GACNNNGTC 1 cut(s) 364
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SatI GCNGC 2 cut(s) 330, 477
Sau3AI GATC 2 cut(s) 129, 173
Sau96I GGNCC 2 cut(s) 441, 483
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 246
SetI ASST 8 cut(s) 57, 218, 243, 322, 339, 399, 417, 485
SfaNI GCATC 1 cut(s) 98
SinI GGWCC 2 cut(s) 441, 483
Sse9I AATT 2 cut(s) 31, 289
SsiI CCGC 1 cut(s) 434
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 406
StyI CCWWGG 4 cut(s) 93, 273, 429, 444
TaqI TCGA 2 cut(s) 309, 371
TasI AATT 2 cut(s) 31, 289
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 1 cut(s) 379
TscAI CASTG 1 cut(s) 396
TseI GCWGC 2 cut(s) 329, 476
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 396
Tth111I GACNNNGTC 1 cut(s) 364
VneI GTGCAC 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 441, 483
XapI RAATTY 1 cut(s) 31
XceI RCATGY 2 cut(s) 307, 428
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.