Rorug05G0299300

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003793
Physical Location & Seq
Forward (+)
34636604 .. 34647991
11388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0299300.1

Sequence Viewer

Length: 2157 bp
ATGTATAGGATGGGTAAAATCAGAGACAACGATGGGTACGAAGAAGAGCTCGTTGACTACGATGAGGAAGAACAGAACGCCCCCACCTCCGTCTCCGCCAAGCCCAATGGCGAATCCGCCAAAAAGATGACCTTGATAGACGTTGTGGACTTATCTAGTGATGATGAACTTGGAGAGGTGGATGTGAAACCTGTTAAGCTGGAGCTAGATGTTGTTAGAAGACACGAAGAGAAGTGTAAAGCTCAGCCTGTGAAGAATAAATTGTCAAAAACCCAACGTACTATACAAGATTCTGAAGAAAATAGGAGCTCAAATGCTTTAAGTACTGGTCACAGTAGTTCCAGTATATTAGACCAAGGGCAGTCTCCTGTTGATGACACAGGCATCTCTTCAGCATCGCCTATATGTCCAGCACCACTTTGTCGGCAATTTTGGAAAGCTGGGAACTACAATGATGGCATCGGTTCTAAAGCCACTTTTCAAAATGGCAAAAACTATCTACATGTCCACCCCATGTTTCTTCACTCGAATGCCACCTCACATAAATGGGCCTTTGGTGCCATAGCAGAACTCCTTGACAATGCAGTTGATGAGATCCAAAATGGGGCCACTTTTGTCAATGTAGATAAAATCTCAAATCCAAAGGATGGAAGCCCAGCATTGTTAATTCAAGATGATGGTAATGGCATGGAACCTGAAGCTATGCGCCGCTGTATGAGTTTTGGGTTTTCAGATAAGAAGTCGAAATCAGCCATTGGCCAATATGGTAATGGCTTCAAGACCAGTACTATGAGACTTGGTGCGGATGTTATTGTATTCAGCCGCCACCAGGATAAGAGGACATTGACTCAAAGCATTGGTCTTCTCTCTTACACATTTTTGGCACAAACAGGACATGATAGAATAGTAGTACCGATGGTGGATTACGAATTCAACCCTACAACTGAGACATTAGATATAATGCACGGCAGAGAACATTTTATGTCTAATCTCTCCTTGTTGCTACAGTGGTCTCCATTTTCAACAGAGGCTGAGCTACTGAAACAATTTAATGACATTGGAGCTCATGGGACAAAAGTTATGATTTATAACTTATGGTTCAACGATGATGGGAGTGCAGAGCTGGACTTCGATACTGATGCCGAGGATATTCGTATTAGTGGGGATACCAAAAAAGTTAATGCTAGACTTGGATGGAAAGAAGTCAATGAACAGCACATTGCTAATCGTTTCCATCACTCTCTCCGTGTTTACTTGTCTATCTTGTACTTGCGTATACCAGCAACCTTTCAAATAATACTGCGTGGGAGAGTTGTTGAGCATCATAACATTGCTGATGACCTAAAATTTCAAGAATATATCTTGTATAGACCTCAAACTGGGGGTACTGTGGAGGGTCAAGTTATTACGACTATTGGATTTCTAAACGATGCTCCATATGTCAGTTACCACGGCTTCAATGTTTATCACAAGAATCGTCTGATACTGCCGTATTGGCAGGTTGTGAGCTATTTAGACAGCAGGGGTCGTGGAGTTGTTGGTGTTTTGGAAGCAGATTTTGTTGAGCCGAGTCATAACAAACAAGATTTTGAGAGAACTTCTCTTTTTCAGAAACTTGAAGTCCGTTTGAAGGAGATGACGTGGGAATACTGGGATTATCACTGTGGACTAATTGGGTATCAGGTAAAGAAAAAGCTTAAACCAGTGACCTCACAAAGTGGCGTTCATCAATCTATCACATTGGGCCAAAGTTCCCCTGCTCTTGGTAGTAAAAACACAGTACTTGGAAAATCTGGGCCATCAATTTCAAGCACCTTAAGGAAATCTGTACAAGGAACGATGAAGAGGAAAGAACATGATGATATTCTGCCGGTTGAAAATGTGAAACGGGCCAAGGTGATCAATACTGGGAAAAGTCAGTCTGTACAGCTGGGGAATCCTACTGGAAATCAGCTGAAAGATCAAGAGGCTAAAAATTTGATGCTAGAGAACAACAAGCTGCGATCTAAATGCTTGGAATATGAGAAGAGGGAGGGGGAACTAAATCTTAAGGTGGCACAGCTTAAGAAGGAAATGAAAGACGTTGATGATGAATACTCTCTAATGTTGGCTGAATTAGAAGCGTTGGGGGATGTCAAGGAAGAAAAGGGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

718

Amino Acids

80.73

Weight (kDa)

6.03

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 185 - 284 3.4e-17 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c PF02518 187 - 265 4.7e-06 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5 PF17942 413 - 551 3.3e-60 Morc6 ribosomal protein S5 domain 2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1089
Acc36I ACCTGC 1 cut(s) 1489
AccB1I GGYRCC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 647
AccI GTMKAC 1 cut(s) 1276
AciI CCGC 5 cut(s) 96, 117, 709, 803, 823
AclWI GGATC 1 cut(s) 589
AcoI YGGCCR 1 cut(s) 757
AcsI RAATTY 3 cut(s) 929, 1346, 1975
AcuI CTGAAG 3 cut(s) 315, 375, 717
AdeI CACNNNGTG 1 cut(s) 1718
AfiI CCNNNNNNNGG 6 cut(s) 604, 647, 829, 1379, 1630, 1763
AflII CTTAAG 3 cut(s) 1816, 2048, 2063
AflIII ACRYGT 1 cut(s) 502
AjiI CACGTC 1 cut(s) 1641
AjnI CCWGG 1 cut(s) 828
Alw21I GWGCWC 3 cut(s) 51, 311, 1066
Alw26I GTCTC 6 cut(s) 18, 97, 369, 787, 941, 1017
AlwI GGATC 1 cut(s) 589
AlwNI CAGNNNCTG 1 cut(s) 1031
AoxI GGCC 6 cut(s) 549, 606, 757, 1744, 1796, 1890
ApeKI GCWGC 1 cut(s) 1999
ApoI RAATTY 3 cut(s) 929, 1346, 1975
ArsI GACNNNNNNTTYG 2 cut(s) 844, 876
AspLEI GCGC 1 cut(s) 708
AspS9I GGNCC 5 cut(s) 549, 606, 1744, 1796, 1890
AsuHPI GGTGA 1 cut(s) 1909
BaeI ACNNNNGTAYC 2 cut(s) 1475, 1508
BalI TGGCCA 1 cut(s) 759
BanI GGYRCC 1 cut(s) 557
BanII GRGCYC 3 cut(s) 51, 311, 1066
BbsI GAAGAC 2 cut(s) 226, 854
Bbv12I GWGCWC 3 cut(s) 51, 311, 1066
BbvI GCAGC 1 cut(s) 1986
BceAI ACGGC 3 cut(s) 982, 1468, 1474
BcgI CGANNNNNNTGC 4 cut(s) 1121, 1155, 1992, 2026
BciT130I CCWGG 1 cut(s) 830
BciVI GTATCC 1 cut(s) 1159
BclI TGATCA 1 cut(s) 1899
BcoDI GTCTC 6 cut(s) 18, 97, 369, 787, 941, 1017
BfaI CTAG 4 cut(s) 156, 206, 1185, 1985
BfmI CTRYAG 1 cut(s) 1004
BfrI CTTAAG 3 cut(s) 1816, 2048, 2063
BfuAI ACCTGC 1 cut(s) 1489
BfuI GTATCC 1 cut(s) 1159
BglI GCCNNNNNGGC 1 cut(s) 1495
BisI GCNGC 3 cut(s) 709, 823, 2000
BlpI GCTNAGC 2 cut(s) 243, 1032
BlsI GCNGC 3 cut(s) 710, 824, 2001
BmcAI AGTACT 3 cut(s) 325, 787, 1782
Bme1390I CCNGG 1 cut(s) 830
BmgBI CACGTC 1 cut(s) 1641
BmgT120I GGNCC 5 cut(s) 549, 606, 1744, 1796, 1890
BmiI GGNNCC 3 cut(s) 559, 607, 693
BmrFI CCNGG 1 cut(s) 830
BmrI ACTGGG 3 cut(s) 1389, 1660, 1917
BmsI GCATC 7 cut(s) 393, 404, 468, 1129, 1330, 1420, 1971
BmuI ACTGGG 3 cut(s) 1389, 1660, 1917
BpiI GAAGAC 2 cut(s) 226, 854
BplI GAGNNNNNCTC 2 cut(s) 1585, 1617
BpmI CTGGAG 1 cut(s) 221
Bpu1102I GCTNAGC 2 cut(s) 243, 1032
BsaI GGTCTC 1 cut(s) 1017
BsaJI CCNNGG 4 cut(s) 355, 1143, 1450, 1893
BsaXI ACNNNNNCTCC 2 cut(s) 1625, 1655
Bsc4I CCNNNNNNNGG 6 cut(s) 604, 647, 829, 1379, 1630, 1763
Bse118I RCCGGY 1 cut(s) 1870
Bse1I ACTGG 8 cut(s) 331, 342, 783, 1384, 1655, 1703, 1912, 1948
Bse3DI GCAATG 2 cut(s) 1218, 1329
BseBI CCWGG 1 cut(s) 830
BseDI CCNNGG 4 cut(s) 355, 1143, 1450, 1893
BseGI GGATG 6 cut(s) 15, 187, 652, 811, 1199, 2137
BseLI CCNNNNNNNGG 6 cut(s) 604, 647, 829, 1379, 1630, 1763
BseMI GCAATG 2 cut(s) 1218, 1329
BseMII CTCAG 3 cut(s) 257, 936, 1023
BseNI ACTGG 8 cut(s) 331, 342, 783, 1384, 1655, 1703, 1912, 1948
BseXI GCAGC 1 cut(s) 1986
BseYI CCCAGC 3 cut(s) 440, 655, 1930
BsgI GTGCAG 1 cut(s) 1137
BshFI GGCC 6 cut(s) 551, 608, 759, 1746, 1798, 1892
BshNI GGYRCC 1 cut(s) 557
BsiHKAI GWGCWC 3 cut(s) 51, 311, 1066
BsiSI CCGG 1 cut(s) 1871
BslFI GGGAC 1 cut(s) 1084
BslI CCNNNNNNNGG 6 cut(s) 604, 647, 829, 1379, 1630, 1763
BsmAI GTCTC 6 cut(s) 18, 97, 369, 787, 941, 1017
BsmBI CGTCTC 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 1084
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 6 cut(s) 551, 608, 759, 1746, 1798, 1892
Bso31I GGTCTC 1 cut(s) 1017
Bsp1286I GDGCHC 3 cut(s) 51, 311, 1066
Bsp1407I TGTACA 2 cut(s) 1828, 1924
Bsp143I GATC 4 cut(s) 594, 1899, 1960, 2003
Bsp1720I GCTNAGC 2 cut(s) 243, 1032
BspACI CCGC 5 cut(s) 96, 117, 709, 803, 823
BspANI GGCC 6 cut(s) 551, 608, 759, 1746, 1798, 1892
BspCNI CTCAG 3 cut(s) 256, 937, 1024
BspLI GGNNCC 3 cut(s) 559, 607, 693
BspMI ACCTGC 1 cut(s) 1489
BspPI GGATC 1 cut(s) 589
BspQI GCTCTTC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 557
BspTI CTTAAG 3 cut(s) 1816, 2048, 2063
BspTNI GGTCTC 1 cut(s) 1017
BsrDI GCAATG 2 cut(s) 1218, 1329
BsrFI RCCGGY 1 cut(s) 1870
BsrGI TGTACA 2 cut(s) 1828, 1924
BsrI ACTGG 8 cut(s) 331, 342, 783, 1384, 1655, 1703, 1912, 1948
BssAI RCCGGY 1 cut(s) 1870
BssECI CCNNGG 4 cut(s) 355, 1143, 1450, 1893
BssMI GATC 4 cut(s) 594, 1899, 1960, 2003
BssNAI GTATAC 1 cut(s) 1277
BssT1I CCWWGG 2 cut(s) 355, 1893
Bst1107I GTATAC 1 cut(s) 1277
Bst2UI CCWGG 1 cut(s) 830
Bst4CI ACNGT 5 cut(s) 335, 1008, 1390, 1664, 1780
Bst6I CTCTTC 5 cut(s) 39, 222, 394, 1838, 2021
BstAFI CTTAAG 3 cut(s) 1816, 2048, 2063
BstAUI TGTACA 2 cut(s) 1828, 1924
BstDEI CTNAG 3 cut(s) 243, 945, 1032
BstDSI CCRYGG 1 cut(s) 1450
BstF5I GGATG 6 cut(s) 15, 187, 652, 811, 1199, 2137
BstHHI GCGC 1 cut(s) 708
BstKTI GATC 4 cut(s) 597, 1902, 1963, 2006
BstMAI GTCTC 6 cut(s) 18, 97, 369, 787, 941, 1017
BstMBI GATC 4 cut(s) 594, 1899, 1960, 2003
BstMWI GCNNNNNNNGC 2 cut(s) 557, 1495
BstNI CCWGG 1 cut(s) 830
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 1 cut(s) 828
BstSFI CTRYAG 1 cut(s) 1004
BstV1I GCAGC 1 cut(s) 1986
BstV2I GAAGAC 2 cut(s) 226, 854
BstX2I RGATCY 1 cut(s) 594
BstYI RGATCY 1 cut(s) 594
BstZ17I GTATAC 1 cut(s) 1277
BsuI GTATCC 1 cut(s) 1159
BsuRI GGCC 6 cut(s) 551, 608, 759, 1746, 1798, 1892
BtgI CCRYGG 1 cut(s) 1450
BtgZI GCGATG 1 cut(s) 381
BtrI CACGTC 1 cut(s) 1641
BtsCI GGATG 6 cut(s) 15, 187, 652, 811, 1199, 2137
BtsIMutI CAGTG 3 cut(s) 1013, 1660, 1710
BveI ACCTGC 1 cut(s) 1489
CaiI CAGNNNCTG 1 cut(s) 1031
CfoI GCGC 1 cut(s) 708
Cfr10I RCCGGY 1 cut(s) 1870
Cfr13I GGNCC 5 cut(s) 549, 606, 1744, 1796, 1890
CviAII CATG 6 cut(s) 503, 514, 688, 896, 1067, 1856
DdeI CTNAG 3 cut(s) 243, 945, 1032
DpnI GATC 4 cut(s) 596, 1901, 1962, 2005
DpnII GATC 4 cut(s) 594, 1899, 1960, 2003
DraIII CACNNNGTG 1 cut(s) 1718
EaeI YGGCCR 1 cut(s) 757
Eam1104I CTCTTC 5 cut(s) 39, 222, 394, 1838, 2021
EarI CTCTTC 5 cut(s) 39, 222, 394, 1838, 2021
EciI GGCGGA 2 cut(s) 85, 106
Ecl136II GAGCTC 3 cut(s) 49, 309, 1064
Eco130I CCWWGG 2 cut(s) 355, 1893
Eco24I GRGCYC 3 cut(s) 51, 311, 1066
Eco31I GGTCTC 1 cut(s) 1017
Eco53kI GAGCTC 3 cut(s) 49, 309, 1064
Eco57I CTGAAG 3 cut(s) 315, 375, 717
EcoICRI GAGCTC 3 cut(s) 49, 309, 1064
EcoRI GAATTC 1 cut(s) 929
EcoRII CCWGG 1 cut(s) 828
EcoT14I CCWWGG 2 cut(s) 355, 1893
EcoT38I GRGCYC 3 cut(s) 51, 311, 1066
ErhI CCWWGG 2 cut(s) 355, 1893
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 6 cut(s) 506, 517, 691, 899, 1070, 1859
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 1 cut(s) 1084
FatI CATG 6 cut(s) 502, 513, 687, 895, 1066, 1855
FauNDI CATATG 1 cut(s) 1438
FbaI TGATCA 1 cut(s) 1899
FblI GTMKAC 1 cut(s) 1276
Fnu4HI GCNGC 3 cut(s) 709, 823, 2000
FokI GGATG 6 cut(s) 22, 194, 659, 818, 1206, 2144
FriOI GRGCYC 3 cut(s) 51, 311, 1066
Fsp4HI GCNGC 3 cut(s) 709, 823, 2000
FspBI CTAG 4 cut(s) 156, 206, 1185, 1985
GlaI GCGC 1 cut(s) 707
GluI GCNGC 3 cut(s) 709, 823, 2000
GsaI CCCAGC 3 cut(s) 444, 659, 1934
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 6 cut(s) 551, 608, 759, 1746, 1798, 1892
HapII CCGG 1 cut(s) 1871
HhaI GCGC 1 cut(s) 708
Hin1II CATG 6 cut(s) 506, 517, 691, 899, 1070, 1859
Hin6I GCGC 1 cut(s) 706
HinP1I GCGC 1 cut(s) 706
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 1694
HinfI GANTC 6 cut(s) 113, 290, 847, 1474, 1570, 1936
HpaII CCGG 1 cut(s) 1871
HphI GGTGA 1 cut(s) 1909
Hpy166II GTNNAC 6 cut(s) 55, 148, 508, 1252, 1277, 1667
Hpy188I TCNGA 5 cut(s) 23, 295, 733, 1482, 1611
Hpy188III TCNNGA 4 cut(s) 671, 778, 1352, 1964
Hpy8I GTNNAC 6 cut(s) 55, 148, 508, 1252, 1277, 1667
HpyAV CCTTC 2 cut(s) 1624, 2062
HpyCH4III ACNGT 5 cut(s) 335, 1008, 1390, 1664, 1780
HpyCH4IV ACGT 4 cut(s) 141, 277, 1640, 2082
HpyCH4V TGCA 3 cut(s) 584, 964, 1118
HpyF10VI GCNNNNNNNGC 2 cut(s) 557, 1495
HpyF3I CTNAG 3 cut(s) 243, 945, 1032
HpySE526I ACGT 4 cut(s) 141, 277, 1640, 2082
Hsp92II CATG 6 cut(s) 506, 517, 691, 899, 1070, 1859
HspAI GCGC 1 cut(s) 706
Ksp22I TGATCA 1 cut(s) 1899
Kzo9I GATC 4 cut(s) 594, 1899, 1960, 2003
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 4 cut(s) 202, 306, 1061, 1438
Lsp1109I GCAGC 1 cut(s) 1986
LweI GCATC 7 cut(s) 393, 404, 468, 1129, 1330, 1420, 1971
MaeI CTAG 4 cut(s) 156, 206, 1185, 1985
MaeII ACGT 4 cut(s) 141, 277, 1640, 2082
MaeIII GTNAC 3 cut(s) 329, 1445, 1705
MalI GATC 4 cut(s) 596, 1901, 1962, 2005
MboI GATC 4 cut(s) 594, 1899, 1960, 2003
MflI RGATCY 1 cut(s) 594
MhlI GDGCHC 3 cut(s) 51, 311, 1066
MlsI TGGCCA 1 cut(s) 759
MluNI TGGCCA 1 cut(s) 759
MlyI GAGTC 2 cut(s) 841, 1579
Mox20I TGGCCA 1 cut(s) 759
MscI TGGCCA 1 cut(s) 759
MseI TTAA 9 cut(s) 195, 320, 665, 1050, 1179, 1698, 1817, 2049, 2064
MslI CAYNNNNRTG 2 cut(s) 528, 544
Msp20I TGGCCA 1 cut(s) 759
MspA1I CMGCKG 3 cut(s) 711, 1930, 1954
MspCI CTTAAG 3 cut(s) 1816, 2048, 2063
MspI CCGG 1 cut(s) 1871
MspR9I CCNGG 1 cut(s) 830
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 1 cut(s) 830
MwoI GCNNNNNNNGC 2 cut(s) 557, 1495
NdeI CATATG 1 cut(s) 1438
NdeII GATC 4 cut(s) 594, 1899, 1960, 2003
NlaIII CATG 6 cut(s) 506, 517, 691, 899, 1070, 1859
NlaIV GGNNCC 3 cut(s) 559, 607, 693
NmeAIII GCCGAG 2 cut(s) 1168, 1593
NmuCI GTSAC 2 cut(s) 329, 1705
NspI RCATGY 1 cut(s) 506
PciI ACATGT 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 39
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 57
PctI GAATGC 1 cut(s) 535
PfeI GAWTC 4 cut(s) 113, 290, 1474, 1936
PflMI CCANNNNNTGG 1 cut(s) 647
PkrI GCNGC 3 cut(s) 710, 824, 2001
PleI GAGTC 2 cut(s) 841, 1578
PpsI GAGTC 2 cut(s) 841, 1578
PscI ACATGT 1 cut(s) 502
PsiI TTATAA 1 cut(s) 1089
Psp124BI GAGCTC 3 cut(s) 51, 311, 1066
Psp6I CCWGG 1 cut(s) 828
PspFI CCCAGC 3 cut(s) 440, 655, 1930
PspGI CCWGG 1 cut(s) 828
PspN4I GGNNCC 3 cut(s) 559, 607, 693
PspPI GGNCC 5 cut(s) 549, 606, 1744, 1796, 1890
PstNI CAGNNNCTG 1 cut(s) 1031
PsuI RGATCY 1 cut(s) 594
PvuII CAGCTG 2 cut(s) 1930, 1954
RseI CAYNNNNRTG 2 cut(s) 528, 544
SacI GAGCTC 3 cut(s) 51, 311, 1066
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 9 cut(s) 195, 320, 665, 1050, 1179, 1698, 1817, 2049, 2064
SatI GCNGC 3 cut(s) 709, 823, 2000
Sau3AI GATC 4 cut(s) 594, 1899, 1960, 2003
Sau96I GGNCC 5 cut(s) 549, 606, 1744, 1796, 1890
ScaI AGTACT 3 cut(s) 325, 787, 1782
SchI GAGTC 2 cut(s) 841, 1579
ScrFI CCNGG 1 cut(s) 830
SduI GDGCHC 3 cut(s) 51, 311, 1066
SfaNI GCATC 7 cut(s) 393, 404, 468, 1129, 1330, 1420, 1971
SfcI CTRYAG 1 cut(s) 1004
SmiMI CAYNNNNRTG 2 cut(s) 528, 544
SmlI CTYRAG 3 cut(s) 1816, 2048, 2063
SmoI CTYRAG 3 cut(s) 1816, 2048, 2063
SsiI CCGC 5 cut(s) 96, 117, 709, 803, 823
SspMI CTAG 4 cut(s) 156, 206, 1185, 1985
SstI GAGCTC 3 cut(s) 51, 311, 1066
StyD4I CCNGG 1 cut(s) 828
StyI CCWWGG 2 cut(s) 355, 1893
TaaI ACNGT 5 cut(s) 335, 1008, 1390, 1664, 1780
TaiI ACGT 4 cut(s) 144, 280, 1643, 2085
TaqI TCGA 3 cut(s) 527, 743, 1131
TatI WGTACW 6 cut(s) 323, 785, 1266, 1780, 1828, 1924
TauI GCSGC 2 cut(s) 711, 825
TfiI GAWTC 4 cut(s) 113, 290, 1474, 1936
Tru1I TTAA 9 cut(s) 195, 320, 665, 1050, 1179, 1698, 1817, 2049, 2064
Tru9I TTAA 9 cut(s) 195, 320, 665, 1050, 1179, 1698, 1817, 2049, 2064
TscAI CASTG 3 cut(s) 1013, 1667, 1710
TseFI GTSAC 2 cut(s) 329, 1705
TseI GCWGC 1 cut(s) 1999
Tsp45I GTSAC 2 cut(s) 329, 1705
TspDTI ATGAA 6 cut(s) 180, 1224, 1715, 1856, 2090, 2106
TspGWI ACGGA 3 cut(s) 79, 1235, 1613
TspRI CASTG 3 cut(s) 1013, 1667, 1710
Van91I CCANNNNNTGG 1 cut(s) 647
Vha464I CTTAAG 3 cut(s) 1816, 2048, 2063
XapI RAATTY 3 cut(s) 929, 1346, 1975
XceI RCATGY 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 767
XmiI GTMKAC 1 cut(s) 1276
XspI CTAG 4 cut(s) 156, 206, 1185, 1985
ZrmI AGTACT 3 cut(s) 325, 787, 1782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.