Rorug05G0299900

Zinc finger, C3HC4 type (RING finger)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
34851415 .. 34853399
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0299900.1

Sequence Viewer

Length: 1542 bp
ATGGATAAGAGTTGGATTAACATAGGGAACAGATGGTCAAAGAGGGTTATTGATGGTTATGAAGAATTTCTGAAGTTTGCATACACTAATAGGAAGGAAAGTGAATTGATAACTTGTCCATGTAGAAAATGTTGCAACCGACCCATTTATTTTCCTAAAGAAACTATCCGAAAACATCTCAAAGATAATGGCTTCTTGAGAAAGTATACGAATTGGATTAACCACGGAGAGCCTCCAATTGCTACTAACCATGCCAACTCTGAAGTTGATTTAAATGTCCAAGATGATATGTTTGAAATGCTGCATGAAGCTATGGGCATTCCAAACATGGGTGAAACTGATGATCCTCCATCAGATGATCCCCAAGTTGGGCCAAACCAAACTACTGCTCATTTTTTAAAGCTGTTGGAAGGTGCACAACTTCCACTATATCCGGGCTGTACACGCTTTACTGCCTTATCATTCATTGTTCGAATGATGCATAATAAAGTGTTGCATGGGTGGTCAGATAAATCATTCACGGGTTTACTCAAGAACTTGGCTAGTGCTTTCCCGGAGGGTGTGTTACTTCCCAAGTCCTACTATGAGGCTAGAAAGATAACAAAAGATTTAGGTTTCACCTATCAAACTTGGGATGCATGTAGGAACAACTGCATGTTGTTCCGAAATGATGACATAAACCTTGATGAATGTAAAGTATGCAAGAAGTCTAGATGGGAAGACAAAAAAGACTCTACAGCTGATGTTGGAACTAGAAAATCTAAAAGAAAAGCAGTAAAACAAGTTAGATACTTTCCTTTGAAGCCAAGGCTGAAAAGGCTGTTTATGTCTTCAAAAACAGCAAAACTGATGAGATGGCATGCAGAAGAGAGAGAAAATGATGGTGACCATAAGAGCAAAACAAAATTGTTTCACTATGTGCCCAACAAGAACGATCCTGAACTTAGTTCGAAAAATCCTCCACATATTGTTGTAGAACAATGGTCTGAGCTTGTTGCATATTGGAGTAGTGAAGATGCAAAGGTGATAGCAGAAAGAAACTCAATTAATCGGGAGCTGCGTGGCCCATGTCACAAGACCGGTCGAAAACATTTTGCCCAAGTGCGATATGAGATGGAAAAATCTGGAGAATCAGTTGATAAGTTTAGTGTCTGGAAGAGAACACGTGACTTGAATGATCAACTTGTGCAAGAGTTCATTAAATCATATGAGGAGAAACTTAGAAAGGAGTCGGAGGAGGATCAGAACTTGACAAGTGTTAAAGACCGAATTTTCCACTCTGTGATGGGAGATGATGGTCATGGGTATTGTCGTACTTTTGGAGCTGGTGTGCCTCGTAGTCTAGTATATCCAAAGGAGTCAAATATATCTCAAAGCACAGATGATCTCGTACAAAAAATCACTGAACAAGTGCGTCAAGAGTTTCAAGTGCAGCTTCAGCAACTACATGCTCGAATTGATTTTCTGCAGAATAAGGACACTAGCACAGAATCTCCTAGACAGGTTGAGTACAAACTTTATATGCAGATATGTGGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

513

Amino Acids

59.87

Weight (kDa)

8.83

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 77 1.6e-19 Transposase-associated domain
Transposase_24 PF03004 326 - 444 2.3e-21 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1540
AccI GTMKAC 1 cut(s) 206
AclWI GGATC 4 cut(s) 338, 353, 929, 1248
AcsI RAATTY 2 cut(s) 65, 1269
AcuI CTGAAG 3 cut(s) 92, 282, 1421
AcvI CACGTG 1 cut(s) 1166
AdeI CACNNNGTG 2 cut(s) 919, 1282
AfaI GTAC 4 cut(s) 442, 1315, 1392, 1511
AfiI CCNNNNNNNGG 3 cut(s) 329, 368, 369
AflIII ACRYGT 1 cut(s) 1163
AgeI ACCGGT 1 cut(s) 1079
AgsI TTSAA 5 cut(s) 296, 802, 834, 1174, 1427
AluBI AGCT 7 cut(s) 311, 403, 740, 991, 1057, 1325, 1435
AluI AGCT 7 cut(s) 311, 403, 740, 991, 1057, 1325, 1435
Alw21I GWGCWC 1 cut(s) 418
Alw44I GTGCAC 1 cut(s) 414
AlwI GGATC 4 cut(s) 338, 353, 929, 1248
AoxI GGCC 2 cut(s) 371, 1063
ApaLI GTGCAC 1 cut(s) 414
ApeKI GCWGC 3 cut(s) 301, 1057, 1432
ApoI RAATTY 2 cut(s) 65, 1269
AseI ATTAAT 1 cut(s) 1047
AsiGI ACCGGT 1 cut(s) 1079
Asp700I GAANNNNTTC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 371, 1064
AsuC2I CCSGG 2 cut(s) 435, 554
AsuHPI GGTGA 4 cut(s) 344, 610, 896, 1036
AsuII TTCGAA 2 cut(s) 472, 950
BaeGI GKGCMC 2 cut(s) 418, 924
BarI GAAGNNNNNNTAC 2 cut(s) 65, 97
BbrPI CACGTG 1 cut(s) 1166
BbsI GAAGAC 2 cut(s) 726, 822
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 3 cut(s) 288, 1044, 1444
BccI CCATC 9 cut(s) 27, 47, 358, 708, 849, 875, 1108, 1279, 1289
BclI TGATCA 1 cut(s) 1177
BcnI CCSGG 2 cut(s) 435, 554
BfaI CTAG 7 cut(s) 543, 591, 711, 753, 1343, 1482, 1497
BfmI CTRYAG 2 cut(s) 735, 1466
BisI GCNGC 3 cut(s) 302, 1058, 1433
BlsI GCNGC 3 cut(s) 303, 1059, 1434
Bme1390I CCNGG 2 cut(s) 435, 554
BmgT120I GGNCC 2 cut(s) 371, 1064
BmrFI CCNGG 2 cut(s) 435, 554
BmsI GCATC 3 cut(s) 468, 625, 1006
BpiI GAAGAC 2 cut(s) 726, 822
BpmI CTGGAG 1 cut(s) 1146
Bpu14I TTCGAA 2 cut(s) 472, 950
BpuEI CTTGAG 2 cut(s) 217, 515
BpuMI CCSGG 2 cut(s) 435, 554
BsaAI YACGTR 1 cut(s) 1166
BsaJI CCNNGG 2 cut(s) 223, 806
BsaWI WCCGGW 1 cut(s) 1079
BsaXI ACNNNNNCTCC 8 cut(s) 548, 578, 1119, 1149, 1314, 1344, 1477, 1507
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 368, 369
Bse118I RCCGGY 1 cut(s) 1079
BseDI CCNNGG 2 cut(s) 223, 806
BseGI GGATG 1 cut(s) 640
BseLI CCNNNNNNNGG 3 cut(s) 329, 368, 369
BseMII CTCAG 1 cut(s) 978
BseRI GAGGAG 2 cut(s) 1226, 1250
BseSI GKGCMC 2 cut(s) 418, 924
BseXI GCAGC 3 cut(s) 288, 1044, 1444
BsgI GTGCAG 1 cut(s) 1451
Bsh1285I CGRYCG 1 cut(s) 1084
BshFI GGCC 2 cut(s) 373, 1065
BshTI ACCGGT 1 cut(s) 1079
BsiEI CGRYCG 1 cut(s) 1084
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 3 cut(s) 434, 554, 1080
BslI CCNNNNNNNGG 3 cut(s) 329, 368, 369
BsmI GAATGC 1 cut(s) 318
BsnI GGCC 2 cut(s) 373, 1065
Bsp119I TTCGAA 2 cut(s) 472, 950
Bsp1286I GDGCHC 2 cut(s) 418, 924
Bsp1407I TGTACA 1 cut(s) 440
Bsp143I GATC 6 cut(s) 343, 358, 934, 1177, 1240, 1384
BspANI GGCC 2 cut(s) 373, 1065
BspCNI CTCAG 1 cut(s) 979
BspMAI CTGCAG 1 cut(s) 1470
BspPI GGATC 4 cut(s) 338, 353, 929, 1248
BspT104I TTCGAA 2 cut(s) 472, 950
BsrFI RCCGGY 1 cut(s) 1079
BsrGI TGTACA 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 1079
BssECI CCNNGG 2 cut(s) 223, 806
BssMI GATC 6 cut(s) 343, 358, 934, 1177, 1240, 1384
BssNAI GTATAC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 806
Bst1107I GTATAC 1 cut(s) 207
Bst6I CTCTTC 2 cut(s) 861, 1151
BstAUI TGTACA 1 cut(s) 440
BstBAI YACGTR 1 cut(s) 1166
BstBI TTCGAA 2 cut(s) 472, 950
BstC8I GCNNGC 1 cut(s) 861
BstDEI CTNAG 3 cut(s) 944, 987, 1220
BstDSI CCRYGG 1 cut(s) 223
BstEII GGTNACC 1 cut(s) 884
BstF5I GGATG 1 cut(s) 640
BstKTI GATC 6 cut(s) 346, 361, 937, 1180, 1243, 1387
BstMBI GATC 6 cut(s) 343, 358, 934, 1177, 1240, 1384
BstMCI CGRYCG 1 cut(s) 1084
BstMWI GCNNNNNNNGC 3 cut(s) 444, 817, 1438
BstNSI RCATGY 4 cut(s) 642, 658, 863, 1451
BstPI GGTNACC 1 cut(s) 884
BstSCI CCNGG 2 cut(s) 433, 552
BstSFI CTRYAG 2 cut(s) 735, 1466
BstSLI GKGCMC 2 cut(s) 418, 924
BstV1I GCAGC 3 cut(s) 288, 1044, 1444
BstV2I GAAGAC 2 cut(s) 726, 822
BstZ17I GTATAC 1 cut(s) 207
BsuRI GGCC 2 cut(s) 373, 1065
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 640
BtsIMutI CAGTG 1 cut(s) 1401
Cac8I GCNNGC 1 cut(s) 861
Cfr10I RCCGGY 1 cut(s) 1079
Cfr13I GGNCC 2 cut(s) 371, 1064
CseI GACGC 1 cut(s) 1403
Csp6I GTAC 4 cut(s) 441, 1314, 1391, 1510
CspAI ACCGGT 1 cut(s) 1079
CviQI GTAC 4 cut(s) 441, 1314, 1391, 1510
DdeI CTNAG 3 cut(s) 944, 987, 1220
DpnI GATC 6 cut(s) 345, 360, 936, 1179, 1242, 1386
DpnII GATC 6 cut(s) 343, 358, 934, 1177, 1240, 1384
DraI TTTAAA 2 cut(s) 273, 399
DraIII CACNNNGTG 2 cut(s) 919, 1282
Eam1104I CTCTTC 2 cut(s) 861, 1151
EarI CTCTTC 2 cut(s) 861, 1151
Eco130I CCWWGG 1 cut(s) 806
Eco57I CTGAAG 3 cut(s) 92, 282, 1421
Eco72I CACGTG 1 cut(s) 1166
Eco91I GGTNACC 1 cut(s) 884
EcoO65I GGTNACC 1 cut(s) 884
EcoT14I CCWWGG 1 cut(s) 806
EcoT22I ATGCAT 2 cut(s) 483, 640
ErhI CCWWGG 1 cut(s) 806
FalI AAGNNNNNCTT 2 cut(s) 1419, 1451
FauNDI CATATG 1 cut(s) 1207
FbaI TGATCA 1 cut(s) 1177
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 3 cut(s) 302, 1058, 1433
FokI GGATG 1 cut(s) 647
Fsp4HI GCNGC 3 cut(s) 302, 1058, 1433
FspBI CTAG 7 cut(s) 543, 591, 711, 753, 1343, 1482, 1497
GluI GCNGC 3 cut(s) 302, 1058, 1433
GsuI CTGGAG 1 cut(s) 1146
HaeIII GGCC 2 cut(s) 373, 1065
HapII CCGG 3 cut(s) 434, 554, 1080
HgaI GACGC 1 cut(s) 1403
HinfI GANTC 5 cut(s) 731, 1130, 1229, 1358, 1490
HpaII CCGG 3 cut(s) 434, 554, 1080
HphI GGTGA 4 cut(s) 344, 610, 896, 1036
Hpy166II GTNNAC 4 cut(s) 207, 416, 443, 527
Hpy188I TCNGA 9 cut(s) 72, 170, 262, 355, 508, 665, 988, 1234, 1245
Hpy188III TCNNGA 8 cut(s) 196, 532, 711, 938, 1052, 1125, 1153, 1418
Hpy8I GTNNAC 4 cut(s) 207, 416, 443, 527
HpyAV CCTTC 2 cut(s) 88, 404
HpyCH4IV ACGT 1 cut(s) 1165
HpyF10VI GCNNNNNNNGC 3 cut(s) 444, 817, 1438
HpyF3I CTNAG 3 cut(s) 944, 987, 1220
HpySE526I ACGT 1 cut(s) 1165
Ksp22I TGATCA 1 cut(s) 1177
Kzo9I GATC 6 cut(s) 343, 358, 934, 1177, 1240, 1384
LmnI GCTCC 2 cut(s) 1054, 1322
LpnPI CCDG 8 cut(s) 447, 567, 951, 1093, 1110, 1138, 1311, 1487
Lsp1109I GCAGC 3 cut(s) 288, 1044, 1444
LweI GCATC 3 cut(s) 468, 625, 1006
MaeI CTAG 7 cut(s) 543, 591, 711, 753, 1343, 1482, 1497
MaeII ACGT 1 cut(s) 1165
MaeIII GTNAC 4 cut(s) 564, 884, 1070, 1166
MalI GATC 6 cut(s) 345, 360, 936, 1179, 1242, 1386
MboI GATC 6 cut(s) 343, 358, 934, 1177, 1240, 1384
MboII GAAGA 6 cut(s) 74, 731, 822, 878, 1025, 1168
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 2 cut(s) 418, 924
MluCI AATT 8 cut(s) 65, 104, 211, 237, 905, 1044, 1269, 1455
MlyI GAGTC 3 cut(s) 725, 1238, 1367
MmeI TCCRAC 3 cut(s) 387, 727, 1212
Mph1103I ATGCAT 2 cut(s) 483, 640
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 7 cut(s) 18, 219, 272, 398, 1047, 1200, 1260
MspA1I CMGCKG 1 cut(s) 740
MspI CCGG 3 cut(s) 434, 554, 1080
MspR9I CCNGG 2 cut(s) 435, 554
MunI CAATTG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 444, 817, 1438
NciI CCSGG 2 cut(s) 435, 554
NdeI CATATG 1 cut(s) 1207
NdeII GATC 6 cut(s) 343, 358, 934, 1177, 1240, 1384
NmuCI GTSAC 3 cut(s) 884, 1070, 1166
NsiI ATGCAT 2 cut(s) 483, 640
NspI RCATGY 4 cut(s) 642, 658, 863, 1451
NspV TTCGAA 2 cut(s) 472, 950
PaeI GCATGC 1 cut(s) 863
PcsI WCGNNNNNNNCGW 1 cut(s) 1057
PctI GAATGC 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 2 cut(s) 1130, 1490
PfoI TCCNGGA 1 cut(s) 552
PinAI ACCGGT 1 cut(s) 1079
PkrI GCNGC 3 cut(s) 303, 1059, 1434
PleI GAGTC 3 cut(s) 725, 1237, 1366
PmaCI CACGTG 1 cut(s) 1166
PmlI CACGTG 1 cut(s) 1166
PpsI GAGTC 3 cut(s) 725, 1237, 1366
Ppu21I YACGTR 1 cut(s) 1166
PshBI ATTAAT 1 cut(s) 1047
PsiI TTATAA 1 cut(s) 1540
PspCI CACGTG 1 cut(s) 1166
PspEI GGTNACC 1 cut(s) 884
PspPI GGNCC 2 cut(s) 371, 1064
PstI CTGCAG 1 cut(s) 1470
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 4 cut(s) 442, 1315, 1392, 1511
RsaNI GTAC 4 cut(s) 441, 1314, 1391, 1510
SaqAI TTAA 7 cut(s) 18, 219, 272, 398, 1047, 1200, 1260
SatI GCNGC 3 cut(s) 302, 1058, 1433
Sau3AI GATC 6 cut(s) 343, 358, 934, 1177, 1240, 1384
Sau96I GGNCC 2 cut(s) 371, 1064
SchI GAGTC 3 cut(s) 725, 1238, 1367
ScrFI CCNGG 2 cut(s) 435, 554
SduI GDGCHC 2 cut(s) 418, 924
SfaNI GCATC 3 cut(s) 468, 625, 1006
SfcI CTRYAG 2 cut(s) 735, 1466
SfuI TTCGAA 2 cut(s) 472, 950
SmiI ATTTAAAT 1 cut(s) 273
SmlI CTYRAG 2 cut(s) 196, 530
SmoI CTYRAG 2 cut(s) 196, 530
SphI GCATGC 1 cut(s) 863
Sse9I AATT 8 cut(s) 65, 104, 211, 237, 905, 1044, 1269, 1455
SspMI CTAG 7 cut(s) 543, 591, 711, 753, 1343, 1482, 1497
StyD4I CCNGG 2 cut(s) 433, 552
StyI CCWWGG 1 cut(s) 806
SwaI ATTTAAAT 1 cut(s) 273
TaiI ACGT 1 cut(s) 1168
TaqI TCGA 4 cut(s) 472, 950, 1084, 1453
TaqII GACCGA 1 cut(s) 1281
TasI AATT 8 cut(s) 65, 104, 211, 237, 905, 1044, 1269, 1455
TatI WGTACW 2 cut(s) 440, 1509
TfiI GAWTC 2 cut(s) 1130, 1490
Tru1I TTAA 7 cut(s) 18, 219, 272, 398, 1047, 1200, 1260
Tru9I TTAA 7 cut(s) 18, 219, 272, 398, 1047, 1200, 1260
TscAI CASTG 1 cut(s) 1408
TseFI GTSAC 3 cut(s) 884, 1070, 1166
TseI GCWGC 3 cut(s) 301, 1057, 1432
Tsp45I GTSAC 3 cut(s) 884, 1070, 1166
TspDTI ATGAA 5 cut(s) 75, 321, 454, 702, 1186
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 1408
VneI GTGCAC 1 cut(s) 414
VspI ATTAAT 1 cut(s) 1047
XapI RAATTY 2 cut(s) 65, 1269
XbaI TCTAGA 1 cut(s) 710
XceI RCATGY 4 cut(s) 642, 658, 863, 1451
XmiI GTMKAC 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 7 cut(s) 543, 591, 711, 753, 1343, 1482, 1497
Zsp2I ATGCAT 2 cut(s) 483, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.