Zinc finger, C3HC4 type (RING finger)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G27950 AT2G27950 AT2G27950 |
| fragaria_vesca | FvH4_3g30470 FvH4_3g30470 FvH4_3g30470 FvH4_3g30470 FvH4_3g30470 FvH4_3g30470 FvH4_3g30470 |
| malus_domestica | MD03G1127700.v1.1 MD11G1149900.v1.1 |
| prunus_persica | Prupe.6G114200_v2.0.a1 Prupe.6G114200_v2.0.a1 Prupe.6G114200_v2.0.a1 |
| pyrus_communis | pycom11g12270 |
| rosa_chinensis | RchiOBHm_Chr5g0056421 |
| rosa_laevigata | RLG00000035097 |
| rosa_multiflora | Rmu_sc0000317.1_g000039 |
| rosa_roxburghii | Rroxscaffold_1G00023890 |
| rosa_rugosa | Rorug05G0299300 Rorug05G0299400 Rorug05G0299500 Rorug05G0299600 Rorug05G0299700 Rorug05G0299700 Rorug05G0299800 Rorug05G0299900 |
| rosa_samantha | Rh5AG370300 Rh5BG381500 Rh5BG381700 Rh5CG404500 Rh5DG394500 |
| rosa_wichuraiana | Rw5G034690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1540 |
| AccI | GTMKAC | 1 cut(s) | 206 |
| AclWI | GGATC | 4 cut(s) | 338, 353, 929, 1248 |
| AcsI | RAATTY | 2 cut(s) | 65, 1269 |
| AcuI | CTGAAG | 3 cut(s) | 92, 282, 1421 |
| AcvI | CACGTG | 1 cut(s) | 1166 |
| AdeI | CACNNNGTG | 2 cut(s) | 919, 1282 |
| AfaI | GTAC | 4 cut(s) | 442, 1315, 1392, 1511 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 329, 368, 369 |
| AflIII | ACRYGT | 1 cut(s) | 1163 |
| AgeI | ACCGGT | 1 cut(s) | 1079 |
| AgsI | TTSAA | 5 cut(s) | 296, 802, 834, 1174, 1427 |
| AluBI | AGCT | 7 cut(s) | 311, 403, 740, 991, 1057, 1325, 1435 |
| AluI | AGCT | 7 cut(s) | 311, 403, 740, 991, 1057, 1325, 1435 |
| Alw21I | GWGCWC | 1 cut(s) | 418 |
| Alw44I | GTGCAC | 1 cut(s) | 414 |
| AlwI | GGATC | 4 cut(s) | 338, 353, 929, 1248 |
| AoxI | GGCC | 2 cut(s) | 371, 1063 |
| ApaLI | GTGCAC | 1 cut(s) | 414 |
| ApeKI | GCWGC | 3 cut(s) | 301, 1057, 1432 |
| ApoI | RAATTY | 2 cut(s) | 65, 1269 |
| AseI | ATTAAT | 1 cut(s) | 1047 |
| AsiGI | ACCGGT | 1 cut(s) | 1079 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 66 |
| AspS9I | GGNCC | 2 cut(s) | 371, 1064 |
| AsuC2I | CCSGG | 2 cut(s) | 435, 554 |
| AsuHPI | GGTGA | 4 cut(s) | 344, 610, 896, 1036 |
| AsuII | TTCGAA | 2 cut(s) | 472, 950 |
| BaeGI | GKGCMC | 2 cut(s) | 418, 924 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 65, 97 |
| BbrPI | CACGTG | 1 cut(s) | 1166 |
| BbsI | GAAGAC | 2 cut(s) | 726, 822 |
| Bbv12I | GWGCWC | 1 cut(s) | 418 |
| BbvI | GCAGC | 3 cut(s) | 288, 1044, 1444 |
| BccI | CCATC | 9 cut(s) | 27, 47, 358, 708, 849, 875, 1108, 1279, 1289 |
| BclI | TGATCA | 1 cut(s) | 1177 |
| BcnI | CCSGG | 2 cut(s) | 435, 554 |
| BfaI | CTAG | 7 cut(s) | 543, 591, 711, 753, 1343, 1482, 1497 |
| BfmI | CTRYAG | 2 cut(s) | 735, 1466 |
| BisI | GCNGC | 3 cut(s) | 302, 1058, 1433 |
| BlsI | GCNGC | 3 cut(s) | 303, 1059, 1434 |
| Bme1390I | CCNGG | 2 cut(s) | 435, 554 |
| BmgT120I | GGNCC | 2 cut(s) | 371, 1064 |
| BmrFI | CCNGG | 2 cut(s) | 435, 554 |
| BmsI | GCATC | 3 cut(s) | 468, 625, 1006 |
| BpiI | GAAGAC | 2 cut(s) | 726, 822 |
| BpmI | CTGGAG | 1 cut(s) | 1146 |
| Bpu14I | TTCGAA | 2 cut(s) | 472, 950 |
| BpuEI | CTTGAG | 2 cut(s) | 217, 515 |
| BpuMI | CCSGG | 2 cut(s) | 435, 554 |
| BsaAI | YACGTR | 1 cut(s) | 1166 |
| BsaJI | CCNNGG | 2 cut(s) | 223, 806 |
| BsaWI | WCCGGW | 1 cut(s) | 1079 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 548, 578, 1119, 1149, 1314, 1344, 1477, 1507 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 329, 368, 369 |
| Bse118I | RCCGGY | 1 cut(s) | 1079 |
| BseDI | CCNNGG | 2 cut(s) | 223, 806 |
| BseGI | GGATG | 1 cut(s) | 640 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 329, 368, 369 |
| BseMII | CTCAG | 1 cut(s) | 978 |
| BseRI | GAGGAG | 2 cut(s) | 1226, 1250 |
| BseSI | GKGCMC | 2 cut(s) | 418, 924 |
| BseXI | GCAGC | 3 cut(s) | 288, 1044, 1444 |
| BsgI | GTGCAG | 1 cut(s) | 1451 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1084 |
| BshFI | GGCC | 2 cut(s) | 373, 1065 |
| BshTI | ACCGGT | 1 cut(s) | 1079 |
| BsiEI | CGRYCG | 1 cut(s) | 1084 |
| BsiHKAI | GWGCWC | 1 cut(s) | 418 |
| BsiSI | CCGG | 3 cut(s) | 434, 554, 1080 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 329, 368, 369 |
| BsmI | GAATGC | 1 cut(s) | 318 |
| BsnI | GGCC | 2 cut(s) | 373, 1065 |
| Bsp119I | TTCGAA | 2 cut(s) | 472, 950 |
| Bsp1286I | GDGCHC | 2 cut(s) | 418, 924 |
| Bsp1407I | TGTACA | 1 cut(s) | 440 |
| Bsp143I | GATC | 6 cut(s) | 343, 358, 934, 1177, 1240, 1384 |
| BspANI | GGCC | 2 cut(s) | 373, 1065 |
| BspCNI | CTCAG | 1 cut(s) | 979 |
| BspMAI | CTGCAG | 1 cut(s) | 1470 |
| BspPI | GGATC | 4 cut(s) | 338, 353, 929, 1248 |
| BspT104I | TTCGAA | 2 cut(s) | 472, 950 |
| BsrFI | RCCGGY | 1 cut(s) | 1079 |
| BsrGI | TGTACA | 1 cut(s) | 440 |
| BssAI | RCCGGY | 1 cut(s) | 1079 |
| BssECI | CCNNGG | 2 cut(s) | 223, 806 |
| BssMI | GATC | 6 cut(s) | 343, 358, 934, 1177, 1240, 1384 |
| BssNAI | GTATAC | 1 cut(s) | 207 |
| BssT1I | CCWWGG | 1 cut(s) | 806 |
| Bst1107I | GTATAC | 1 cut(s) | 207 |
| Bst6I | CTCTTC | 2 cut(s) | 861, 1151 |
| BstAUI | TGTACA | 1 cut(s) | 440 |
| BstBAI | YACGTR | 1 cut(s) | 1166 |
| BstBI | TTCGAA | 2 cut(s) | 472, 950 |
| BstC8I | GCNNGC | 1 cut(s) | 861 |
| BstDEI | CTNAG | 3 cut(s) | 944, 987, 1220 |
| BstDSI | CCRYGG | 1 cut(s) | 223 |
| BstEII | GGTNACC | 1 cut(s) | 884 |
| BstF5I | GGATG | 1 cut(s) | 640 |
| BstKTI | GATC | 6 cut(s) | 346, 361, 937, 1180, 1243, 1387 |
| BstMBI | GATC | 6 cut(s) | 343, 358, 934, 1177, 1240, 1384 |
| BstMCI | CGRYCG | 1 cut(s) | 1084 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 444, 817, 1438 |
| BstNSI | RCATGY | 4 cut(s) | 642, 658, 863, 1451 |
| BstPI | GGTNACC | 1 cut(s) | 884 |
| BstSCI | CCNGG | 2 cut(s) | 433, 552 |
| BstSFI | CTRYAG | 2 cut(s) | 735, 1466 |
| BstSLI | GKGCMC | 2 cut(s) | 418, 924 |
| BstV1I | GCAGC | 3 cut(s) | 288, 1044, 1444 |
| BstV2I | GAAGAC | 2 cut(s) | 726, 822 |
| BstZ17I | GTATAC | 1 cut(s) | 207 |
| BsuRI | GGCC | 2 cut(s) | 373, 1065 |
| BtgI | CCRYGG | 1 cut(s) | 223 |
| BtsCI | GGATG | 1 cut(s) | 640 |
| BtsIMutI | CAGTG | 1 cut(s) | 1401 |
| Cac8I | GCNNGC | 1 cut(s) | 861 |
| Cfr10I | RCCGGY | 1 cut(s) | 1079 |
| Cfr13I | GGNCC | 2 cut(s) | 371, 1064 |
| CseI | GACGC | 1 cut(s) | 1403 |
| Csp6I | GTAC | 4 cut(s) | 441, 1314, 1391, 1510 |
| CspAI | ACCGGT | 1 cut(s) | 1079 |
| CviQI | GTAC | 4 cut(s) | 441, 1314, 1391, 1510 |
| DdeI | CTNAG | 3 cut(s) | 944, 987, 1220 |
| DpnI | GATC | 6 cut(s) | 345, 360, 936, 1179, 1242, 1386 |
| DpnII | GATC | 6 cut(s) | 343, 358, 934, 1177, 1240, 1384 |
| DraI | TTTAAA | 2 cut(s) | 273, 399 |
| DraIII | CACNNNGTG | 2 cut(s) | 919, 1282 |
| Eam1104I | CTCTTC | 2 cut(s) | 861, 1151 |
| EarI | CTCTTC | 2 cut(s) | 861, 1151 |
| Eco130I | CCWWGG | 1 cut(s) | 806 |
| Eco57I | CTGAAG | 3 cut(s) | 92, 282, 1421 |
| Eco72I | CACGTG | 1 cut(s) | 1166 |
| Eco91I | GGTNACC | 1 cut(s) | 884 |
| EcoO65I | GGTNACC | 1 cut(s) | 884 |
| EcoT14I | CCWWGG | 1 cut(s) | 806 |
| EcoT22I | ATGCAT | 2 cut(s) | 483, 640 |
| ErhI | CCWWGG | 1 cut(s) | 806 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1419, 1451 |
| FauNDI | CATATG | 1 cut(s) | 1207 |
| FbaI | TGATCA | 1 cut(s) | 1177 |
| FblI | GTMKAC | 1 cut(s) | 206 |
| Fnu4HI | GCNGC | 3 cut(s) | 302, 1058, 1433 |
| FokI | GGATG | 1 cut(s) | 647 |
| Fsp4HI | GCNGC | 3 cut(s) | 302, 1058, 1433 |
| FspBI | CTAG | 7 cut(s) | 543, 591, 711, 753, 1343, 1482, 1497 |
| GluI | GCNGC | 3 cut(s) | 302, 1058, 1433 |
| GsuI | CTGGAG | 1 cut(s) | 1146 |
| HaeIII | GGCC | 2 cut(s) | 373, 1065 |
| HapII | CCGG | 3 cut(s) | 434, 554, 1080 |
| HgaI | GACGC | 1 cut(s) | 1403 |
| HinfI | GANTC | 5 cut(s) | 731, 1130, 1229, 1358, 1490 |
| HpaII | CCGG | 3 cut(s) | 434, 554, 1080 |
| HphI | GGTGA | 4 cut(s) | 344, 610, 896, 1036 |
| Hpy166II | GTNNAC | 4 cut(s) | 207, 416, 443, 527 |
| Hpy188I | TCNGA | 9 cut(s) | 72, 170, 262, 355, 508, 665, 988, 1234, 1245 |
| Hpy188III | TCNNGA | 8 cut(s) | 196, 532, 711, 938, 1052, 1125, 1153, 1418 |
| Hpy8I | GTNNAC | 4 cut(s) | 207, 416, 443, 527 |
| HpyAV | CCTTC | 2 cut(s) | 88, 404 |
| HpyCH4IV | ACGT | 1 cut(s) | 1165 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 444, 817, 1438 |
| HpyF3I | CTNAG | 3 cut(s) | 944, 987, 1220 |
| HpySE526I | ACGT | 1 cut(s) | 1165 |
| Ksp22I | TGATCA | 1 cut(s) | 1177 |
| Kzo9I | GATC | 6 cut(s) | 343, 358, 934, 1177, 1240, 1384 |
| LmnI | GCTCC | 2 cut(s) | 1054, 1322 |
| LpnPI | CCDG | 8 cut(s) | 447, 567, 951, 1093, 1110, 1138, 1311, 1487 |
| Lsp1109I | GCAGC | 3 cut(s) | 288, 1044, 1444 |
| LweI | GCATC | 3 cut(s) | 468, 625, 1006 |
| MaeI | CTAG | 7 cut(s) | 543, 591, 711, 753, 1343, 1482, 1497 |
| MaeII | ACGT | 1 cut(s) | 1165 |
| MaeIII | GTNAC | 4 cut(s) | 564, 884, 1070, 1166 |
| MalI | GATC | 6 cut(s) | 345, 360, 936, 1179, 1242, 1386 |
| MboI | GATC | 6 cut(s) | 343, 358, 934, 1177, 1240, 1384 |
| MboII | GAAGA | 6 cut(s) | 74, 731, 822, 878, 1025, 1168 |
| MfeI | CAATTG | 1 cut(s) | 237 |
| MhlI | GDGCHC | 2 cut(s) | 418, 924 |
| MluCI | AATT | 8 cut(s) | 65, 104, 211, 237, 905, 1044, 1269, 1455 |
| MlyI | GAGTC | 3 cut(s) | 725, 1238, 1367 |
| MmeI | TCCRAC | 3 cut(s) | 387, 727, 1212 |
| Mph1103I | ATGCAT | 2 cut(s) | 483, 640 |
| MroXI | GAANNNNTTC | 1 cut(s) | 66 |
| MseI | TTAA | 7 cut(s) | 18, 219, 272, 398, 1047, 1200, 1260 |
| MspA1I | CMGCKG | 1 cut(s) | 740 |
| MspI | CCGG | 3 cut(s) | 434, 554, 1080 |
| MspR9I | CCNGG | 2 cut(s) | 435, 554 |
| MunI | CAATTG | 1 cut(s) | 237 |
| Mva1269I | GAATGC | 1 cut(s) | 318 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 444, 817, 1438 |
| NciI | CCSGG | 2 cut(s) | 435, 554 |
| NdeI | CATATG | 1 cut(s) | 1207 |
| NdeII | GATC | 6 cut(s) | 343, 358, 934, 1177, 1240, 1384 |
| NmuCI | GTSAC | 3 cut(s) | 884, 1070, 1166 |
| NsiI | ATGCAT | 2 cut(s) | 483, 640 |
| NspI | RCATGY | 4 cut(s) | 642, 658, 863, 1451 |
| NspV | TTCGAA | 2 cut(s) | 472, 950 |
| PaeI | GCATGC | 1 cut(s) | 863 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1057 |
| PctI | GAATGC | 1 cut(s) | 318 |
| PdmI | GAANNNNTTC | 1 cut(s) | 66 |
| PfeI | GAWTC | 2 cut(s) | 1130, 1490 |
| PfoI | TCCNGGA | 1 cut(s) | 552 |
| PinAI | ACCGGT | 1 cut(s) | 1079 |
| PkrI | GCNGC | 3 cut(s) | 303, 1059, 1434 |
| PleI | GAGTC | 3 cut(s) | 725, 1237, 1366 |
| PmaCI | CACGTG | 1 cut(s) | 1166 |
| PmlI | CACGTG | 1 cut(s) | 1166 |
| PpsI | GAGTC | 3 cut(s) | 725, 1237, 1366 |
| Ppu21I | YACGTR | 1 cut(s) | 1166 |
| PshBI | ATTAAT | 1 cut(s) | 1047 |
| PsiI | TTATAA | 1 cut(s) | 1540 |
| PspCI | CACGTG | 1 cut(s) | 1166 |
| PspEI | GGTNACC | 1 cut(s) | 884 |
| PspPI | GGNCC | 2 cut(s) | 371, 1064 |
| PstI | CTGCAG | 1 cut(s) | 1470 |
| PvuII | CAGCTG | 1 cut(s) | 740 |
| RsaI | GTAC | 4 cut(s) | 442, 1315, 1392, 1511 |
| RsaNI | GTAC | 4 cut(s) | 441, 1314, 1391, 1510 |
| SaqAI | TTAA | 7 cut(s) | 18, 219, 272, 398, 1047, 1200, 1260 |
| SatI | GCNGC | 3 cut(s) | 302, 1058, 1433 |
| Sau3AI | GATC | 6 cut(s) | 343, 358, 934, 1177, 1240, 1384 |
| Sau96I | GGNCC | 2 cut(s) | 371, 1064 |
| SchI | GAGTC | 3 cut(s) | 725, 1238, 1367 |
| ScrFI | CCNGG | 2 cut(s) | 435, 554 |
| SduI | GDGCHC | 2 cut(s) | 418, 924 |
| SfaNI | GCATC | 3 cut(s) | 468, 625, 1006 |
| SfcI | CTRYAG | 2 cut(s) | 735, 1466 |
| SfuI | TTCGAA | 2 cut(s) | 472, 950 |
| SmiI | ATTTAAAT | 1 cut(s) | 273 |
| SmlI | CTYRAG | 2 cut(s) | 196, 530 |
| SmoI | CTYRAG | 2 cut(s) | 196, 530 |
| SphI | GCATGC | 1 cut(s) | 863 |
| Sse9I | AATT | 8 cut(s) | 65, 104, 211, 237, 905, 1044, 1269, 1455 |
| SspMI | CTAG | 7 cut(s) | 543, 591, 711, 753, 1343, 1482, 1497 |
| StyD4I | CCNGG | 2 cut(s) | 433, 552 |
| StyI | CCWWGG | 1 cut(s) | 806 |
| SwaI | ATTTAAAT | 1 cut(s) | 273 |
| TaiI | ACGT | 1 cut(s) | 1168 |
| TaqI | TCGA | 4 cut(s) | 472, 950, 1084, 1453 |
| TaqII | GACCGA | 1 cut(s) | 1281 |
| TasI | AATT | 8 cut(s) | 65, 104, 211, 237, 905, 1044, 1269, 1455 |
| TatI | WGTACW | 2 cut(s) | 440, 1509 |
| TfiI | GAWTC | 2 cut(s) | 1130, 1490 |
| Tru1I | TTAA | 7 cut(s) | 18, 219, 272, 398, 1047, 1200, 1260 |
| Tru9I | TTAA | 7 cut(s) | 18, 219, 272, 398, 1047, 1200, 1260 |
| TscAI | CASTG | 1 cut(s) | 1408 |
| TseFI | GTSAC | 3 cut(s) | 884, 1070, 1166 |
| TseI | GCWGC | 3 cut(s) | 301, 1057, 1432 |
| Tsp45I | GTSAC | 3 cut(s) | 884, 1070, 1166 |
| TspDTI | ATGAA | 5 cut(s) | 75, 321, 454, 702, 1186 |
| TspGWI | ACGGA | 1 cut(s) | 240 |
| TspRI | CASTG | 1 cut(s) | 1408 |
| VneI | GTGCAC | 1 cut(s) | 414 |
| VspI | ATTAAT | 1 cut(s) | 1047 |
| XapI | RAATTY | 2 cut(s) | 65, 1269 |
| XbaI | TCTAGA | 1 cut(s) | 710 |
| XceI | RCATGY | 4 cut(s) | 642, 658, 863, 1451 |
| XmiI | GTMKAC | 1 cut(s) | 206 |
| XmnI | GAANNNNTTC | 1 cut(s) | 66 |
| XspI | CTAG | 7 cut(s) | 543, 591, 711, 753, 1343, 1482, 1497 |
| Zsp2I | ATGCAT | 2 cut(s) | 483, 640 |