Prupe.6G114200_v2.0.a1

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0003793
Physical Location & Seq
Forward (+)
8239075 .. 8245347
6273 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G114200.2

Sequence Viewer

Length: 2613 bp
ATGGCTATTGCTGGTCTACACAATGTTTCTGTGCTCGAGCCTTCTATCCTTCGAGACTCTCAGTCTCACGCATCTAGACGGATAGGCAATGAAAGAAGGGTAAACACCCGCCCGTCCTCCCTACTACGAATGTGGCGAGAGCTTGAGGATGAGCATGTGGTGAGTCGTGCCCAAGAGAGAATCAGTGAAAGGCTGCTTCAACAAAGAAGTGATAGGTTGATAGATGACATCTCAAGAGCAGATGCTGCTGAAGGCCACAGTAGTGAACACACAGGTGATTTAGACGATGAGAGTGTGGCGGAGAGTGAGTGCAGATTATGGTCTCAAGGTCAAATTGGGTCATCCAATGAACATGAGAACTGTAGCAATTTTAGCAGTGAGCATTCTGATTTTGGGGAGGTTGAAAGGGGGAGGGTGAGGCAAGTTTTCAGGGAATGGATGAATTGTGGTGTGGCTGAGTGTAGTTCAAGTGTTTCTAATATGAGTAACAGTTCAAGGGCAGAATGGCTTGGTGAAACTGAACAGGAGAGGGTCAGAATTGTAAGGGAGTGGGTGCAAATTAACAGCCAGCAGAGAGGTGCTTCTGGTGACAATAGTGGAGAACAGCCTGCTGAAATTGGTAATCAAATTGAACGAGTTCGTGATGGATTGGTTGTTAACCAAACCGAAGGCCGGTCTGAGCTCACGCGAAGGGGCATTCGCAAGTTATGCGGTAGACAGGCTCTGCTGGATATGTTAAAGAAGGCTGAGAGGGAAAGGCAAAGAGAACTTCAAGAATTGTTGGAGCACCAGGCCGTATCACATTTTGCTCACCGCAATCGCATTCAGTCCTTGCTCAGAGGAAGATTCTTACGAAATGGTAGAGTGATTGAGAATGAGAGATCCACTTCCATGGCTGAAAATGAACTAGGCTTATTGAGGCAAAGACACACAGTCTCTGGTCTAAGGGAAGGTTTTTGCTCCAGATTGGATAATACTGCATGTGGTCAAGTAAGCAGCAGCCATTCTGAGACATCTTCAAGTGTGTCTAGTGGTAGTAGAAATGGACATGCTGAAGAAGAGAATTTACAAGAGGTACATGGTTTTTTCGAACAATCTGACGCTAATGAAGAGGCAAGTGATGACAGAGGACATGATAGATGTGGAATGTCAAATGGTAGGGGTGATTTAGGTGGCAACACCATTCTGGATATAAATTCACAAGAATCTAATGTTCATGTGGAAGGTTGGCAGGAAGAAGTTCCAGATAATGTCGTAAGAGACGGGCATTGCTCAACCATTTTTGACATTGTCGAAAGGAGTGTGGGTACTGGTAGTAATATGATTGGGAACTTACAGGCAACCACTGCTGTTGAGCAGCCTCTAGAAACTTTGCAAAATGATGCTGGTGAACACAGTAACATGAGAGAAGTCATTGATGTATCTAATGAATCTGAGCCAAGTGGGGAGGAAAGTGTAATCTGTGAACAATCTGGTGATACATATAATTTACAAGGCAACATGGTTGGGGATGTAAATTTTCAATGGGGTGTAAATTTTCAAGAATTTACTTCTCAGGTACAACAATGGCAGGATCGAGTTTCAGAAAATGAGGAAGGAGACTGGGAAGAGCCTGTTGTTGAGTATAATGATTTGAGAGAAAATGTTGGTCGAATTACAGTTGGAGATCAGCAGGAAACTGCTGGTTATGAATGGTCCCAAGAGTTGTTGGAGGGCGAGGATAGAGAAAACAGTCATCTTGAAGAAGTTAGTGAAGTGTGGCACGAGGAAAGTGGTTTTCAAGAGGCTGTTCACAGTTGGTTAGAAGAGCCATCTGACCAGGATGCTGATCCAGTCAGACAGATCGATACCTTTTATTTTCCTGATGACGATAATGCTCATAGTACAGAGATAAGGGAACTCCTAAGCAGGAGAAGGGTTTCTAATCTTCTTAGTAGTGGTTTCCGGCAGAATCTAGATCGACTTATACAATCATATGTGGAAAGACAAAGCCATGCTACCATTGACTGGGAGCTAGATGATACATCACCTTCTCCTGAATCTGCAGAACAGGATCTAGAGCAGACTGGTGGATATCAAAATGAGGGTCAAGTGGATTCTGTTGAGAGTCCTAGTCCTAGTACTGCACTGCCATCACAGCAAATACCTCCCTCACCACTTTGGGACCAGGAGTCACACCCTGATAATTGGCCACAGCATGACATGCATCAACGTTTTGGAATTGACTGGGAGATAATTAACGATATGAGGATTGACATGGGTAGGCTACAACAGAGGATGAATAACTTGCAAAGGATGTTAGAAGCCTGCATGGATATGCAACTCGAGTTGCAGCGCTCAATAAGACAAGAAGTTTCTGATGCCCTGAATAGATCATCTGGTTCACAAGGTTTGTGTGAAGATGGTCTGCTAGAAGATGGCTCTAAATGGGATCATGTAAGGAAAGGAATTTGCTGTATATGTTGTGATAGAAGTATTGATTCTTTACTGTACAGATGCGGGCACATGTGTGCATGTTCAAAATGTGCTACTGAATTGGTTGAGAGTAGCGGAAAGTGTCCAATGTGTAGAGCACCCGCAGTTGAGGTGATCCGTGCTTATTCTGTACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

871

Amino Acids

98.39

Weight (kDa)

4.67

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 2007
AccI GTMKAC 2 cut(s) 16, 715
AccII CGCG 1 cut(s) 688
AciI CCGC 7 cut(s) 109, 299, 711, 814, 2499, 2550, 2577
AclI AACGTT 1 cut(s) 2212
AclWI GGATC 6 cut(s) 876, 1581, 1823, 2061, 2439, 2584
AcoI YGGCCR 1 cut(s) 2189
AcsI RAATTY 6 cut(s) 1063, 1195, 1516, 1534, 1544, 2448
AcuI CTGAAG 2 cut(s) 270, 1074
AfaI GTAC 7 cut(s) 1077, 1309, 1560, 1885, 2122, 2492, 2607
AfeI AGCGCT 1 cut(s) 2336
AfiI CCNNNNNNNGG 2 cut(s) 672, 2007
AflIII ACRYGT 1 cut(s) 2505
AhdI GACNNNNNGTC 3 cut(s) 61, 932, 2170
AjnI CCWGG 3 cut(s) 789, 1818, 2166
AleI CACNNNNGTG 3 cut(s) 261, 273, 2508
AluBI AGCT 3 cut(s) 142, 682, 2014
AluI AGCT 3 cut(s) 142, 682, 2014
Alw21I GWGCWC 4 cut(s) 36, 684, 789, 2575
Alw26I GTCTC 7 cut(s) 48, 69, 327, 940, 1004, 1254, 1593
AlwI GGATC 6 cut(s) 876, 1581, 1823, 2061, 2439, 2584
AlwNI CAGNNNCTG 3 cut(s) 245, 724, 938
Ama87I CYCGRG 2 cut(s) 35, 2324
Aor51HI AGCGCT 1 cut(s) 2336
AoxI GGCC 4 cut(s) 253, 670, 792, 2189
ApeKI GCWGC 6 cut(s) 193, 245, 996, 999, 1357, 2332
ApoI RAATTY 6 cut(s) 1063, 1195, 1516, 1534, 1544, 2448
ArsI GACNNNNNNTTYG 2 cut(s) 2071, 2103
Asp700I GAANNNNTTC 3 cut(s) 636, 1239, 1918
AspLEI GCGC 1 cut(s) 2337
AspS9I GGNCC 2 cut(s) 1695, 2164
AsuII TTCGAA 1 cut(s) 1089
AvaI CYCGRG 2 cut(s) 35, 2324
AvaII GGWCC 2 cut(s) 1695, 2164
BaeGI GKGCMC 2 cut(s) 172, 2505
BalI TGGCCA 1 cut(s) 2191
BanII GRGCYC 1 cut(s) 684
BarI GAAGNNNNNNTAC 2 cut(s) 1050, 1082
BauI CACGAG 1 cut(s) 1763
Bbv12I GWGCWC 4 cut(s) 36, 684, 789, 2575
BbvI GCAGC 6 cut(s) 180, 232, 1008, 1011, 1369, 2344
BccI CCATC 5 cut(s) 638, 1819, 2140, 2396, 2411
BceAI ACGGC 1 cut(s) 779
BciT130I CCWGG 3 cut(s) 791, 1820, 2168
BcoDI GTCTC 7 cut(s) 48, 69, 327, 940, 1004, 1254, 1593
BfmI CTRYAG 2 cut(s) 361, 2043
BfoI RGCGCY 1 cut(s) 2338
BisI GCNGC 6 cut(s) 194, 246, 997, 1000, 1358, 2333
BlsI GCNGC 6 cut(s) 195, 247, 998, 1001, 1359, 2334
BmcAI AGTACT 1 cut(s) 2122
Bme1390I CCNGG 3 cut(s) 791, 1820, 2168
Bme18I GGWCC 2 cut(s) 1695, 2164
BmeRI GACNNNNNGTC 3 cut(s) 61, 932, 2170
BmeT110I CYCGRG 2 cut(s) 35, 2324
BmgT120I GGNCC 2 cut(s) 1695, 2164
BmiI GGNNCC 2 cut(s) 1697, 2165
BmrFI CCNGG 3 cut(s) 791, 1820, 2168
BmrI ACTGGG 3 cut(s) 1612, 2017, 2236
BmsI GCATC 7 cut(s) 80, 232, 1372, 1813, 2215, 2350, 2486
BmuI ACTGGG 3 cut(s) 1612, 2017, 2236
BpmI CTGGAG 1 cut(s) 946
Bpu10I CCTNAGC 1 cut(s) 1904
Bpu14I TTCGAA 1 cut(s) 1089
BpuEI CTTGAG 3 cut(s) 164, 217, 309
Bsa29I ATCGAT 1 cut(s) 1845
BsaBI GATNNNNATC 1 cut(s) 1827
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 891
BsaXI ACNNNNNCTCC 4 cut(s) 293, 323, 1291, 1321
Bsc4I CCNNNNNNNGG 2 cut(s) 672, 2007
Bse118I RCCGGY 1 cut(s) 672
Bse1I ACTGG 6 cut(s) 1315, 1607, 1832, 2012, 2071, 2231
Bse3DI GCAATG 2 cut(s) 94, 1267
Bse8I GATNNNNATC 1 cut(s) 1827
BseBI CCWGG 3 cut(s) 791, 1820, 2168
BseCI ATCGAT 1 cut(s) 1845
BseDI CCNNGG 1 cut(s) 891
BseGI GGATG 7 cut(s) 154, 341, 444, 1516, 1828, 2283, 2301
BseJI GATNNNNATC 1 cut(s) 1827
BseLI CCNNNNNNNGG 2 cut(s) 672, 2007
BseMI GCAATG 2 cut(s) 94, 1267
BseMII CTCAG 8 cut(s) 74, 447, 669, 738, 850, 999, 1425, 1568
BseNI ACTGG 6 cut(s) 1315, 1607, 1832, 2012, 2071, 2231
BseSI GKGCMC 2 cut(s) 172, 2505
BseXI GCAGC 6 cut(s) 180, 232, 1008, 1011, 1369, 2344
BsgI GTGCAG 2 cut(s) 331, 2109
Bsh1236I CGCG 1 cut(s) 688
BshFI GGCC 4 cut(s) 255, 672, 794, 2191
BshVI ATCGAT 1 cut(s) 1845
BsiHKAI GWGCWC 4 cut(s) 36, 684, 789, 2575
BsiHKCI CYCGRG 2 cut(s) 35, 2324
BsiSI CCGG 2 cut(s) 673, 1945
BslFI GGGAC 2 cut(s) 1681, 2177
BslI CCNNNNNNNGG 2 cut(s) 672, 2007
BsmAI GTCTC 7 cut(s) 48, 69, 327, 940, 1004, 1254, 1593
BsmBI CGTCTC 1 cut(s) 1254
BsmFI GGGAC 2 cut(s) 1681, 2177
BsmI GAATGC 3 cut(s) 382, 696, 822
BsnI GGCC 4 cut(s) 255, 672, 794, 2191
Bso31I GGTCTC 1 cut(s) 327
BsoBI CYCGRG 2 cut(s) 35, 2324
Bsp119I TTCGAA 1 cut(s) 1089
Bsp1286I GDGCHC 6 cut(s) 36, 172, 684, 789, 2505, 2575
Bsp1407I TGTACA 1 cut(s) 2490
Bsp19I CCATGG 1 cut(s) 891
BspACI CCGC 7 cut(s) 109, 299, 711, 814, 2499, 2550, 2577
BspANI GGCC 4 cut(s) 255, 672, 794, 2191
BspCNI CTCAG 8 cut(s) 73, 448, 670, 739, 849, 1000, 1426, 1567
BspDI ATCGAT 1 cut(s) 1845
BspFNI CGCG 1 cut(s) 688
BspLI GGNNCC 2 cut(s) 1697, 2165
BspMAI CTGCAG 1 cut(s) 2047
BspPI GGATC 6 cut(s) 876, 1581, 1823, 2061, 2439, 2584
BspQI GCTCTTC 2 cut(s) 1602, 1800
BspT104I TTCGAA 1 cut(s) 1089
BspTNI GGTCTC 1 cut(s) 327
BsrDI GCAATG 2 cut(s) 94, 1267
BsrFI RCCGGY 1 cut(s) 672
BsrGI TGTACA 1 cut(s) 2490
BsrI ACTGG 6 cut(s) 1315, 1607, 1832, 2012, 2071, 2231
BssAI RCCGGY 1 cut(s) 672
BssECI CCNNGG 1 cut(s) 891
BssSI CACGAG 1 cut(s) 1763
BssT1I CCWWGG 1 cut(s) 891
Bst2BI CACGAG 1 cut(s) 1763
Bst2UI CCWGG 3 cut(s) 791, 1820, 2168
Bst6I CTCTTC 4 cut(s) 1053, 1104, 1602, 1800
BstAPI GCANNNNNTGC 4 cut(s) 245, 708, 1346, 2203
BstAUI TGTACA 1 cut(s) 2490
BstBI TTCGAA 1 cut(s) 1089
BstC8I GCNNGC 4 cut(s) 569, 609, 2308, 2501
BstDSI CCRYGG 1 cut(s) 891
BstF5I GGATG 7 cut(s) 154, 341, 444, 1516, 1828, 2283, 2301
BstFNI CGCG 1 cut(s) 688
BstH2I RGCGCY 1 cut(s) 2338
BstHHI GCGC 1 cut(s) 2337
BstMAI GTCTC 7 cut(s) 48, 69, 327, 940, 1004, 1254, 1593
BstMWI GCNNNNNNNGC 6 cut(s) 245, 372, 708, 1346, 2137, 2203
BstNI CCWGG 3 cut(s) 791, 1820, 2168
BstNSI RCATGY 6 cut(s) 158, 984, 1052, 2206, 2509, 2517
BstSCI CCNGG 3 cut(s) 789, 1818, 2166
BstSFI CTRYAG 2 cut(s) 361, 2043
BstSLI GKGCMC 2 cut(s) 172, 2505
BstUI CGCG 1 cut(s) 688
BstV1I GCAGC 6 cut(s) 180, 232, 1008, 1011, 1369, 2344
BstX2I RGATCY 2 cut(s) 881, 2053
BstXI CCANNNNNNTGG 1 cut(s) 892
BstYI RGATCY 2 cut(s) 881, 2053
Bsu15I ATCGAT 1 cut(s) 1845
BsuRI GGCC 4 cut(s) 255, 672, 794, 2191
BsuTUI ATCGAT 1 cut(s) 1845
BtgI CCRYGG 1 cut(s) 891
BtsCI GGATG 7 cut(s) 154, 341, 444, 1516, 1828, 2283, 2301
BtsI GCAGTG 3 cut(s) 382, 1344, 2126
BtsIMutI CAGTG 4 cut(s) 190, 382, 1344, 2126
Cac8I GCNNGC 4 cut(s) 569, 609, 2308, 2501
CaiI CAGNNNCTG 3 cut(s) 245, 724, 938
CfoI GCGC 1 cut(s) 2337
Cfr10I RCCGGY 1 cut(s) 672
Cfr13I GGNCC 2 cut(s) 1695, 2164
ClaI ATCGAT 1 cut(s) 1845
CseI GACGC 1 cut(s) 1109
Csp6I GTAC 7 cut(s) 1076, 1308, 1559, 1884, 2121, 2491, 2606
CspCI CAANNNNNGTGG 2 cut(s) 1333, 1368
CviQI GTAC 7 cut(s) 1076, 1308, 1559, 1884, 2121, 2491, 2606
DriI GACNNNNNGTC 3 cut(s) 61, 932, 2170
EaeI YGGCCR 1 cut(s) 2189
Eam1104I CTCTTC 4 cut(s) 1053, 1104, 1602, 1800
Eam1105I GACNNNNNGTC 3 cut(s) 61, 932, 2170
EarI CTCTTC 4 cut(s) 1053, 1104, 1602, 1800
EciI GGCGGA 1 cut(s) 314
Ecl136II GAGCTC 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 891
Eco24I GRGCYC 1 cut(s) 684
Eco31I GGTCTC 1 cut(s) 327
Eco32I GATATC 1 cut(s) 2075
Eco47I GGWCC 2 cut(s) 1695, 2164
Eco47III AGCGCT 1 cut(s) 2336
Eco53kI GAGCTC 1 cut(s) 682
Eco57I CTGAAG 2 cut(s) 270, 1074
Eco88I CYCGRG 2 cut(s) 35, 2324
EcoICRI GAGCTC 1 cut(s) 682
EcoRII CCWGG 3 cut(s) 789, 1818, 2166
EcoRV GATATC 1 cut(s) 2075
EcoT14I CCWWGG 1 cut(s) 891
EcoT22I ATGCAT 1 cut(s) 2208
EcoT38I GRGCYC 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 891
Esp3I CGTCTC 1 cut(s) 1254
FaqI GGGAC 2 cut(s) 1681, 2177
FauI CCCGC 3 cut(s) 116, 2492, 2584
FauNDI CATATG 1 cut(s) 1975
FblI GTMKAC 2 cut(s) 16, 715
Fnu4HI GCNGC 6 cut(s) 194, 246, 997, 1000, 1358, 2333
FokI GGATG 7 cut(s) 161, 328, 451, 1523, 1835, 2290, 2308
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 6 cut(s) 194, 246, 997, 1000, 1358, 2333
GlaI GCGC 1 cut(s) 2336
GluI GCNGC 6 cut(s) 194, 246, 997, 1000, 1358, 2333
GsuI CTGGAG 1 cut(s) 946
HaeII RGCGCY 1 cut(s) 2338
HaeIII GGCC 4 cut(s) 255, 672, 794, 2191
HapII CCGG 2 cut(s) 673, 1945
HgaI GACGC 1 cut(s) 1109
HhaI GCGC 1 cut(s) 2337
Hin6I GCGC 1 cut(s) 2335
HinP1I GCGC 1 cut(s) 2335
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HpaI GTTAAC 1 cut(s) 658
HpaII CCGG 2 cut(s) 673, 1945
Hpy166II GTNNAC 9 cut(s) 17, 103, 266, 658, 716, 1391, 1466, 1792, 2384
Hpy8I GTNNAC 9 cut(s) 17, 103, 266, 658, 716, 1391, 1466, 1792, 2384
HpyCH4IV ACGT 1 cut(s) 2212
HpyF10VI GCNNNNNNNGC 6 cut(s) 245, 372, 708, 1346, 2137, 2203
HpySE526I ACGT 1 cut(s) 2212
HspAI GCGC 1 cut(s) 2335
KspAI GTTAAC 1 cut(s) 658
LguI GCTCTTC 2 cut(s) 1602, 1800
LmnI GCTCC 3 cut(s) 784, 965, 2011
Lsp1109I GCAGC 6 cut(s) 180, 232, 1008, 1011, 1369, 2344
LweI GCATC 7 cut(s) 80, 232, 1372, 1813, 2215, 2350, 2486
MaeII ACGT 1 cut(s) 2212
MaeIII GTNAC 4 cut(s) 485, 587, 1397, 2172
MflI RGATCY 2 cut(s) 881, 2053
MhlI GDGCHC 6 cut(s) 36, 172, 684, 789, 2505, 2575
MlsI TGGCCA 1 cut(s) 2191
MluNI TGGCCA 1 cut(s) 2191
MlyI GAGTC 4 cut(s) 50, 172, 2116, 2180
MmeI TCCRAC 3 cut(s) 762, 1642, 1689
Mox20I TGGCCA 1 cut(s) 2191
Mph1103I ATGCAT 1 cut(s) 2208
MroXI GAANNNNTTC 3 cut(s) 636, 1239, 1918
MscI TGGCCA 1 cut(s) 2191
MseI TTAA 4 cut(s) 561, 657, 737, 2238
MslI CAYNNNNRTG 5 cut(s) 261, 273, 890, 2315, 2508
Msp20I TGGCCA 1 cut(s) 2191
MspI CCGG 2 cut(s) 673, 1945
MspR9I CCNGG 3 cut(s) 791, 1820, 2168
Mva1269I GAATGC 3 cut(s) 382, 696, 822
MvaI CCWGG 3 cut(s) 791, 1820, 2168
MvnI CGCG 1 cut(s) 688
MwoI GCNNNNNNNGC 6 cut(s) 245, 372, 708, 1346, 2137, 2203
NcoI CCATGG 1 cut(s) 891
NdeI CATATG 1 cut(s) 1975
NlaIV GGNNCC 2 cut(s) 1697, 2165
NmuCI GTSAC 2 cut(s) 587, 2172
NsiI ATGCAT 1 cut(s) 2208
NspI RCATGY 6 cut(s) 158, 984, 1052, 2206, 2509, 2517
NspV TTCGAA 1 cut(s) 1089
OliI CACNNNNGTG 3 cut(s) 261, 273, 2508
PaeR7I CTCGAG 2 cut(s) 35, 2324
PciI ACATGT 1 cut(s) 2505
PciSI GCTCTTC 2 cut(s) 1602, 1800
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PctI GAATGC 3 cut(s) 382, 696, 822
PdmI GAANNNNTTC 3 cut(s) 636, 1239, 1918
PfeI GAWTC 8 cut(s) 180, 846, 1205, 1430, 1951, 2039, 2096, 2480
PflFI GACNNNGTC 1 cut(s) 1289
PflMI CCANNNNNTGG 1 cut(s) 2007
PkrI GCNGC 6 cut(s) 195, 247, 998, 1001, 1359, 2334
PleI GAGTC 4 cut(s) 50, 171, 2115, 2179
PpsI GAGTC 4 cut(s) 50, 171, 2115, 2179
PscI ACATGT 1 cut(s) 2505
Psp124BI GAGCTC 1 cut(s) 684
Psp1406I AACGTT 1 cut(s) 2212
Psp6I CCWGG 3 cut(s) 789, 1818, 2166
PspGI CCWGG 3 cut(s) 789, 1818, 2166
PspN4I GGNNCC 2 cut(s) 1697, 2165
PspPI GGNCC 2 cut(s) 1695, 2164
PspXI VCTCGAGB 2 cut(s) 35, 2324
PstI CTGCAG 1 cut(s) 2047
PstNI CAGNNNCTG 3 cut(s) 245, 724, 938
PsuI RGATCY 2 cut(s) 881, 2053
PsyI GACNNNGTC 1 cut(s) 1289
RsaI GTAC 7 cut(s) 1077, 1309, 1560, 1885, 2122, 2492, 2607
RsaNI GTAC 7 cut(s) 1076, 1308, 1559, 1884, 2121, 2491, 2606
RseI CAYNNNNRTG 5 cut(s) 261, 273, 890, 2315, 2508
SacI GAGCTC 1 cut(s) 684
SapI GCTCTTC 2 cut(s) 1602, 1800
SaqAI TTAA 4 cut(s) 561, 657, 737, 2238
SatI GCNGC 6 cut(s) 194, 246, 997, 1000, 1358, 2333
Sau96I GGNCC 2 cut(s) 1695, 2164
ScaI AGTACT 1 cut(s) 2122
SchI GAGTC 4 cut(s) 50, 172, 2116, 2180
ScrFI CCNGG 3 cut(s) 791, 1820, 2168
SduI GDGCHC 6 cut(s) 36, 172, 684, 789, 2505, 2575
SfaNI GCATC 7 cut(s) 80, 232, 1372, 1813, 2215, 2350, 2486
SfcI CTRYAG 2 cut(s) 361, 2043
Sfr274I CTCGAG 2 cut(s) 35, 2324
SfuI TTCGAA 1 cut(s) 1089
SinI GGWCC 2 cut(s) 1695, 2164
SlaI CTCGAG 2 cut(s) 35, 2324
SmiMI CAYNNNNRTG 5 cut(s) 261, 273, 890, 2315, 2508
SmlI CTYRAG 5 cut(s) 35, 143, 232, 324, 2324
SmoI CTYRAG 5 cut(s) 35, 143, 232, 324, 2324
SsiI CCGC 7 cut(s) 109, 299, 711, 814, 2499, 2550, 2577
SstI GAGCTC 1 cut(s) 684
StyD4I CCNGG 3 cut(s) 789, 1818, 2166
StyI CCWWGG 1 cut(s) 891
TaiI ACGT 1 cut(s) 2215
TaqI TCGA 9 cut(s) 36, 52, 1089, 1293, 1576, 1651, 1845, 1960, 2325
TatI WGTACW 4 cut(s) 1883, 2120, 2490, 2605
TfiI GAWTC 8 cut(s) 180, 846, 1205, 1430, 1951, 2039, 2096, 2480
Tru1I TTAA 4 cut(s) 561, 657, 737, 2238
Tru9I TTAA 4 cut(s) 561, 657, 737, 2238
TscAI CASTG 4 cut(s) 190, 382, 1351, 2133
TseFI GTSAC 2 cut(s) 587, 2172
TseI GCWGC 6 cut(s) 193, 245, 996, 999, 1357, 2332
Tsp45I GTSAC 2 cut(s) 587, 2172
TspDTI ATGAA 9 cut(s) 105, 363, 455, 918, 1122, 1205, 1443, 1704, 2294
TspGWI ACGGA 2 cut(s) 94, 2582
TspRI CASTG 4 cut(s) 190, 382, 1351, 2133
Tth111I GACNNNGTC 1 cut(s) 1289
Van91I CCANNNNNTGG 1 cut(s) 2007
VpaK11BI GGWCC 2 cut(s) 1695, 2164
XapI RAATTY 6 cut(s) 1063, 1195, 1516, 1534, 1544, 2448
XbaI TCTAGA 4 cut(s) 74, 1363, 1954, 2056
XceI RCATGY 6 cut(s) 158, 984, 1052, 2206, 2509, 2517
XhoI CTCGAG 2 cut(s) 35, 2324
XmiI GTMKAC 2 cut(s) 16, 715
XmnI GAANNNNTTC 3 cut(s) 636, 1239, 1918
ZrmI AGTACT 1 cut(s) 2122
Zsp2I ATGCAT 1 cut(s) 2208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.