Rorug05G0299400

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003793
Physical Location & Seq
Forward (+)
34662137 .. 34663894
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0299400.1

Sequence Viewer

Length: 567 bp
ATGTATCCCACACATTCATATGGAAAGTCCGCTTATCTGAGCTCAAGAACAGCCGAAATTACTCTGACACTTCCACCGTCGGTGGTCTTAAATGGCAGATTATTGCATGTCCAAAGTTATGTGATGAAAATTCCTGTGGAGCAGTTATCAATGTACTTGGCTGTTGCAGATGCTTCAGGATTGCCAGTTGGGTGGAGTAGACTTGCCCACTCTAGCTTTACCTTTGTTAATCAACTTGACAGCAAGAAGTCAATAGCAAAATCTACAAAGGGCACTGTACTATTCAATGAAAATCAGTGTGAGTTGGGCTTCAAGTCTTTCGTGCCTGCTAGTGAGCTTTATGACAGGATTGCTGGTTATCTCATGAGCAACATGTGTATTATAAAAGCAAAGGTGGCTACCTTACAAGATACTCCAGCTTCTGAACCATTTTGCACTACGGTTGCAACCCCAATCGTTAGAATTGAAGATCCAGGAACTGAAATTGCCTCAAAGAAAGAATCCAACAGGGAGGAGCCTTCAAATGTGAATTCTGGGGCAAGCTCAAGTCTTTTCAGCAGCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

188

Amino Acids

20.41

Weight (kDa)

7.7

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 47 - 132 1.3e-13 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
AccI GTMKAC 1 cut(s) 199
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 464
AcsI RAATTY 2 cut(s) 129, 529
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 2 cut(s) 155, 279
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 4 cut(s) 286, 313, 467, 522
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 5 cut(s) 42, 216, 337, 419, 543
AluI AGCT 5 cut(s) 42, 216, 337, 419, 543
Alw21I GWGCWC 1 cut(s) 44
AlwI GGATC 1 cut(s) 464
AlwNI CAGNNNCTG 2 cut(s) 422, 479
ApeKI GCWGC 1 cut(s) 558
ApoI RAATTY 2 cut(s) 129, 529
BaeGI GKGCMC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 474
BciVI GTATCC 1 cut(s) 15
BfaI CTAG 2 cut(s) 213, 330
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 1 cut(s) 559
BlsI GCNGC 1 cut(s) 560
Bme1390I CCNGG 1 cut(s) 474
BmiI GGNNCC 1 cut(s) 516
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 399
BpuEI CTTGAG 2 cut(s) 28, 529
Bse1I ACTGG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 44, 275
Bsp143I GATC 1 cut(s) 469
BspACI CCGC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 30
BspHI TCATGA 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 516
BspPI GGATC 1 cut(s) 464
BsrI ACTGG 1 cut(s) 185
BssMI GATC 1 cut(s) 469
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 3 cut(s) 78, 277, 442
BstC8I GCNNGC 2 cut(s) 327, 541
BstDEI CTNAG 1 cut(s) 38
BstKTI GATC 1 cut(s) 472
BstMBI GATC 1 cut(s) 469
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 1 cut(s) 474
BstNSI RCATGY 2 cut(s) 110, 376
BstSCI CCNGG 1 cut(s) 472
BstSLI GKGCMC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 469
BstXI CCANNNNNNTGG 1 cut(s) 192
BstYI RGATCY 1 cut(s) 469
BsuI GTATCC 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 273, 302
Cac8I GCNNGC 2 cut(s) 327, 541
CaiI CAGNNNCTG 2 cut(s) 422, 479
CciI TCATGA 1 cut(s) 363
Csp6I GTAC 2 cut(s) 154, 278
CviAII CATG 3 cut(s) 107, 364, 373
CviQI GTAC 2 cut(s) 154, 278
DdeI CTNAG 1 cut(s) 38
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
Ecl136II GAGCTC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 529
EcoRII CCWGG 1 cut(s) 472
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 3 cut(s) 110, 367, 376
FaiI YATR 8 cut(s) 19, 21, 108, 120, 342, 365, 374, 383
FatI CATG 3 cut(s) 106, 363, 372
FauNDI CATATG 1 cut(s) 19
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 559
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 559
FspBI CTAG 2 cut(s) 213, 330
GluI GCNGC 1 cut(s) 559
GsuI CTGGAG 1 cut(s) 399
Hin1II CATG 3 cut(s) 110, 367, 376
HinfI GANTC 1 cut(s) 500
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 3 cut(s) 39, 66, 424
Hpy188III TCNNGA 3 cut(s) 45, 177, 364
Hpy8I GTNNAC 1 cut(s) 200
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 528
HpyCH4III ACNGT 3 cut(s) 78, 277, 442
HpyCH4V TGCA 4 cut(s) 106, 167, 435, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 38
Hsp92II CATG 3 cut(s) 110, 367, 376
Kzo9I GATC 1 cut(s) 469
LmnI GCTCC 2 cut(s) 139, 514
LweI GCATC 1 cut(s) 160
MaeI CTAG 2 cut(s) 213, 330
MalI GATC 1 cut(s) 471
MboI GATC 1 cut(s) 469
MboII GAAGA 1 cut(s) 479
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 44, 275
MluCI AATT 5 cut(s) 57, 129, 462, 483, 529
MmeI TCCRAC 1 cut(s) 528
MnlI CCTC 2 cut(s) 499, 505
MseI TTAA 2 cut(s) 89, 228
MslI CAYNNNNRTG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeI CATATG 1 cut(s) 19
NdeII GATC 1 cut(s) 469
NlaIII CATG 3 cut(s) 110, 367, 376
NlaIV GGNNCC 1 cut(s) 516
NspI RCATGY 2 cut(s) 110, 376
PagI TCATGA 1 cut(s) 363
PciI ACATGT 1 cut(s) 372
PfeI GAWTC 1 cut(s) 500
PfoI TCCNGGA 1 cut(s) 472
PkrI GCNGC 1 cut(s) 560
PscI ACATGT 1 cut(s) 372
PsiI TTATAA 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 516
PstNI CAGNNNCTG 2 cut(s) 422, 479
PsuI RGATCY 1 cut(s) 469
RsaI GTAC 2 cut(s) 155, 279
RsaNI GTAC 2 cut(s) 154, 278
RseI CAYNNNNRTG 1 cut(s) 18
SacI GAGCTC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 89, 228
SatI GCNGC 1 cut(s) 559
Sau3AI GATC 1 cut(s) 469
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 2 cut(s) 44, 275
SetI ASST 8 cut(s) 44, 218, 224, 339, 396, 404, 421, 545
SfaNI GCATC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 43, 544
SmoI CTYRAG 2 cut(s) 43, 544
Sse9I AATT 5 cut(s) 57, 129, 462, 483, 529
SsiI CCGC 1 cut(s) 30
SspMI CTAG 2 cut(s) 213, 330
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 472
TaaI ACNGT 3 cut(s) 78, 277, 442
TasI AATT 5 cut(s) 57, 129, 462, 483, 529
TatI WGTACW 2 cut(s) 153, 277
TfiI GAWTC 1 cut(s) 500
Tru1I TTAA 2 cut(s) 89, 228
Tru9I TTAA 2 cut(s) 89, 228
TscAI CASTG 2 cut(s) 280, 302
TseI GCWGC 1 cut(s) 558
TspDTI ATGAA 3 cut(s) 6, 140, 303
TspRI CASTG 2 cut(s) 280, 302
XapI RAATTY 2 cut(s) 129, 529
XceI RCATGY 2 cut(s) 110, 376
XmiI GTMKAC 1 cut(s) 199
XspI CTAG 2 cut(s) 213, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.