Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003793

Physical Location & Seq

Genomic Coordinates Forward (+)

34663961 .. 34664511

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0299500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCTTCTAATGATGACCCGGCTGGCCCTTCGGTAGTTGAGAAACTTGGTGGAGTCTTCACCACCCCATCACTTACAGAATTCAGGGGTTTAGGGCTCATAGATCAACATTTTGTTCCACTGCTTGAGGAAGTCTGTTCATGGCACCCTTCATTGATTGAATGCCAGAAGAACAGAACTCGTACATTTAGTGAATGTGCATTCAAATCCTTGGGTAAGCTACTGCATATTCTAAAGACTACGAGGAAGAATTTTATCCAGATGTCAGGAAAAGTTATAAGATTGAGGGAACATGTGGATGAGTTGGAGGTTGAATTAAAGAGACACAGGACTGTAATAATTGCTGCTGAGGTGGATCTTGAGATAAAAAGAAGAGACTTGGCAGAGACAGACGAGTTAGATTTGAACTGTGAGCTGGGTTATGGAAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

144

Amino Acids

16.39

Weight (kDa)

6.22

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27950 AT2G27950 AT2G27950
fragaria_vesca	FvH4_3g30470 FvH4_3g30470 FvH4_3g30470 FvH4_3g30470 FvH4_3g30470 FvH4_3g30470 FvH4_3g30470
malus_domestica	MD03G1127700.v1.1 MD11G1149900.v1.1
prunus_persica	Prupe.6G114200_v2.0.a1 Prupe.6G114200_v2.0.a1 Prupe.6G114200_v2.0.a1
pyrus_communis	pycom11g12270
rosa_chinensis	RchiOBHm_Chr5g0056421
rosa_laevigata	RLG00000035097
rosa_multiflora	Rmu_sc0000317.1_g000039
rosa_roxburghii	Rroxscaffold_1G00023890
rosa_rugosa	Rorug05G0299300 Rorug05G0299400 Rorug05G0299500 Rorug05G0299600 Rorug05G0299700 Rorug05G0299700 Rorug05G0299800 Rorug05G0299900
rosa_samantha	Rh5AG370300 Rh5BG381500 Rh5BG381700 Rh5CG404500 Rh5DG394500
rosa_wichuraiana	Rw5G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	144
AclWI	GGATC	1 cut(s)	363
AcsI	RAATTY	2 cut(s)	80, 250
AfaI	GTAC	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	4 cut(s)	161, 205, 314, 406
AluBI	AGCT	2 cut(s)	220, 415
AluI	AGCT	2 cut(s)	220, 415
Alw26I	GTCTC	3 cut(s)	316, 369, 380
AlwI	GGATC	1 cut(s)	363
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	2 cut(s)	80, 250
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	49
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	3 cut(s)	316, 369, 380
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	146, 380
BpuMI	CCSGG	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	331
BseYI	CCCAGC	1 cut(s)	415
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	20
BsmAI	GTCTC	3 cut(s)	316, 369, 380
BsmI	GAATGC	2 cut(s)	167, 200
BsnI	GGCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	103, 355
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	103, 355
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	334, 410
Bst6I	CTCTTC	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	2 cut(s)	106, 358
BstMAI	GTCTC	3 cut(s)	316, 369, 380
BstMBI	GATC	2 cut(s)	103, 355
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	2 cut(s)	141, 293
CviJI	RGCY	6 cut(s)	5, 23, 27, 97, 220, 415
CviKI_1	RGCY	6 cut(s)	5, 23, 27, 97, 220, 415
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	2 cut(s)	105, 357
DpnII	GATC	2 cut(s)	103, 355
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	99
EcoRI	GAATTC	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	2 cut(s)	144, 296
FaiI	YATR	6 cut(s)	101, 142, 228, 278, 294, 423
FatI	CATG	2 cut(s)	140, 292
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	345
GsaI	CCCAGC	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	2 cut(s)	144, 296
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	259, 267, 359
HpyAV	CCTTC	3 cut(s)	39, 159, 420
HpyCH4III	ACNGT	2 cut(s)	334, 410
HpyCH4V	TGCA	2 cut(s)	200, 226
HpyF3I	CTNAG	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	144, 296
Kzo9I	GATC	2 cut(s)	103, 355
LpnPI	CCDG	8 cut(s)	9, 33, 70, 179, 252, 272, 313, 401
Lsp1109I	GCAGC	1 cut(s)	331
MalI	GATC	2 cut(s)	105, 357
MboI	GATC	2 cut(s)	103, 355
MboII	GAAGA	4 cut(s)	49, 181, 259, 384
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	4 cut(s)	80, 250, 314, 339
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	5 cut(s)	121, 237, 279, 301, 343
MseI	TTAA	1 cut(s)	317
MslI	CAYNNNNRTG	1 cut(s)	297
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	20
Mva1269I	GAATGC	2 cut(s)	167, 200
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	2 cut(s)	103, 355
NlaIII	CATG	2 cut(s)	144, 296
NlaIV	GGNNCC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	296
PciI	ACATGT	1 cut(s)	292
PctI	GAATGC	2 cut(s)	167, 200
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PscI	ACATGT	1 cut(s)	292
PsiI	TTATAA	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	103, 355
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	4 cut(s)	222, 312, 354, 417
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	125, 359
SmoI	CTYRAG	2 cut(s)	125, 359
Sse9I	AATT	4 cut(s)	80, 250, 314, 339
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	334, 410
TasI	AATT	4 cut(s)	80, 250, 314, 339
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	129, 141
TspRI	CASTG	1 cut(s)	126
XapI	RAATTY	2 cut(s)	80, 250
XceI	RCATGY	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.