RchiOBHm_Chr5g0056421

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003793
Physical Location & Seq
Reverse (-)
60069787 .. 60076097
6311 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33332

Sequence Viewer

Length: 2490 bp
ATGGCTATTGCTGGTCTACAAAATGTTTCTGTGCTCGATTCTTCTTTCCTTAGAAGCTCTCAATCTGGTGCATCTAGAAGGGTGGACAATGAAGGGAGGGCACACTCCCGGGCTTCCTCTCTGCTACAAATGTGGCGAGAGCTTGAGGATGAGCATATGGTGAGTCGTCCCCTCGAGAGAGTTGGTGAAAGGTTGTTCCAACAAAGGAGTGATGGAGTTGGTAGCGAGAATACAGGTGACCTGGATGATGCAAGTGTGGCTGAGAGTGAGTGCAGAACATGGTCCCAAGGTCAAATTGGCTCATCCCCTGAACACGATGAATATAGCAATTTTAGCAGTGAGCACTCTTCTGATTTTGGGGACGGTGAAAGGGGGAGGGTGAGACAAATTTTTCAGGAATGGATGAACTGTGGTGCGAGTGAATGTGCATCAAATGTTTCTCGTATGAATAACAGTTCAAGGGCAGAGTTGCTTGGTGAAACTGAACAGGAGAGAGTGCGAATTATAAGGGAGTGGGTACGAATGAACAGCCAGCAAAGAGTTGCTTCTGGTGACAATGGAGAAGAACAACCTGCTGAGTTTGGTAATCAAATTGCACGAGTTCGTGATGGATTGGTTGTTAACCAAAGTGGAGGCCAGTCTGAGCATAACCGGAGGGGAATTCGTAAATTATGTGGGAGACAAGCTCTACTGGATATGTTAAAGAAGGCTGAGAGGGAAAGGCAAATAGAACTTCAAGTCTTGTCGGAGCACCAGCCCGTAACACGCTTTGCTCACCGCAACCGCATTCAGTCATTGCTTCGAGGAAGATTTTTACGAAATGGTAGAGCCATTGAGAACGAGAGACCCATTTCGATGGCTGAAACTGAATTGGGCTTATTGAGGCAAAGACATACAGTCTCTGGTCTGAGGGATGGTTTTGACTCCAAATTGGATAGTCCTGTTTGTGGTCAAGTAGGCAGCTGCCATTCTGAGTCATCTTCAAGCAATTCTAATGGTATCAGAAGTGGCCATACTCAACCGAACAATTCACATGAAGTCGTTAGTGGTTCTTTTGAGCAGTCTGAGGCTAATGATGTTGCAAGTAATGACCGAGGACACAATAGTTGTGGAACATCAGCTGCTAGGGCTGATTTAGGTGGAAACACCATTCAGGATATAGATTCACATGAATCTAATGCTCCCATAGAACATGGGCAAGAAGAGATTCCTGATAATGTTGTAAGTGGCTGGCAATGCTCATCCTCTATTGAGATTGTTGAAAGTAGAGATGGTGCTTGTCAAAACATGATTGGGAACTTACTTACAACCACTGCTGTTGAGCAGTCCCAAGAAACTTTGCACAATGATGCTAATGACCACAGTTACATTCAAGGAGCCAGTGATTTATCTAATGAGCAATCTGAGCTTGATGGGGATGAAAGTGTCATCCACGAACTCAGTCATGCAGATGGCAATATGCTTGAGGATGTAAATTTTCAAGAGTCCAATTCACAGCCACACCAGGTGCAAGCTGATGAGTATAATAGTTTGATAGAAAATGTCGTGGAACATACAGGTGAAGATCAGCAGGAAACTGCTGGTTATGAATGGTCCCAGGAGTTGGTAGAGAACGAAGATAGAGAAGATGATCAACTCCAAGAAGTCCCTGAAGTGTGGCACGATGAAAGTGGTTTTCAAGAGGCTGTTCAAAGTTGGTTAGAAGGGCCATCCAGCCAGGATTCCGATTCAGTCAGGCGGGCTGATACCTTTTACTTTCCTGATGATGAAAATGCTCATAATACAGAGCTAAGGGAACTTCTAAGCAGGAGAAGGGTCTCTAATCTTCTGAGTAGTGGTTTCCGTCAGAACCTTGATCAACTCATACAGTCATATGTGGAAAGGCAAGGTCATGCCGCCATTGACTGGGACGAAGCATCAGCTTATCCTGAATTGACTGAAGATATGGAGCAGACGTATCAGAGTGAAGTTCAAGTGAATGCTGTTGAGAGTCCTCACCTTGCTCTACCACCGCAGCCAATACCTTCCTCTCCGTTGTGGCACCAGGAGTCACCCCATGATAATTGGCCACGACATGACATGCATCAGCGCTTTGGAATTGACTGGGAGATGGTGAATGATATGAGGATTGACATGGCTAGGCTGCAACAGAGGATGAACAACTTGCAAAGGATGTTGGAGGCCTGCATGGATATGCAACTTGAGTTGCAACGATCGATAAGACAAGAAGTTTCTGATGCCTTGAATCGGTCAGCCGGTTCACAAGGGGTGTGTGAAGATGGTCTCCTAGATGATGGGTCTAAATGGGATAATGTAAGGAAAGGAATTTGCTGTATATGTTGTGTTAGCAGTATTGATTCTTTACTATACAGATGTGGTCACATGTGCACATGTTCAAAATGCGCTACCAAATTGGTTGAGAGTAGCGGAAAATGTCCGATGTGCAGAGCACCCGCAGTTGAGGTGATCCGGGCTTATTCTGTATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

829

Amino Acids

92.89

Weight (kDa)

4.74

Isoelectric Point (pI)

60.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 775 - 819 7.4e-10 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 506, 2488
Acc36I ACCTGC 1 cut(s) 580
AccB1I GGYRCC 1 cut(s) 2040
AccB7I CCANNNNNTGG 2 cut(s) 1603, 1905
AccI GTMKAC 1 cut(s) 16
AciI CCGC 7 cut(s) 778, 784, 1738, 1896, 2012, 2427, 2454
AclWI GGATC 1 cut(s) 2461
AcoI YGGCCR 2 cut(s) 1009, 2066
AcsI RAATTY 4 cut(s) 387, 660, 1474, 2325
AcuI CTGAAG 2 cut(s) 1671, 1959
AdeI CACNNNGTG 1 cut(s) 1507
AfaI GTAC 1 cut(s) 519
AfeI AGCGCT 1 cut(s) 2090
AfiI CCNNNNNNNGG 4 cut(s) 947, 1603, 1905, 2247
AflIII ACRYGT 2 cut(s) 2382, 2390
AhdI GACNNNNNGTC 1 cut(s) 896
AjnI CCWGG 5 cut(s) 240, 1503, 1596, 1716, 2043
AluBI AGCT 9 cut(s) 57, 142, 686, 963, 1121, 1408, 1514, 1789, 1922
AluI AGCT 9 cut(s) 57, 142, 686, 963, 1121, 1408, 1514, 1789, 1922
Alw21I GWGCWC 5 cut(s) 36, 345, 753, 2390, 2452
Alw26I GTCTC 6 cut(s) 376, 673, 838, 904, 1822, 2288
Alw44I GTGCAC 1 cut(s) 2386
AlwI GGATC 1 cut(s) 2461
AlwNI CAGNNNCTG 1 cut(s) 902
Ama87I CYCGRG 2 cut(s) 108, 173
Aor51HI AGCGCT 1 cut(s) 2090
AoxI GGCC 5 cut(s) 634, 1009, 1706, 2066, 2181
ApaLI GTGCAC 1 cut(s) 2386
ApeKI GCWGC 5 cut(s) 960, 963, 1121, 2014, 2143
ApoI RAATTY 4 cut(s) 387, 660, 1474, 2325
Asp700I GAANNNNTTC 1 cut(s) 1206
AspLEI GCGC 2 cut(s) 2091, 2405
AspS9I GGNCC 3 cut(s) 282, 1593, 1706
AsuC2I CCSGG 3 cut(s) 109, 110, 2471
AvaI CYCGRG 2 cut(s) 108, 173
AvaII GGWCC 2 cut(s) 282, 1593
BaeGI GKGCMC 2 cut(s) 103, 2390
BalI TGGCCA 2 cut(s) 1011, 2068
BanI GGYRCC 1 cut(s) 2040
BarI GAAGNNNNNNTAC 2 cut(s) 997, 1029
BauI CACGAG 1 cut(s) 597
Bbv12I GWGCWC 5 cut(s) 36, 345, 753, 2390, 2452
BbvI GCAGC 5 cut(s) 950, 972, 1108, 2026, 2130
BciT130I CCWGG 5 cut(s) 242, 1505, 1598, 1718, 2045
BclI TGATCA 2 cut(s) 1630, 1855
BcnI CCSGG 3 cut(s) 109, 110, 2471
BcoDI GTCTC 6 cut(s) 376, 673, 838, 904, 1822, 2288
BfaI CTAG 4 cut(s) 75, 1125, 2139, 2288
BfoI RGCGCY 1 cut(s) 2092
BfuAI ACCTGC 1 cut(s) 580
BisI GCNGC 6 cut(s) 961, 964, 1122, 1896, 2015, 2144
BlsI GCNGC 6 cut(s) 962, 965, 1123, 1897, 2016, 2145
Bme1390I CCNGG 8 cut(s) 109, 110, 242, 1505, 1598, 1718, 2045, 2471
Bme18I GGWCC 2 cut(s) 282, 1593
BmeRI GACNNNNNGTC 1 cut(s) 896
BmeT110I CYCGRG 2 cut(s) 108, 173
BmgT120I GGNCC 3 cut(s) 282, 1593, 1706
BmiI GGNNCC 4 cut(s) 284, 1378, 1595, 2042
BmrFI CCNGG 8 cut(s) 109, 110, 242, 1505, 1598, 1718, 2045, 2471
BmrI ACTGGG 2 cut(s) 1915, 2113
BmsI GCATC 7 cut(s) 80, 238, 437, 1339, 1925, 2092, 2227
BmuI ACTGGG 2 cut(s) 1915, 2113
BplI GAGNNNNNCTC 2 cut(s) 670, 702
Bpu10I CCTNAGC 1 cut(s) 1790
BpuEI CTTGAG 3 cut(s) 164, 1484, 2222
BpuMI CCSGG 3 cut(s) 109, 110, 2471
Bsa29I ATCGAT 1 cut(s) 2216
BsaI GGTCTC 3 cut(s) 838, 1822, 2288
BsaJI CCNNGG 4 cut(s) 108, 286, 1093, 1596
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 1940, 1970
Bsc4I CCNNNNNNNGG 4 cut(s) 947, 1603, 1905, 2247
Bse118I RCCGGY 1 cut(s) 2255
Bse1I ACTGG 5 cut(s) 637, 696, 1380, 1910, 2108
Bse3DI GCAATG 2 cut(s) 794, 1241
BseBI CCWGG 5 cut(s) 242, 1505, 1598, 1718, 2045
BseCI ATCGAT 1 cut(s) 2216
BseDI CCNNGG 4 cut(s) 108, 286, 1093, 1596
BseLI CCNNNNNNNGG 4 cut(s) 947, 1603, 1905, 2247
BseMI GCAATG 2 cut(s) 794, 1241
BseNI ACTGG 5 cut(s) 637, 696, 1380, 1910, 2108
BseSI GKGCMC 2 cut(s) 103, 2390
BseXI GCAGC 5 cut(s) 950, 972, 1108, 2026, 2130
BsgI GTGCAG 2 cut(s) 292, 2464
Bsh1285I CGRYCG 1 cut(s) 2216
BshFI GGCC 5 cut(s) 636, 1011, 1708, 2068, 2183
BshNI GGYRCC 1 cut(s) 2040
BshVI ATCGAT 1 cut(s) 2216
BsiEI CGRYCG 1 cut(s) 2216
BsiHKAI GWGCWC 5 cut(s) 36, 345, 753, 2390, 2452
BsiHKCI CYCGRG 2 cut(s) 108, 173
BsiSI CCGG 4 cut(s) 109, 652, 2256, 2470
BslFI GGGAC 7 cut(s) 153, 268, 374, 1312, 1579, 1631, 1922
BslI CCNNNNNNNGG 4 cut(s) 947, 1603, 1905, 2247
BsmAI GTCTC 6 cut(s) 376, 673, 838, 904, 1822, 2288
BsmFI GGGAC 7 cut(s) 153, 268, 374, 1312, 1579, 1631, 1922
BsmI GAATGC 2 cut(s) 786, 1984
BsnI GGCC 5 cut(s) 636, 1011, 1708, 2068, 2183
Bso31I GGTCTC 3 cut(s) 838, 1822, 2288
BsoBI CYCGRG 2 cut(s) 108, 173
Bsp1286I GDGCHC 6 cut(s) 36, 103, 345, 753, 2390, 2452
Bsp143I GATC 5 cut(s) 1564, 1630, 1855, 2213, 2466
BspACI CCGC 7 cut(s) 778, 784, 1738, 1896, 2012, 2427, 2454
BspANI GGCC 5 cut(s) 636, 1011, 1708, 2068, 2183
BspDI ATCGAT 1 cut(s) 2216
BspLI GGNNCC 4 cut(s) 284, 1378, 1595, 2042
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 1 cut(s) 2461
BspT107I GGYRCC 1 cut(s) 2040
BspTNI GGTCTC 3 cut(s) 838, 1822, 2288
BsrDI GCAATG 2 cut(s) 794, 1241
BsrFI RCCGGY 1 cut(s) 2255
BsrI ACTGG 5 cut(s) 637, 696, 1380, 1910, 2108
BssAI RCCGGY 1 cut(s) 2255
BssECI CCNNGG 4 cut(s) 108, 286, 1093, 1596
BssMI GATC 5 cut(s) 1564, 1630, 1855, 2213, 2466
BssSI CACGAG 1 cut(s) 597
BssT1I CCWWGG 1 cut(s) 286
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 5 cut(s) 242, 1505, 1598, 1718, 2045
Bst4CI ACNGT 6 cut(s) 365, 410, 455, 898, 1364, 1869
Bst6I CTCTTC 2 cut(s) 352, 1197
BstC8I GCNNGC 5 cut(s) 533, 1232, 1512, 1740, 2185
BstEII GGTNACC 1 cut(s) 236
BstH2I RGCGCY 1 cut(s) 2092
BstHHI GCGC 2 cut(s) 2091, 2405
BstKTI GATC 5 cut(s) 1567, 1633, 1858, 2216, 2469
BstMAI GTCTC 6 cut(s) 376, 673, 838, 904, 1822, 2288
BstMBI GATC 5 cut(s) 1564, 1630, 1855, 2213, 2466
BstMCI CGRYCG 1 cut(s) 2216
BstMWI GCNNNNNNNGC 5 cut(s) 257, 333, 1127, 1236, 1405
BstNI CCWGG 5 cut(s) 242, 1505, 1598, 1718, 2045
BstNSI RCATGY 3 cut(s) 2083, 2386, 2394
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 8 cut(s) 107, 108, 240, 1503, 1596, 1716, 2043, 2469
BstSLI GKGCMC 2 cut(s) 103, 2390
BstV1I GCAGC 5 cut(s) 950, 972, 1108, 2026, 2130
BstXI CCANNNNNNTGG 1 cut(s) 856
Bsu15I ATCGAT 1 cut(s) 2216
BsuRI GGCC 5 cut(s) 636, 1011, 1708, 2068, 2183
BsuTUI ATCGAT 1 cut(s) 2216
BtsI GCAGTG 2 cut(s) 343, 1311
BtsIMutI CAGTG 3 cut(s) 343, 1311, 1387
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 5 cut(s) 533, 1232, 1512, 1740, 2185
CaiI CAGNNNCTG 1 cut(s) 902
CfoI GCGC 2 cut(s) 2091, 2405
Cfr10I RCCGGY 1 cut(s) 2255
Cfr13I GGNCC 3 cut(s) 282, 1593, 1706
Cfr9I CCCGGG 1 cut(s) 108
ClaI ATCGAT 1 cut(s) 2216
CsiI ACCWGGT 1 cut(s) 1503
Csp6I GTAC 1 cut(s) 518
CspCI CAANNNNNGTGG 4 cut(s) 1090, 1125, 1300, 1335
CviQI GTAC 1 cut(s) 518
DpnI GATC 5 cut(s) 1566, 1632, 1857, 2215, 2468
DpnII GATC 5 cut(s) 1564, 1630, 1855, 2213, 2466
DraIII CACNNNGTG 1 cut(s) 1507
DriI GACNNNNNGTC 1 cut(s) 896
EaeI YGGCCR 2 cut(s) 1009, 2066
Eam1104I CTCTTC 2 cut(s) 352, 1197
Eam1105I GACNNNNNGTC 1 cut(s) 896
EarI CTCTTC 2 cut(s) 352, 1197
Eco130I CCWWGG 1 cut(s) 286
Eco147I AGGCCT 1 cut(s) 2183
Eco31I GGTCTC 3 cut(s) 838, 1822, 2288
Eco47I GGWCC 2 cut(s) 282, 1593
Eco47III AGCGCT 1 cut(s) 2090
Eco57I CTGAAG 2 cut(s) 1671, 1959
Eco88I CYCGRG 2 cut(s) 108, 173
Eco91I GGTNACC 1 cut(s) 236
EcoO65I GGTNACC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 660
EcoRII CCWGG 5 cut(s) 240, 1503, 1596, 1716, 2043
EcoT14I CCWWGG 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 2085
ErhI CCWWGG 1 cut(s) 286
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FaqI GGGAC 7 cut(s) 153, 268, 374, 1312, 1579, 1631, 1922
FauI CCCGC 2 cut(s) 1731, 2461
FauNDI CATATG 2 cut(s) 156, 1873
FbaI TGATCA 2 cut(s) 1630, 1855
FblI GTMKAC 1 cut(s) 16
Fnu4HI GCNGC 6 cut(s) 961, 964, 1122, 1896, 2015, 2144
Fsp4HI GCNGC 6 cut(s) 961, 964, 1122, 1896, 2015, 2144
FspBI CTAG 4 cut(s) 75, 1125, 2139, 2288
GlaI GCGC 2 cut(s) 2090, 2404
GluI GCNGC 6 cut(s) 961, 964, 1122, 1896, 2015, 2144
HaeII RGCGCY 1 cut(s) 2092
HaeIII GGCC 5 cut(s) 636, 1011, 1708, 2068, 2183
HapII CCGG 4 cut(s) 109, 652, 2256, 2470
HhaI GCGC 2 cut(s) 2091, 2405
Hin6I GCGC 2 cut(s) 2089, 2403
HinP1I GCGC 2 cut(s) 2089, 2403
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HpaI GTTAAC 1 cut(s) 622
HpaII CCGG 4 cut(s) 109, 652, 2256, 2470
Hpy166II GTNNAC 5 cut(s) 17, 85, 622, 2261, 2388
Hpy8I GTNNAC 5 cut(s) 17, 85, 622, 2261, 2388
HpyAV CCTTC 6 cut(s) 72, 86, 700, 1697, 1806, 2034
HpyCH4III ACNGT 6 cut(s) 365, 410, 455, 898, 1364, 1869
HpyCH4IV ACGT 1 cut(s) 1955
HpyF10VI GCNNNNNNNGC 5 cut(s) 257, 333, 1127, 1236, 1405
HpySE526I ACGT 1 cut(s) 1955
HspAI GCGC 2 cut(s) 2089, 2403
Ksp22I TGATCA 2 cut(s) 1630, 1855
KspAI GTTAAC 1 cut(s) 622
Kzo9I GATC 5 cut(s) 1564, 1630, 1855, 2213, 2466
LmnI GCTCC 4 cut(s) 748, 1186, 1376, 1948
Lsp1109I GCAGC 5 cut(s) 950, 972, 1108, 2026, 2130
LweI GCATC 7 cut(s) 80, 238, 437, 1339, 1925, 2092, 2227
MabI ACCWGGT 1 cut(s) 1503
MaeI CTAG 4 cut(s) 75, 1125, 2139, 2288
MaeII ACGT 1 cut(s) 1955
MaeIII GTNAC 6 cut(s) 236, 551, 760, 1364, 2049, 2378
MalI GATC 5 cut(s) 1566, 1632, 1857, 2215, 2468
MboI GATC 5 cut(s) 1564, 1630, 1855, 2213, 2466
MhlI GDGCHC 6 cut(s) 36, 103, 345, 753, 2390, 2452
MlsI TGGCCA 2 cut(s) 1011, 2068
MluNI TGGCCA 2 cut(s) 1011, 2068
MlyI GAGTC 6 cut(s) 172, 917, 983, 1493, 1999, 2057
MmeI TCCRAC 3 cut(s) 223, 726, 2157
Mox20I TGGCCA 2 cut(s) 1011, 2068
Mph1103I ATGCAT 1 cut(s) 2085
MroXI GAANNNNTTC 1 cut(s) 1206
MscI TGGCCA 2 cut(s) 1011, 2068
MseI TTAA 2 cut(s) 621, 701
MslI CAYNNNNRTG 5 cut(s) 854, 1347, 1449, 1557, 2192
Msp20I TGGCCA 2 cut(s) 1011, 2068
MspA1I CMGCKG 2 cut(s) 963, 1121
MspI CCGG 4 cut(s) 109, 652, 2256, 2470
MspR9I CCNGG 8 cut(s) 109, 110, 242, 1505, 1598, 1718, 2045, 2471
Mva1269I GAATGC 2 cut(s) 786, 1984
MvaI CCWGG 5 cut(s) 242, 1505, 1598, 1718, 2045
MwoI GCNNNNNNNGC 5 cut(s) 257, 333, 1127, 1236, 1405
NciI CCSGG 3 cut(s) 109, 110, 2471
NdeI CATATG 2 cut(s) 156, 1873
NdeII GATC 5 cut(s) 1564, 1630, 1855, 2213, 2466
NlaIV GGNNCC 4 cut(s) 284, 1378, 1595, 2042
NmuCI GTSAC 4 cut(s) 236, 551, 2049, 2378
NsiI ATGCAT 1 cut(s) 2085
NspI RCATGY 3 cut(s) 2083, 2386, 2394
PaeR7I CTCGAG 1 cut(s) 173
PceI AGGCCT 1 cut(s) 2183
PciI ACATGT 2 cut(s) 2382, 2390
PctI GAATGC 2 cut(s) 786, 1984
PdmI GAANNNNTTC 1 cut(s) 1206
PfeI GAWTC 8 cut(s) 38, 1163, 1172, 1207, 1721, 1727, 2245, 2357
PflMI CCANNNNNTGG 2 cut(s) 1603, 1905
PkrI GCNGC 6 cut(s) 962, 965, 1123, 1897, 2016, 2145
Ple19I CGATCG 1 cut(s) 2216
PleI GAGTC 6 cut(s) 171, 917, 982, 1492, 1998, 2056
PpsI GAGTC 6 cut(s) 171, 917, 982, 1492, 1998, 2056
PscI ACATGT 2 cut(s) 2382, 2390
PsiI TTATAA 2 cut(s) 506, 2488
Psp6I CCWGG 5 cut(s) 240, 1503, 1596, 1716, 2043
PspEI GGTNACC 1 cut(s) 236
PspGI CCWGG 5 cut(s) 240, 1503, 1596, 1716, 2043
PspN4I GGNNCC 4 cut(s) 284, 1378, 1595, 2042
PspPI GGNCC 3 cut(s) 282, 1593, 1706
PstNI CAGNNNCTG 1 cut(s) 902
PvuI CGATCG 1 cut(s) 2216
PvuII CAGCTG 2 cut(s) 963, 1121
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
RseI CAYNNNNRTG 5 cut(s) 854, 1347, 1449, 1557, 2192
SaqAI TTAA 2 cut(s) 621, 701
SatI GCNGC 6 cut(s) 961, 964, 1122, 1896, 2015, 2144
Sau3AI GATC 5 cut(s) 1564, 1630, 1855, 2213, 2466
Sau96I GGNCC 3 cut(s) 282, 1593, 1706
SchI GAGTC 6 cut(s) 172, 917, 983, 1493, 1999, 2057
ScrFI CCNGG 8 cut(s) 109, 110, 242, 1505, 1598, 1718, 2045, 2471
SduI GDGCHC 6 cut(s) 36, 103, 345, 753, 2390, 2452
SexAI ACCWGGT 1 cut(s) 1503
SfaNI GCATC 7 cut(s) 80, 238, 437, 1339, 1925, 2092, 2227
Sfr274I CTCGAG 1 cut(s) 173
SinI GGWCC 2 cut(s) 282, 1593
SlaI CTCGAG 1 cut(s) 173
SmaI CCCGGG 1 cut(s) 110
SmiMI CAYNNNNRTG 5 cut(s) 854, 1347, 1449, 1557, 2192
SmlI CTYRAG 4 cut(s) 143, 173, 1463, 2201
SmoI CTYRAG 4 cut(s) 143, 173, 1463, 2201
SseBI AGGCCT 1 cut(s) 2183
SsiI CCGC 7 cut(s) 778, 784, 1738, 1896, 2012, 2427, 2454
SspMI CTAG 4 cut(s) 75, 1125, 2139, 2288
StuI AGGCCT 1 cut(s) 2183
StyD4I CCNGG 8 cut(s) 107, 108, 240, 1503, 1596, 1716, 2043, 2469
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 6 cut(s) 365, 410, 455, 898, 1364, 1869
TaiI ACGT 1 cut(s) 1958
TaqI TCGA 5 cut(s) 36, 174, 802, 854, 2216
TaqII GACCGA 2 cut(s) 1107, 2238
TauI GCSGC 1 cut(s) 1898
TfiI GAWTC 8 cut(s) 38, 1163, 1172, 1207, 1721, 1727, 2245, 2357
Tru1I TTAA 2 cut(s) 621, 701
Tru9I TTAA 2 cut(s) 621, 701
TscAI CASTG 3 cut(s) 343, 1318, 1387
TseFI GTSAC 4 cut(s) 236, 551, 2049, 2378
TseI GCWGC 5 cut(s) 960, 963, 1121, 2014, 2143
Tsp45I GTSAC 4 cut(s) 236, 551, 2049, 2378
TspGWI ACGGA 2 cut(s) 1832, 2022
TspMI CCCGGG 1 cut(s) 108
TspRI CASTG 3 cut(s) 343, 1318, 1387
Van91I CCANNNNNTGG 2 cut(s) 1603, 1905
VneI GTGCAC 1 cut(s) 2386
VpaK11BI GGWCC 2 cut(s) 282, 1593
XapI RAATTY 4 cut(s) 387, 660, 1474, 2325
XbaI TCTAGA 1 cut(s) 74
XceI RCATGY 3 cut(s) 2083, 2386, 2394
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XhoI CTCGAG 1 cut(s) 173
XmaI CCCGGG 1 cut(s) 108
XmiI GTMKAC 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 1206
XspI CTAG 4 cut(s) 75, 1125, 2139, 2288
Zsp2I ATGCAT 1 cut(s) 2085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.