Rorug05G0299800

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003793
Physical Location & Seq
Forward (+)
34808351 .. 34808893
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0299800.1

Sequence Viewer

Length: 462 bp
ATGCTTCTTCCTCCTCTGTCTCCCCCATGCCTTCAAGAAGCTCGGCCGATTCGATGTCGCCGATATGCTCAACGGATCTTGGGTCGTCATCGCCAGCGACTCTTAAGCCAGGCTGGTGGCGGTCTCACTTCTCACTCTGGTTCTGGATTTGAAGTGGATGGACAAGGCGCCTTATGCTCTCATTTGACCACTCTGGTTGTGGGTTTCAACCGAAATCGAAACTACCCAGATTTCATGGTCATGGGTTCTGGTATGTGGCACATGCTTCATTTAACTAATGCATCCGATTATGGTACTTCATTGCAATTCACTAAGGACTCATGCTGCTTCTTGGTCTCATCTGAGCAGCATGAAGAAGCAATAATTACAGGCTCTGTGCTGGTCAGACCTTCGTCGCATCTCTTCTGGATTGGGATACCCACTTTGATCAACTCAATGCTGAATACAGATGAGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

153

Amino Acids

16.99

Weight (kDa)

8.37

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 1 cut(s) 295
AflII CTTAAG 1 cut(s) 103
AgsI TTSAA 3 cut(s) 35, 152, 208
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 2 cut(s) 41, 457
AluI AGCT 2 cut(s) 41, 457
Alw26I GTCTC 3 cut(s) 24, 128, 340
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 374
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 324, 346
AspLEI GCGC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 311, 358
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 110
BciVI GTATCC 1 cut(s) 408
BclI TGATCA 1 cut(s) 426
BcoDI GTCTC 3 cut(s) 24, 128, 340
BfoI RGCGCY 1 cut(s) 171
BfrI CTTAAG 1 cut(s) 103
BfuI GTATCC 1 cut(s) 408
BisI GCNGC 2 cut(s) 325, 347
BlsI GCNGC 2 cut(s) 326, 348
Bme1390I CCNGG 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 290, 406
BoxI GACNNNNGTC 1 cut(s) 391
BsaHI GRCGYC 1 cut(s) 168
BsaI GGTCTC 2 cut(s) 128, 340
Bse3DI GCAATG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 110
BseGI GGATG 2 cut(s) 163, 281
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 1 cut(s) 333
BseX3I CGGCCG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 311, 358
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 47
BsmAI GTCTC 3 cut(s) 24, 128, 340
BsnI GGCC 1 cut(s) 46
Bso31I GGTCTC 2 cut(s) 128, 340
Bsp143I GATC 2 cut(s) 75, 426
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 169
BspPI GGATC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 167
BspTI CTTAAG 1 cut(s) 103
BspTNI GGTCTC 2 cut(s) 128, 340
BsrDI GCAATG 1 cut(s) 299
BssMI GATC 2 cut(s) 75, 426
BssNI GRCGYC 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 312, 342
BstF5I GGATG 2 cut(s) 163, 281
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 2 cut(s) 78, 429
BstMAI GTCTC 3 cut(s) 24, 128, 340
BstMBI GATC 2 cut(s) 75, 426
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 265
BstPAI GACNNNNGTC 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 311, 358
BstX2I RGATCY 1 cut(s) 75
BstXI CCANNNNNNTGG 1 cut(s) 116
BstYI RGATCY 1 cut(s) 75
BstZI CGGCCG 1 cut(s) 44
BsuI GTATCC 1 cut(s) 408
BsuRI GGCC 1 cut(s) 46
BtgZI GCGATG 1 cut(s) 74
BtsCI GGATG 2 cut(s) 163, 281
Cac8I GCNNGC 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 374
CfoI GCGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 294
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 6 cut(s) 27, 235, 241, 262, 321, 350
CviJI RGCY 6 cut(s) 41, 46, 108, 113, 372, 457
CviKI_1 RGCY 6 cut(s) 41, 46, 108, 113, 372, 457
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 2 cut(s) 312, 342
DinI GGCGCC 1 cut(s) 169
DpnI GATC 2 cut(s) 77, 428
DpnII GATC 2 cut(s) 75, 426
EaeI YGGCCR 1 cut(s) 44
EagI CGGCCG 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
EclXI CGGCCG 1 cut(s) 44
Eco31I GGTCTC 2 cut(s) 128, 340
Eco52I CGGCCG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 283
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
FaeI CATG 6 cut(s) 30, 238, 244, 265, 324, 353
FatI CATG 6 cut(s) 26, 234, 240, 261, 320, 349
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 2 cut(s) 325, 347
FokI GGATG 2 cut(s) 170, 268
Fsp4HI GCNGC 2 cut(s) 325, 347
GlaI GCGC 1 cut(s) 169
GluI GCNGC 2 cut(s) 325, 347
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 46
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 6 cut(s) 30, 238, 244, 265, 324, 353
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 49, 99, 317
Hpy188I TCNGA 3 cut(s) 286, 343, 386
Hpy188III TCNNGA 3 cut(s) 35, 144, 406
Hpy99I CGWCG 1 cut(s) 397
HpyAV CCTTC 2 cut(s) 41, 399
HpyCH4V TGCA 2 cut(s) 281, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 312, 342
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 6 cut(s) 30, 238, 244, 265, 324, 353
HspAI GCGC 1 cut(s) 168
KasI GGCGCC 1 cut(s) 167
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 2 cut(s) 75, 426
Lsp1109I GCAGC 2 cut(s) 311, 358
LweI GCATC 2 cut(s) 290, 406
MalI GATC 2 cut(s) 77, 428
MboI GATC 2 cut(s) 75, 426
MboII GAAGA 2 cut(s) 365, 394
MflI RGATCY 1 cut(s) 75
MluCI AATT 2 cut(s) 305, 363
Mly113I GGCGCC 1 cut(s) 168
MlyI GAGTC 2 cut(s) 93, 311
MnlI CCTC 2 cut(s) 21, 24
Mph1103I ATGCAT 1 cut(s) 283
MseI TTAA 2 cut(s) 104, 272
MslI CAYNNNNRTG 1 cut(s) 239
MspCI CTTAAG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 174
NarI GGCGCC 1 cut(s) 168
NdeII GATC 2 cut(s) 75, 426
NlaIII CATG 6 cut(s) 30, 238, 244, 265, 324, 353
NlaIV GGNNCC 1 cut(s) 169
NmeAIII GCCGAG 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 283
NspI RCATGY 1 cut(s) 265
PcsI WCGNNNNNNNCGW 2 cut(s) 49, 58
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 2 cut(s) 326, 348
PleI GAGTC 2 cut(s) 93, 311
PluTI GGCGCC 1 cut(s) 171
PpsI GAGTC 2 cut(s) 93, 311
PshAI GACNNNNGTC 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 1 cut(s) 75
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 2 cut(s) 104, 272
SatI GCNGC 2 cut(s) 325, 347
Sau3AI GATC 2 cut(s) 75, 426
SchI GAGTC 2 cut(s) 93, 311
ScrFI CCNGG 1 cut(s) 110
SetI ASST 3 cut(s) 43, 391, 459
SfaNI GCATC 2 cut(s) 290, 406
SfoI GGCGCC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 2 cut(s) 305, 363
SsiI CCGC 1 cut(s) 120
SspDI GGCGCC 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 108
TaqI TCGA 2 cut(s) 52, 217
TasI AATT 2 cut(s) 305, 363
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 2 cut(s) 104, 272
Tru9I TTAA 2 cut(s) 104, 272
TseI GCWGC 2 cut(s) 324, 346
TspDTI ATGAA 4 cut(s) 223, 257, 288, 366
TspGWI ACGGA 1 cut(s) 88
Vha464I CTTAAG 1 cut(s) 103
XceI RCATGY 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.