Rorug05G0299700

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003793
Physical Location & Seq
Reverse (-)
34675044 .. 34798120
123077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0299700.1

Sequence Viewer

Length: 891 bp
ATGCCGAGTGAAGGTGCAGACCAGTCGGAGGGAGACAGCGAACCCTTCGTCGAAATAGACCCAACCCAGCGGTACGGCCGTTACGACGAGCTACTGGGTTCCGGCGCAGTCAAAAAGGTGTACCGAGCTTTTGATCAAGAAGAGGGCATAGAGGTGGCATGGAACCAGGTCAAACTGAGTAACTTCATCAACGATTCCGCCATGACCGAAAGGCTTTACTCCGAGGTTCGGTTGCTGAAGTCCCTGAAGAACAAAAACATCATTGTTTTGCATAACGTGTGGAGAGACAGGGAGAAAAACATTCTGAATTTCATGACTGAGGTTTGTACCAGTGGGAATCTGAGGGAGTACAGGAAGAAGCACAAGAACGTTTCGATGAAGGCCTTGAAGAAGTGGTCGTTTCAGATCTTGAAAGGGTTGGAGTATTTGCATACGCATGAGCCCTGTGTGATTCATAGAGATCTCAATTGCAGCAATGTGTTTGTCAATGGGAATCTTGGCCAGGTGAAGATTGGTGACTTGGGACTGGCTGCTATAGTAGGGAAGACTCACTCAGCTCATTCAGTGCTAGGCACACCAGAATTTATGGCACCAGAGCTTTATGAAGAGCATTACACTGAAATGGTGGACATATACTCATTTGGAATGTGTGTACTAGAGATGGTGACCTTGGAAATGCCCTACGGCGAATGCGACAATATTGCCAAAATATACAAGAAGGTAACCTCCGGGGTCAGACCTCAGGCCTTGAACAAGATCAAGGACCCGGAGGTGAGGGCATTTGTCGAGAGGTGCCTTGCACAACCTAGGGCGAGACCCTCTGCAACCGAACTCCTCAAGGACCCGTTCTTTGATGAGGTTGATGACGACGACGATGACGAAAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

296

Amino Acids

33.82

Weight (kDa)

5.31

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 29 - 284 6.1e-51 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 29 - 280 8.9e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 589, 792
AciI CCGC 2 cut(s) 70, 198
AclI AACGTT 1 cut(s) 369
AcoI YGGCCR 2 cut(s) 76, 499
AcsI RAATTY 2 cut(s) 307, 581
AcuI CTGAAG 2 cut(s) 257, 266
AfaI GTAC 5 cut(s) 74, 122, 328, 350, 654
AfiI CCNNNNNNNGG 3 cut(s) 11, 28, 228
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 3 cut(s) 388, 412, 751
AjnI CCWGG 2 cut(s) 165, 501
AluBI AGCT 4 cut(s) 91, 128, 557, 598
AluI AGCT 4 cut(s) 91, 128, 557, 598
Alw26I GTCTC 3 cut(s) 27, 279, 808
AoxI GGCC 4 cut(s) 76, 381, 499, 744
ApeKI GCWGC 2 cut(s) 471, 530
ApoI RAATTY 2 cut(s) 307, 581
ArsI GACNNNNNNTTYG 4 cut(s) 33, 65, 833, 865
AspA2I CCTAGG 1 cut(s) 806
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 763, 841
AsuC2I CCSGG 2 cut(s) 730, 767
AsuHPI GGTGA 4 cut(s) 517, 527, 676, 784
AvaII GGWCC 2 cut(s) 763, 841
AvrII CCTAGG 1 cut(s) 806
AxyI CCTNAGG 1 cut(s) 741
BaeI ACNNNNGTAYC 2 cut(s) 64, 97
BalI TGGCCA 1 cut(s) 501
BanI GGYRCC 2 cut(s) 589, 792
BanII GRGCYC 1 cut(s) 444
BbsI GAAGAC 1 cut(s) 551
BbvI GCAGC 2 cut(s) 483, 517
BccI CCATC 1 cut(s) 655
BceAI ACGGC 3 cut(s) 63, 91, 700
BcgI CGANNNNNNTGC 4 cut(s) 6, 40, 683, 717
BciT130I CCWGG 2 cut(s) 167, 503
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 2 cut(s) 730, 767
BcoDI GTCTC 3 cut(s) 27, 279, 808
BfaI CTAG 3 cut(s) 569, 656, 807
BfmI CTRYAG 1 cut(s) 534
BglII AGATCT 2 cut(s) 405, 460
BisI GCNGC 2 cut(s) 472, 531
BlnI CCTAGG 1 cut(s) 806
BlsI GCNGC 2 cut(s) 473, 532
Bme1390I CCNGG 4 cut(s) 167, 503, 730, 767
Bme18I GGWCC 2 cut(s) 763, 841
BmgT120I GGNCC 2 cut(s) 763, 841
BmiI GGNNCC 6 cut(s) 100, 164, 591, 765, 794, 843
BmrFI CCNGG 4 cut(s) 167, 503, 730, 767
BmrI ACTGGG 1 cut(s) 104
BmuI ACTGGG 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 821
BpuMI CCSGG 2 cut(s) 730, 767
BsaI GGTCTC 1 cut(s) 808
BsaJI CCNNGG 4 cut(s) 222, 669, 729, 806
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 28, 228
Bse1I ACTGG 4 cut(s) 22, 99, 330, 531
Bse21I CCTNAGG 1 cut(s) 741
Bse3DI GCAATG 1 cut(s) 481
BseBI CCWGG 2 cut(s) 167, 503
BseDI CCNNGG 4 cut(s) 222, 669, 729, 806
BseLI CCNNNNNNNGG 3 cut(s) 11, 28, 228
BseMI GCAATG 1 cut(s) 481
BseMII CTCAG 5 cut(s) 167, 309, 332, 567, 755
BseNI ACTGG 4 cut(s) 22, 99, 330, 531
BseRI GAGGAG 1 cut(s) 824
BseX3I CGGCCG 1 cut(s) 76
BseXI GCAGC 2 cut(s) 483, 517
BseYI CCCAGC 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 4 cut(s) 78, 383, 501, 746
BshNI GGYRCC 2 cut(s) 589, 792
BsiEI CGRYCG 1 cut(s) 79
BsiSI CCGG 3 cut(s) 102, 729, 767
BslFI GGGAC 2 cut(s) 226, 537
BslI CCNNNNNNNGG 3 cut(s) 11, 28, 228
BsmAI GTCTC 3 cut(s) 27, 279, 808
BsmFI GGGAC 2 cut(s) 226, 537
BsmI GAATGC 1 cut(s) 695
BsnI GGCC 4 cut(s) 78, 383, 501, 746
Bso31I GGTCTC 1 cut(s) 808
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 4 cut(s) 133, 405, 460, 756
BspACI CCGC 2 cut(s) 70, 198
BspANI GGCC 4 cut(s) 78, 383, 501, 746
BspCNI CTCAG 5 cut(s) 168, 310, 333, 566, 754
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 6 cut(s) 100, 164, 591, 765, 794, 843
BspQI GCTCTTC 1 cut(s) 600
BspT107I GGYRCC 2 cut(s) 589, 792
BspTNI GGTCTC 1 cut(s) 808
BsrDI GCAATG 1 cut(s) 481
BsrI ACTGG 4 cut(s) 22, 99, 330, 531
BssECI CCNNGG 4 cut(s) 222, 669, 729, 806
BssMI GATC 4 cut(s) 133, 405, 460, 756
BssT1I CCWWGG 2 cut(s) 669, 806
Bst2UI CCWGG 2 cut(s) 167, 503
Bst6I CTCTTC 2 cut(s) 135, 600
BstDEI CTNAG 5 cut(s) 176, 318, 341, 553, 741
BstEII GGTNACC 2 cut(s) 664, 721
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 4 cut(s) 136, 408, 463, 759
BstMAI GTCTC 3 cut(s) 27, 279, 808
BstMBI GATC 4 cut(s) 133, 405, 460, 756
BstMCI CGRYCG 1 cut(s) 79
BstNI CCWGG 2 cut(s) 167, 503
BstPI GGTNACC 2 cut(s) 664, 721
BstSCI CCNGG 4 cut(s) 165, 501, 728, 765
BstSFI CTRYAG 1 cut(s) 534
BstV1I GCAGC 2 cut(s) 483, 517
BstV2I GAAGAC 1 cut(s) 551
BstX2I RGATCY 2 cut(s) 405, 460
BstYI RGATCY 2 cut(s) 405, 460
BstZI CGGCCG 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 741
BsuRI GGCC 4 cut(s) 78, 383, 501, 746
BtsIMutI CAGTG 3 cut(s) 337, 570, 615
CciI TCATGA 1 cut(s) 312
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 763, 841
CsiI ACCWGGT 1 cut(s) 165
Csp6I GTAC 5 cut(s) 73, 121, 327, 349, 653
CviAII CATG 4 cut(s) 159, 202, 313, 437
CviQI GTAC 5 cut(s) 73, 121, 327, 349, 653
DdeI CTNAG 5 cut(s) 176, 318, 341, 553, 741
DpnI GATC 4 cut(s) 135, 407, 462, 758
DpnII GATC 4 cut(s) 133, 405, 460, 756
EaeI YGGCCR 2 cut(s) 76, 499
EagI CGGCCG 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 135, 600
EarI CTCTTC 2 cut(s) 135, 600
EciI GGCGGA 1 cut(s) 187
EclXI CGGCCG 1 cut(s) 76
Eco130I CCWWGG 2 cut(s) 669, 806
Eco147I AGGCCT 2 cut(s) 383, 746
Eco24I GRGCYC 1 cut(s) 444
Eco31I GGTCTC 1 cut(s) 808
Eco47I GGWCC 2 cut(s) 763, 841
Eco52I CGGCCG 1 cut(s) 76
Eco57I CTGAAG 2 cut(s) 257, 266
Eco81I CCTNAGG 1 cut(s) 741
Eco91I GGTNACC 2 cut(s) 664, 721
EcoO109I RGGNCCY 2 cut(s) 763, 841
EcoO65I GGTNACC 2 cut(s) 664, 721
EcoRII CCWGG 2 cut(s) 165, 501
EcoT14I CCWWGG 2 cut(s) 669, 806
EcoT38I GRGCYC 1 cut(s) 444
ErhI CCWWGG 2 cut(s) 669, 806
FaeI CATG 4 cut(s) 162, 205, 316, 440
FaqI GGGAC 2 cut(s) 226, 537
FatI CATG 4 cut(s) 158, 201, 312, 436
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 472, 531
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 2 cut(s) 472, 531
FspBI CTAG 3 cut(s) 569, 656, 807
GlaI GCGC 1 cut(s) 106
GluI GCNGC 2 cut(s) 472, 531
GsaI CCCAGC 1 cut(s) 70
HaeIII GGCC 4 cut(s) 78, 383, 501, 746
HapII CCGG 3 cut(s) 102, 729, 767
HhaI GCGC 1 cut(s) 107
Hin1II CATG 4 cut(s) 162, 205, 316, 440
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 5 cut(s) 194, 337, 451, 493, 547
HpaII CCGG 3 cut(s) 102, 729, 767
HphI GGTGA 4 cut(s) 517, 527, 676, 784
Hpy166II GTNNAC 3 cut(s) 121, 628, 653
Hpy188I TCNGA 6 cut(s) 28, 223, 306, 342, 405, 737
Hpy188III TCNNGA 4 cut(s) 137, 313, 409, 787
Hpy8I GTNNAC 3 cut(s) 121, 628, 653
Hpy99I CGWCG 4 cut(s) 53, 89, 872, 875
HpyAV CCTTC 4 cut(s) 5, 55, 373, 712
HpyCH4IV ACGT 2 cut(s) 276, 369
HpyCH4V TGCA 6 cut(s) 17, 271, 430, 471, 800, 824
HpyF3I CTNAG 5 cut(s) 176, 318, 341, 553, 741
HpySE526I ACGT 2 cut(s) 276, 369
Hsp92II CATG 4 cut(s) 162, 205, 316, 440
HspAI GCGC 1 cut(s) 105
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 4 cut(s) 133, 405, 460, 756
LguI GCTCTTC 1 cut(s) 600
Lsp1109I GCAGC 2 cut(s) 483, 517
MabI ACCWGGT 1 cut(s) 165
MaeI CTAG 3 cut(s) 569, 656, 807
MaeII ACGT 2 cut(s) 276, 369
MaeIII GTNAC 5 cut(s) 80, 179, 515, 664, 721
MalI GATC 4 cut(s) 135, 407, 462, 758
MboI GATC 4 cut(s) 133, 405, 460, 756
MboII GAAGA 7 cut(s) 152, 259, 367, 400, 520, 556, 617
MfeI CAATTG 1 cut(s) 466
MflI RGATCY 2 cut(s) 405, 460
MhlI GDGCHC 1 cut(s) 444
MlsI TGGCCA 1 cut(s) 501
MluCI AATT 4 cut(s) 307, 466, 581, 886
MluNI TGGCCA 1 cut(s) 501
MlyI GAGTC 1 cut(s) 541
MmeI TCCRAC 2 cut(s) 6, 399
Mox20I TGGCCA 1 cut(s) 501
MscI TGGCCA 1 cut(s) 501
MseI TTAA 1 cut(s) 889
MslI CAYNNNNRTG 3 cut(s) 152, 435, 620
Msp20I TGGCCA 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 70
MspI CCGG 3 cut(s) 102, 729, 767
MspR9I CCNGG 4 cut(s) 167, 503, 730, 767
MunI CAATTG 1 cut(s) 466
Mva1269I GAATGC 1 cut(s) 695
MvaI CCWGG 2 cut(s) 167, 503
NciI CCSGG 2 cut(s) 730, 767
NdeII GATC 4 cut(s) 133, 405, 460, 756
NlaIII CATG 4 cut(s) 162, 205, 316, 440
NlaIV GGNNCC 6 cut(s) 100, 164, 591, 765, 794, 843
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 2 cut(s) 515, 664
PagI TCATGA 1 cut(s) 312
PceI AGGCCT 2 cut(s) 383, 746
PciSI GCTCTTC 1 cut(s) 600
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 690, 876
PctI GAATGC 1 cut(s) 695
PfeI GAWTC 4 cut(s) 194, 337, 451, 493
PkrI GCNGC 2 cut(s) 473, 532
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
PpuMI RGGWCCY 2 cut(s) 763, 841
Psp1406I AACGTT 1 cut(s) 369
Psp5II RGGWCCY 2 cut(s) 763, 841
Psp6I CCWGG 2 cut(s) 165, 501
PspEI GGTNACC 2 cut(s) 664, 721
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 2 cut(s) 165, 501
PspN4I GGNNCC 6 cut(s) 100, 164, 591, 765, 794, 843
PspPI GGNCC 2 cut(s) 763, 841
PspPPI RGGWCCY 2 cut(s) 763, 841
PsuI RGATCY 2 cut(s) 405, 460
RsaI GTAC 5 cut(s) 74, 122, 328, 350, 654
RsaNI GTAC 5 cut(s) 73, 121, 327, 349, 653
RseI CAYNNNNRTG 3 cut(s) 152, 435, 620
SapI GCTCTTC 1 cut(s) 600
SaqAI TTAA 1 cut(s) 889
SatI GCNGC 2 cut(s) 472, 531
Sau3AI GATC 4 cut(s) 133, 405, 460, 756
Sau96I GGNCC 2 cut(s) 763, 841
SchI GAGTC 1 cut(s) 541
ScrFI CCNGG 4 cut(s) 167, 503, 730, 767
SduI GDGCHC 1 cut(s) 444
SexAI ACCWGGT 1 cut(s) 165
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 2 cut(s) 763, 841
SmiMI CAYNNNNRTG 3 cut(s) 152, 435, 620
SmlI CTYRAG 1 cut(s) 836
SmoI CTYRAG 1 cut(s) 836
Sse9I AATT 4 cut(s) 307, 466, 581, 886
SseBI AGGCCT 2 cut(s) 383, 746
SsiI CCGC 2 cut(s) 70, 198
SspI AATATT 1 cut(s) 700
SspMI CTAG 3 cut(s) 569, 656, 807
StuI AGGCCT 2 cut(s) 383, 746
StyD4I CCNGG 4 cut(s) 165, 501, 728, 765
StyI CCWWGG 2 cut(s) 669, 806
TaiI ACGT 2 cut(s) 279, 372
TaqI TCGA 3 cut(s) 51, 374, 786
TaqII GACCGA 1 cut(s) 221
TasI AATT 4 cut(s) 307, 466, 581, 886
TatI WGTACW 2 cut(s) 348, 652
TfiI GAWTC 4 cut(s) 194, 337, 451, 493
Tru1I TTAA 1 cut(s) 889
Tru9I TTAA 1 cut(s) 889
TscAI CASTG 3 cut(s) 337, 570, 622
TseFI GTSAC 2 cut(s) 515, 664
TseI GCWGC 2 cut(s) 471, 530
Tsp45I GTSAC 2 cut(s) 515, 664
TspDTI ATGAA 5 cut(s) 175, 301, 392, 443, 618
TspRI CASTG 3 cut(s) 337, 570, 622
VpaK11BI GGWCC 2 cut(s) 763, 841
XapI RAATTY 2 cut(s) 307, 581
XcmI CCANNNNNNNNNTGG 1 cut(s) 509
XmaJI CCTAGG 1 cut(s) 806
XspI CTAG 3 cut(s) 569, 656, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.