Rroxscaffold_1G00023890

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003793
Physical Location & Seq
Forward (+)
29538948 .. 29545263
6316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023890.1

Sequence Viewer

Length: 2004 bp
ATGAACAGCCAGCAAAGAGTTGCTTCTGGTGACAATGGAGAAGAACAACCTGCTGAGTTTGGTAATCAAATTGCACGAGTTCGTGATGGATTGGTTGTTAACCAAAGTGGAGGCAGGTCTGAGCATAACCGGAGGGGAATTCGTAAATTATGTGGGAGACAAGCTCTACTGGATATGTTAAAGAAGGCTGAGAGGGAAAGGCAAATAGAACTTCAAGTCTTGTCGGAGCACCAGCCCGTAACACGCTTTGCTCACCGCAACCGCATTCAGTCATTGCTTCGAGGAAGATTTTTACGAAATGGTAGAGCCATTGAGAACGAGAGACCCATTTCGATGGCTGAAACTGAATTGGGCTTATTGAGGCAAAGACATACAGTCTCTGGTCTGAGGGATGGTTTTGACTCCAAATTGGATAGTCCTGTTGGTGGTCAAGTAGGCAGCTGCCATTCTGAGTCATCTTCAAGCAATTCTAATGGTATCAGAAATGGCCATACTCAACCAAACAATTCACATGAAGTCATAAGTGGTTCTTTTGAGCAGTCTGAGGCTAATGATGTTGCAAGTAATGACCGAGGACACAACAGTTGTGGAACATCAGCTGCTAGGGCTGATTTAGGTGGAAACACCATTCAGGATATAGATTCACATGAATCTAATGCTCCCATAGAACATGGGCAAGAAGAGGTTCCTGATAATGTTGTAAGTGGCTGGCAATGCTCATCCTCTATTGAGATTGTTGAAAGTAGAGATGGTGCTTGTCAAAACATGATTGGGAACTTACTTACGACCACTGCTGTTGACCAGTCCCAAGAAACTTTGCACAATGATGTTAATGACCACAGTAACATTCAAGGAGCCAGTGATTTATCTAATGAGCAATCTGAGCTTGATGGGGATGAAAGTGTCATCCACGAACTCAGTCATGCAGATGGCAATATGCTTGAGGATGTAAATTTTCAAGAGTCCAATTCACAGCCACAGCAATGGCAGGATCAAGTTTCAGAAAATGAGGAAGGAGACCAGGTGCAAGCTGATGTGTATAATAGTTTGATGGAAAATGTCGTGGAACATGCAGGTGAAGATCAGCAGGAAACTGCTGGTTATGAATGGTCCCAGGAGTTGGTAGAGAACGAAGATAGAGAAGATCAACTCCAAGAAGTCCCTGAAGTGTGGCACGATGAAAGTGGTTTTCAAGAGGCTGTTCAAAGTTGGTTAGAAGGGCCATCCAGCCAGGATTCCGATTCAGTCAGGCAGGCTGATACCTTTTACTTTCCTGATGATGATAATGCTCATAATACAGAGCTAAGGGAACTTCTAAGCAGGAGAAGGGTCTCTAATCTTCTGAGCAGTGGTTTCCGTCAGAACCTTGATCAACTCATACAGTCATATGTGGAAAGGCAAGGTCATGCCGCCGTTGACTGGGATGAAGCATCAGCTTATCCTGAACTGACTGAAGATATGGAGCAGACGTATCAGAATGAAGTTCAAGTGAATGCTGTTGAGAGTCCTCACCTTGCTCTACCACCGCAGCCAATACCTTCCTCTCCGCTGTGGCACCAGGAGTCACCCCATGATAATTGGCCACGACATGACATGCATCAGCGCTTTGGAATTGACTGGGAGATGGTGAACGATATGAGGATTGACATGGCTAGGCTACAACAGAGGATGAACAACTTGCAAAGGATGTTGGAGGCCTGCATGGATATGCAACTTGAGTTGCAACGATCGATAAGACAAGAAGTTTCTGATGCCTTGAATCGGTCAGCCGGTTCACAAGGGGTGTGTGAAGATGGTCTCCTAGATGATGGGTCTAAATGGGATAATGTAAGGAAAGGAATTTGCTGTATATGTTGTGTTAGCAGTATTGATTCTTTACTATACAGATGTGGTCACATGTGCACGTGTTCAAAATGCGCTACCAAATTGGTTGAGAGTAGCGGAAAATGTCCGATGTGCAGAGCACCCGCAGTTGAGGTGATCCGGGCTTATTCTGTATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

667

Amino Acids

74.66

Weight (kDa)

4.64

Isoelectric Point (pI)

59.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 613 - 657 5.6e-10 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2002
AarI CACCTGC 1 cut(s) 1064
Acc36I ACCTGC 3 cut(s) 58, 105, 1064
AccB1I GGYRCC 1 cut(s) 1554
AccB7I CCANNNNNTGG 1 cut(s) 1120
AciI CCGC 7 cut(s) 256, 262, 1410, 1526, 1547, 1941, 1968
AclWI GGATC 2 cut(s) 999, 1975
AcoI YGGCCR 2 cut(s) 487, 1580
AcsI RAATTY 3 cut(s) 138, 952, 1839
AcuI CTGAAG 2 cut(s) 1185, 1473
AcvI CACGTG 1 cut(s) 1905
AfeI AGCGCT 1 cut(s) 1604
AfiI CCNNNNNNNGG 4 cut(s) 425, 1120, 1419, 1761
AflIII ACRYGT 2 cut(s) 1896, 1904
AhdI GACNNNNNGTC 1 cut(s) 374
AjnI CCWGG 4 cut(s) 1020, 1113, 1230, 1557
AluBI AGCT 7 cut(s) 164, 441, 599, 886, 1031, 1303, 1436
AluI AGCT 7 cut(s) 164, 441, 599, 886, 1031, 1303, 1436
Alw21I GWGCWC 3 cut(s) 231, 1904, 1966
Alw26I GTCTC 6 cut(s) 151, 316, 382, 1011, 1336, 1802
Alw44I GTGCAC 1 cut(s) 1900
AlwI GGATC 2 cut(s) 999, 1975
AlwNI CAGNNNCTG 1 cut(s) 380
Aor51HI AGCGCT 1 cut(s) 1604
AoxI GGCC 4 cut(s) 487, 1220, 1580, 1695
ApaLI GTGCAC 1 cut(s) 1900
ApeKI GCWGC 4 cut(s) 438, 441, 599, 1528
ApoI RAATTY 3 cut(s) 138, 952, 1839
Asp700I GAANNNNTTC 1 cut(s) 684
AspLEI GCGC 2 cut(s) 1605, 1919
AspS9I GGNCC 2 cut(s) 1110, 1220
AsuC2I CCSGG 1 cut(s) 1985
AsuHPI GGTGA 7 cut(s) 41, 245, 1088, 1502, 1557, 1639, 1990
AvaII GGWCC 1 cut(s) 1110
BaeGI GKGCMC 1 cut(s) 1904
BalI TGGCCA 2 cut(s) 489, 1582
BanI GGYRCC 1 cut(s) 1554
BauI CACGAG 1 cut(s) 75
BbrPI CACGTG 1 cut(s) 1905
Bbv12I GWGCWC 3 cut(s) 231, 1904, 1966
BbvI GCAGC 4 cut(s) 428, 450, 586, 1540
BceAI ACGGC 1 cut(s) 1397
BciT130I CCWGG 4 cut(s) 1022, 1115, 1232, 1559
BclI TGATCA 1 cut(s) 1369
BcnI CCSGG 1 cut(s) 1985
BcoDI GTCTC 6 cut(s) 151, 316, 382, 1011, 1336, 1802
BfaI CTAG 3 cut(s) 603, 1653, 1802
BfoI RGCGCY 1 cut(s) 1606
BfuAI ACCTGC 3 cut(s) 58, 105, 1064
BisI GCNGC 5 cut(s) 439, 442, 600, 1410, 1529
BlsI GCNGC 5 cut(s) 440, 443, 601, 1411, 1530
Bme1390I CCNGG 5 cut(s) 1022, 1115, 1232, 1559, 1985
Bme18I GGWCC 1 cut(s) 1110
BmeRI GACNNNNNGTC 1 cut(s) 374
BmgT120I GGNCC 2 cut(s) 1110, 1220
BmiI GGNNCC 4 cut(s) 687, 856, 1112, 1556
BmrFI CCNGG 5 cut(s) 1022, 1115, 1232, 1559, 1985
BmrI ACTGGG 2 cut(s) 1429, 1627
BmsI GCATC 3 cut(s) 1439, 1606, 1741
BmuI ACTGGG 2 cut(s) 1429, 1627
BplI GAGNNNNNCTC 2 cut(s) 148, 180
Bpu10I CCTNAGC 1 cut(s) 1304
BpuEI CTTGAG 2 cut(s) 962, 1736
BpuMI CCSGG 1 cut(s) 1985
Bsa29I ATCGAT 1 cut(s) 1730
BsaAI YACGTR 1 cut(s) 1905
BsaI GGTCTC 4 cut(s) 316, 1011, 1336, 1802
BsaJI CCNNGG 2 cut(s) 571, 1113
BsaWI WCCGGW 1 cut(s) 129
BsaXI ACNNNNNCTCC 4 cut(s) 1008, 1038, 1454, 1484
Bsc4I CCNNNNNNNGG 4 cut(s) 425, 1120, 1419, 1761
Bse118I RCCGGY 1 cut(s) 1769
Bse1I ACTGG 5 cut(s) 174, 802, 858, 1424, 1622
Bse3DI GCAATG 3 cut(s) 272, 719, 989
BseBI CCWGG 4 cut(s) 1022, 1115, 1232, 1559
BseCI ATCGAT 1 cut(s) 1730
BseDI CCNNGG 2 cut(s) 571, 1113
BseGI GGATG 9 cut(s) 397, 719, 901, 906, 952, 1223, 1429, 1674, 1692
BseLI CCNNNNNNNGG 4 cut(s) 425, 1120, 1419, 1761
BseMI GCAATG 3 cut(s) 272, 719, 989
BseMII CTCAG 9 cut(s) 45, 111, 180, 377, 441, 534, 873, 931, 1334
BseNI ACTGG 5 cut(s) 174, 802, 858, 1424, 1622
BseSI GKGCMC 1 cut(s) 1904
BseXI GCAGC 4 cut(s) 428, 450, 586, 1540
BsgI GTGCAG 1 cut(s) 1978
Bsh1285I CGRYCG 1 cut(s) 1730
BshFI GGCC 4 cut(s) 489, 1222, 1582, 1697
BshNI GGYRCC 1 cut(s) 1554
BshVI ATCGAT 1 cut(s) 1730
BsiEI CGRYCG 1 cut(s) 1730
BsiHKAI GWGCWC 3 cut(s) 231, 1904, 1966
BsiSI CCGG 3 cut(s) 130, 1770, 1984
BslFI GGGAC 3 cut(s) 790, 1096, 1145
BslI CCNNNNNNNGG 4 cut(s) 425, 1120, 1419, 1761
BsmAI GTCTC 6 cut(s) 151, 316, 382, 1011, 1336, 1802
BsmFI GGGAC 3 cut(s) 790, 1096, 1145
BsmI GAATGC 2 cut(s) 264, 1498
BsnI GGCC 4 cut(s) 489, 1222, 1582, 1697
Bso31I GGTCTC 4 cut(s) 316, 1011, 1336, 1802
Bsp1286I GDGCHC 3 cut(s) 231, 1904, 1966
Bsp143I GATC 6 cut(s) 991, 1081, 1144, 1369, 1727, 1980
BspACI CCGC 7 cut(s) 256, 262, 1410, 1526, 1547, 1941, 1968
BspANI GGCC 4 cut(s) 489, 1222, 1582, 1697
BspCNI CTCAG 9 cut(s) 46, 112, 181, 378, 442, 535, 874, 930, 1335
BspDI ATCGAT 1 cut(s) 1730
BspLI GGNNCC 4 cut(s) 687, 856, 1112, 1556
BspMI ACCTGC 3 cut(s) 58, 105, 1064
BspPI GGATC 2 cut(s) 999, 1975
BspT107I GGYRCC 1 cut(s) 1554
BspTNI GGTCTC 4 cut(s) 316, 1011, 1336, 1802
BsrDI GCAATG 3 cut(s) 272, 719, 989
BsrFI RCCGGY 1 cut(s) 1769
BsrI ACTGG 5 cut(s) 174, 802, 858, 1424, 1622
BssAI RCCGGY 1 cut(s) 1769
BssECI CCNNGG 2 cut(s) 571, 1113
BssMI GATC 6 cut(s) 991, 1081, 1144, 1369, 1727, 1980
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 4 cut(s) 1022, 1115, 1232, 1559
Bst4CI ACNGT 4 cut(s) 376, 584, 842, 1383
Bst6I CTCTTC 1 cut(s) 675
BstBAI YACGTR 1 cut(s) 1905
BstC8I GCNNGC 5 cut(s) 11, 710, 1029, 1254, 1699
BstF5I GGATG 9 cut(s) 397, 719, 901, 906, 952, 1223, 1429, 1674, 1692
BstH2I RGCGCY 1 cut(s) 1606
BstHHI GCGC 2 cut(s) 1605, 1919
BstKTI GATC 6 cut(s) 994, 1084, 1147, 1372, 1730, 1983
BstMAI GTCTC 6 cut(s) 151, 316, 382, 1011, 1336, 1802
BstMBI GATC 6 cut(s) 991, 1081, 1144, 1369, 1727, 1980
BstMCI CGRYCG 1 cut(s) 1730
BstMWI GCNNNNNNNGC 3 cut(s) 605, 714, 883
BstNI CCWGG 4 cut(s) 1022, 1115, 1232, 1559
BstNSI RCATGY 3 cut(s) 1073, 1597, 1900
BstSCI CCNGG 5 cut(s) 1020, 1113, 1230, 1557, 1983
BstSLI GKGCMC 1 cut(s) 1904
BstV1I GCAGC 4 cut(s) 428, 450, 586, 1540
BstXI CCANNNNNNTGG 2 cut(s) 334, 984
Bsu15I ATCGAT 1 cut(s) 1730
BsuRI GGCC 4 cut(s) 489, 1222, 1582, 1697
BsuTUI ATCGAT 1 cut(s) 1730
BtsCI GGATG 9 cut(s) 397, 719, 901, 906, 952, 1223, 1429, 1674, 1692
BtsI GCAGTG 2 cut(s) 789, 1354
BtsIMutI CAGTG 3 cut(s) 789, 865, 1354
BveI ACCTGC 3 cut(s) 58, 105, 1064
Cac8I GCNNGC 5 cut(s) 11, 710, 1029, 1254, 1699
CaiI CAGNNNCTG 1 cut(s) 380
CfoI GCGC 2 cut(s) 1605, 1919
Cfr10I RCCGGY 1 cut(s) 1769
Cfr13I GGNCC 2 cut(s) 1110, 1220
ClaI ATCGAT 1 cut(s) 1730
CsiI ACCWGGT 1 cut(s) 1020
CspCI CAANNNNNGTGG 4 cut(s) 568, 603, 778, 813
DpnI GATC 6 cut(s) 993, 1083, 1146, 1371, 1729, 1982
DpnII GATC 6 cut(s) 991, 1081, 1144, 1369, 1727, 1980
DriI GACNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 2 cut(s) 487, 1580
Eam1104I CTCTTC 1 cut(s) 675
Eam1105I GACNNNNNGTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 675
Eco147I AGGCCT 1 cut(s) 1697
Eco31I GGTCTC 4 cut(s) 316, 1011, 1336, 1802
Eco47I GGWCC 1 cut(s) 1110
Eco47III AGCGCT 1 cut(s) 1604
Eco57I CTGAAG 2 cut(s) 1185, 1473
Eco72I CACGTG 1 cut(s) 1905
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 4 cut(s) 1020, 1113, 1230, 1557
EcoT22I ATGCAT 1 cut(s) 1599
FalI AAGNNNNNCTT 4 cut(s) 7, 39, 514, 546
FaqI GGGAC 3 cut(s) 790, 1096, 1145
FauI CCCGC 1 cut(s) 1975
FauNDI CATATG 1 cut(s) 1387
FbaI TGATCA 1 cut(s) 1369
Fnu4HI GCNGC 5 cut(s) 439, 442, 600, 1410, 1529
FokI GGATG 9 cut(s) 404, 706, 893, 908, 959, 1210, 1436, 1681, 1699
Fsp4HI GCNGC 5 cut(s) 439, 442, 600, 1410, 1529
FspBI CTAG 3 cut(s) 603, 1653, 1802
GlaI GCGC 2 cut(s) 1604, 1918
GluI GCNGC 5 cut(s) 439, 442, 600, 1410, 1529
HaeII RGCGCY 1 cut(s) 1606
HaeIII GGCC 4 cut(s) 489, 1222, 1582, 1697
HapII CCGG 3 cut(s) 130, 1770, 1984
HhaI GCGC 2 cut(s) 1605, 1919
Hin6I GCGC 2 cut(s) 1603, 1917
HinP1I GCGC 2 cut(s) 1603, 1917
HincII GTYRAC 3 cut(s) 100, 799, 1417
HindII GTYRAC 3 cut(s) 100, 799, 1417
HpaI GTTAAC 1 cut(s) 100
HpaII CCGG 3 cut(s) 130, 1770, 1984
HphI GGTGA 7 cut(s) 41, 245, 1088, 1502, 1557, 1639, 1990
Hpy166II GTNNAC 6 cut(s) 100, 799, 1417, 1630, 1775, 1902
Hpy188III TCNNGA 7 cut(s) 83, 632, 689, 959, 1193, 1274, 1442
Hpy8I GTNNAC 6 cut(s) 100, 799, 1417, 1630, 1775, 1902
HpyAV CCTTC 5 cut(s) 178, 1007, 1211, 1320, 1548
HpyCH4III ACNGT 4 cut(s) 376, 584, 842, 1383
HpyCH4IV ACGT 2 cut(s) 1469, 1904
HpyF10VI GCNNNNNNNGC 3 cut(s) 605, 714, 883
HpySE526I ACGT 2 cut(s) 1469, 1904
HspAI GCGC 2 cut(s) 1603, 1917
Ksp22I TGATCA 1 cut(s) 1369
KspAI GTTAAC 1 cut(s) 100
Kzo9I GATC 6 cut(s) 991, 1081, 1144, 1369, 1727, 1980
LmnI GCTCC 4 cut(s) 226, 664, 854, 1462
Lsp1109I GCAGC 4 cut(s) 428, 450, 586, 1540
LweI GCATC 3 cut(s) 1439, 1606, 1741
MabI ACCWGGT 1 cut(s) 1020
MaeI CTAG 3 cut(s) 603, 1653, 1802
MaeII ACGT 2 cut(s) 1469, 1904
MaeIII GTNAC 5 cut(s) 29, 238, 842, 1563, 1892
MalI GATC 6 cut(s) 993, 1083, 1146, 1371, 1729, 1982
MboI GATC 6 cut(s) 991, 1081, 1144, 1369, 1727, 1980
MhlI GDGCHC 3 cut(s) 231, 1904, 1966
MlsI TGGCCA 2 cut(s) 489, 1582
MluNI TGGCCA 2 cut(s) 489, 1582
MlyI GAGTC 5 cut(s) 395, 461, 971, 1513, 1571
MmeI TCCRAC 2 cut(s) 204, 1671
Mox20I TGGCCA 2 cut(s) 489, 1582
Mph1103I ATGCAT 1 cut(s) 1599
MroXI GAANNNNTTC 1 cut(s) 684
MscI TGGCCA 2 cut(s) 489, 1582
MseI TTAA 3 cut(s) 99, 179, 831
MslI CAYNNNNRTG 6 cut(s) 332, 825, 927, 982, 1074, 1706
Msp20I TGGCCA 2 cut(s) 489, 1582
MspA1I CMGCKG 3 cut(s) 441, 599, 1549
MspI CCGG 3 cut(s) 130, 1770, 1984
MspR9I CCNGG 5 cut(s) 1022, 1115, 1232, 1559, 1985
Mva1269I GAATGC 2 cut(s) 264, 1498
MvaI CCWGG 4 cut(s) 1022, 1115, 1232, 1559
MwoI GCNNNNNNNGC 3 cut(s) 605, 714, 883
NciI CCSGG 1 cut(s) 1985
NdeI CATATG 1 cut(s) 1387
NdeII GATC 6 cut(s) 991, 1081, 1144, 1369, 1727, 1980
NlaIV GGNNCC 4 cut(s) 687, 856, 1112, 1556
NmuCI GTSAC 3 cut(s) 29, 1563, 1892
NsiI ATGCAT 1 cut(s) 1599
NspI RCATGY 3 cut(s) 1073, 1597, 1900
PaqCI CACCTGC 1 cut(s) 1064
PceI AGGCCT 1 cut(s) 1697
PciI ACATGT 1 cut(s) 1896
PctI GAATGC 2 cut(s) 264, 1498
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 6 cut(s) 641, 650, 1235, 1241, 1759, 1871
PflMI CCANNNNNTGG 1 cut(s) 1120
PkrI GCNGC 5 cut(s) 440, 443, 601, 1411, 1530
Ple19I CGATCG 1 cut(s) 1730
PleI GAGTC 5 cut(s) 395, 460, 970, 1512, 1570
PmaCI CACGTG 1 cut(s) 1905
PmlI CACGTG 1 cut(s) 1905
PpsI GAGTC 5 cut(s) 395, 460, 970, 1512, 1570
Ppu21I YACGTR 1 cut(s) 1905
PscI ACATGT 1 cut(s) 1896
PsiI TTATAA 1 cut(s) 2002
Psp6I CCWGG 4 cut(s) 1020, 1113, 1230, 1557
PspCI CACGTG 1 cut(s) 1905
PspGI CCWGG 4 cut(s) 1020, 1113, 1230, 1557
PspN4I GGNNCC 4 cut(s) 687, 856, 1112, 1556
PspPI GGNCC 2 cut(s) 1110, 1220
PstNI CAGNNNCTG 1 cut(s) 380
PvuI CGATCG 1 cut(s) 1730
PvuII CAGCTG 2 cut(s) 441, 599
RseI CAYNNNNRTG 6 cut(s) 332, 825, 927, 982, 1074, 1706
SaqAI TTAA 3 cut(s) 99, 179, 831
SatI GCNGC 5 cut(s) 439, 442, 600, 1410, 1529
Sau3AI GATC 6 cut(s) 991, 1081, 1144, 1369, 1727, 1980
Sau96I GGNCC 2 cut(s) 1110, 1220
SchI GAGTC 5 cut(s) 395, 461, 971, 1513, 1571
ScrFI CCNGG 5 cut(s) 1022, 1115, 1232, 1559, 1985
SduI GDGCHC 3 cut(s) 231, 1904, 1966
SexAI ACCWGGT 1 cut(s) 1020
SfaNI GCATC 3 cut(s) 1439, 1606, 1741
SinI GGWCC 1 cut(s) 1110
SmiMI CAYNNNNRTG 6 cut(s) 332, 825, 927, 982, 1074, 1706
SmlI CTYRAG 2 cut(s) 941, 1715
SmoI CTYRAG 2 cut(s) 941, 1715
SseBI AGGCCT 1 cut(s) 1697
SsiI CCGC 7 cut(s) 256, 262, 1410, 1526, 1547, 1941, 1968
SspMI CTAG 3 cut(s) 603, 1653, 1802
StuI AGGCCT 1 cut(s) 1697
StyD4I CCNGG 5 cut(s) 1020, 1113, 1230, 1557, 1983
TaaI ACNGT 4 cut(s) 376, 584, 842, 1383
TaiI ACGT 2 cut(s) 1472, 1907
TaqI TCGA 3 cut(s) 280, 332, 1730
TaqII GACCGA 2 cut(s) 585, 1752
TauI GCSGC 1 cut(s) 1412
TfiI GAWTC 6 cut(s) 641, 650, 1235, 1241, 1759, 1871
Tru1I TTAA 3 cut(s) 99, 179, 831
Tru9I TTAA 3 cut(s) 99, 179, 831
TscAI CASTG 3 cut(s) 796, 865, 1354
TseFI GTSAC 3 cut(s) 29, 1563, 1892
TseI GCWGC 4 cut(s) 438, 441, 599, 1528
Tsp45I GTSAC 3 cut(s) 29, 1563, 1892
TspDTI ATGAA 9 cut(s) 17, 528, 663, 912, 1119, 1194, 1440, 1494, 1685
TspGWI ACGGA 1 cut(s) 1346
TspRI CASTG 3 cut(s) 796, 865, 1354
Van91I CCANNNNNTGG 1 cut(s) 1120
VneI GTGCAC 1 cut(s) 1900
VpaK11BI GGWCC 1 cut(s) 1110
XapI RAATTY 3 cut(s) 138, 952, 1839
XceI RCATGY 3 cut(s) 1073, 1597, 1900
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 3 cut(s) 603, 1653, 1802
Zsp2I ATGCAT 1 cut(s) 1599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.