Rh5BG381700

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003793
Physical Location & Seq
Reverse (-)
60547726 .. 60554244
6519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG381700.1

Sequence Viewer

Length: 2418 bp
ATGGCTATTGCTGGTCTACAAAATGTTTCTGTGCTCGATTCTTCTTTCCTTAGAAGCTCTCAATCTGGTGCATCTAGAAGGGTAGACAATGAAGGGAGGGCACACTCCCGGGCTTCCTCTCTGCTACAAATGTGGCGAGAGCTTGAGGATGAGCATATGGTGAGTCGTCCCCTCGAGAGAGTTGGTGAAAGGTTGTTCCAACAAAGGAGTGATGGAGTTGGTAGCGAGAATACAGGTGACCTGGATGATGCGAGTGTGGCTGAGAGTGAGTGCAGAACATGGTCCCAAGGTCAAATTGGCTTATCCCCTGAACATGATGAATATAGCAATTTTAGCAGTGAGCACTCTTCTGATTTTGGGGACGGTGAAAGGGGGAGGGTGAGACAAATTTTTCAGGAATGGATGAACTGTGGTGCGAGTGAATGTGCATCAAATGTTTCTCATATGAATAACAGTTCAAGGGCAGAGTTGCTTGGTGAAACTGAACAGGAGAGAGTGAGAATTATAAGGGAGTGGGTACGAATGAACAGCCAGCAAAGAGTTGCTTCTGGTGACAATGGAGAAGAACAACCTGCTGACTTTGGTAATCAAATTGCACGAGTTCGTGATGGATTGGTTGTTAACCAAAGTGGAGGCCGGTCTGAGCATAACCGGAGGGGAATTCGTAAATTATGTGGGAGACAAGCTCTACTGGATATGTTAAAGAAGGCTGAGAGGGAAAGGCAAATAGAACTTCAAGTCTTGTCGGAGCACCAGCCCGTAACACGCTTTGCTCACCGCAACCGCATTCAGTCATTGCTTCGAGGAAGATTTTTACGAAATGGTAGAGCCATTGAGAACGAGAGACCCATTTCGATGGCTGAAACTGAATTGGGCTTATTGAGGCAAAGACATACAGTCTCTGGTCTGAGGGATGGTTTTGACTCCAAATTGGATAGTCCTGTTGGTGGTCAAGTAGGCAGCTGCCATTCTGAGTCATCTTCAAGCAATTCTAATGGTATCAGAAGTGGCCATACTCAACCGAACAATTCACATGAAGTCGTTAGTGGTTCTTTTGAGCAGTCTGAGGCTAATGATGTTGCAAGTAATGACCGAGGACACAATAGTTGTGGAACATCAGCTGCTAGGGCTGATTTGGGTGGAAACACCATTCAGGATATAGATTCACATGAATCTAATGCTCCCATAGAACATGGGCAAGAAGAGATTCCTGATAATGTTGTAAGTGGCTGGCAATGCTCATCCTCTATTGAGATTGTTGAAAGTAGAGATGGTGCTTGTCAAAACATGATTGGGAACTTACTTACAACCACTGCTGCTGTGGAGCAGTCCCAAGAAACTTTGCACAATGATGCTAATGACTACAGTAACATTCAAGGAGCCAGTGATTTATCTAATGAGCAATCTGAGCTTGATGGGGATGAAAGTGTCATCCACGAACTCAGTCATGCAGATGGCAATATGCTTGAGGATGTAAATTTTCAAGAGTCCAATTCACAGCCACACCAATGGCTGGATCAAGTTTCAGAAAATGAGGAAGGAGACCAGGTGCAAGCTGATGAGTATAATAGTTTGATAGAAAATGTCGTGGAACATACAGATGAAGATCAGCAGGAAACTGCTGGTTATGAATGGTCCCAGGAGTTGGTAGAGAACGAAGATAGAGAAGATGATCAACTCCAAGAAGTCCCTGAAGTGTGGCACGATGAAAGTGGTTTTCAAGAGGCTGTTCAAAGTTGGTTAGAAGGGCCATCCAGCCAGGATTCCGATTCAGTCAGGCAGGCTGATACCTTTTACTTTCCTGATGATGATAATGCTCATAATACAGAGCTAAGGGAACTTCTAAGCAGGAGAAGGGTCTCTAATCTTCTGAGCAGTGGTTTCCGTCAGAACCTTGATCAACTCATACAGTCATATGTGGAAAGGCAAGGTCATGCCGCCATTGACTGGGATGAAGCATCAGCTTATCCTGAATTGACTGAAGATATGGAGCAGACGTATCAGAATGAAGTTCAAGTGAATGCTGTTGAGAGTCCTCACCTTGCTCTACCACCGCAGCCAATACCTTCCTCTCCGCTGTGGCACCAGGAGTCACCCCATGATAATTGGCCACGACATGACATGCATCAGCGCTTTGGAATTGACTGGGAGATGGTGAACGATATGAGGATTGACATGGCTAGGCTGCAACAGAGGATGAACAACTTGCAAAGGATGTTGGAGGCCTGCATGGATATGCAACTTGAGTTGCAACGATCGATAAGACAAGAAGTTTCTGATGCCTTGAATCGGTCAGCCGGTTCACAAGGGGTGTGTGAAGATGGTCTCCTAGATGATGGGTCTAAATGGGATAATGTAAGGAAAGGAATTTGCTGTATATGTTGTGTTAGCAGTATTGATTCTTTACTATACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

805

Amino Acids

90.47

Weight (kDa)

4.59

Isoelectric Point (pI)

60.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 506
Acc36I ACCTGC 1 cut(s) 580
AccB1I GGYRCC 1 cut(s) 2082
AccB7I CCANNNNNTGG 3 cut(s) 1513, 1645, 1947
AccI GTMKAC 2 cut(s) 16, 84
AciI CCGC 5 cut(s) 778, 784, 1938, 2054, 2075
AclWI GGATC 1 cut(s) 1524
AcoI YGGCCR 2 cut(s) 1009, 2108
AcsI RAATTY 4 cut(s) 387, 660, 1477, 2367
AcuI CTGAAG 2 cut(s) 1713, 2001
AfaI GTAC 1 cut(s) 519
AfeI AGCGCT 1 cut(s) 2132
AfiI CCNNNNNNNGG 5 cut(s) 947, 1513, 1645, 1947, 2289
AhdI GACNNNNNGTC 1 cut(s) 896
AjnI CCWGG 5 cut(s) 240, 1545, 1638, 1758, 2085
AluBI AGCT 9 cut(s) 57, 142, 686, 963, 1121, 1411, 1556, 1831, 1964
AluI AGCT 9 cut(s) 57, 142, 686, 963, 1121, 1411, 1556, 1831, 1964
Alw21I GWGCWC 3 cut(s) 36, 345, 753
Alw26I GTCTC 7 cut(s) 376, 673, 838, 904, 1536, 1864, 2330
AlwI GGATC 1 cut(s) 1524
AlwNI CAGNNNCTG 1 cut(s) 902
Ama87I CYCGRG 2 cut(s) 108, 173
Aor51HI AGCGCT 1 cut(s) 2132
AoxI GGCC 5 cut(s) 634, 1009, 1748, 2108, 2223
ApeKI GCWGC 6 cut(s) 960, 963, 1121, 1316, 2056, 2185
ApoI RAATTY 4 cut(s) 387, 660, 1477, 2367
Asp700I GAANNNNTTC 1 cut(s) 1206
AspLEI GCGC 1 cut(s) 2133
AspS9I GGNCC 3 cut(s) 282, 1635, 1748
AsuC2I CCSGG 2 cut(s) 109, 110
AvaI CYCGRG 2 cut(s) 108, 173
AvaII GGWCC 2 cut(s) 282, 1635
BaeGI GKGCMC 1 cut(s) 103
BalI TGGCCA 2 cut(s) 1011, 2110
BanI GGYRCC 1 cut(s) 2082
BarI GAAGNNNNNNTAC 2 cut(s) 997, 1029
BauI CACGAG 1 cut(s) 597
Bbv12I GWGCWC 3 cut(s) 36, 345, 753
BbvI GCAGC 6 cut(s) 950, 972, 1108, 1303, 2068, 2172
BciT130I CCWGG 5 cut(s) 242, 1547, 1640, 1760, 2087
BclI TGATCA 2 cut(s) 1672, 1897
BcnI CCSGG 2 cut(s) 109, 110
BcoDI GTCTC 7 cut(s) 376, 673, 838, 904, 1536, 1864, 2330
BfaI CTAG 4 cut(s) 75, 1125, 2181, 2330
BfmI CTRYAG 1 cut(s) 1363
BfoI RGCGCY 1 cut(s) 2134
BfuAI ACCTGC 1 cut(s) 580
BisI GCNGC 7 cut(s) 961, 964, 1122, 1317, 1938, 2057, 2186
BlsI GCNGC 7 cut(s) 962, 965, 1123, 1318, 1939, 2058, 2187
Bme1390I CCNGG 7 cut(s) 109, 110, 242, 1547, 1640, 1760, 2087
Bme18I GGWCC 2 cut(s) 282, 1635
BmeRI GACNNNNNGTC 1 cut(s) 896
BmeT110I CYCGRG 2 cut(s) 108, 173
BmgT120I GGNCC 3 cut(s) 282, 1635, 1748
BmiI GGNNCC 4 cut(s) 284, 1381, 1637, 2084
BmrFI CCNGG 7 cut(s) 109, 110, 242, 1547, 1640, 1760, 2087
BmrI ACTGGG 2 cut(s) 1957, 2155
BmsI GCATC 7 cut(s) 80, 238, 437, 1342, 1967, 2134, 2269
BmuI ACTGGG 2 cut(s) 1957, 2155
BplI GAGNNNNNCTC 2 cut(s) 670, 702
Bpu10I CCTNAGC 1 cut(s) 1832
BpuEI CTTGAG 3 cut(s) 164, 1487, 2264
BpuMI CCSGG 2 cut(s) 109, 110
Bsa29I ATCGAT 1 cut(s) 2258
BsaBI GATNNNNATC 1 cut(s) 1605
BsaI GGTCTC 4 cut(s) 838, 1536, 1864, 2330
BsaJI CCNNGG 4 cut(s) 108, 286, 1093, 1638
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 4 cut(s) 1533, 1563, 1982, 2012
Bsc4I CCNNNNNNNGG 5 cut(s) 947, 1513, 1645, 1947, 2289
Bse118I RCCGGY 2 cut(s) 636, 2297
Bse1I ACTGG 4 cut(s) 696, 1383, 1952, 2150
Bse3DI GCAATG 2 cut(s) 794, 1241
Bse8I GATNNNNATC 1 cut(s) 1605
BseBI CCWGG 5 cut(s) 242, 1547, 1640, 1760, 2087
BseCI ATCGAT 1 cut(s) 2258
BseDI CCNNGG 4 cut(s) 108, 286, 1093, 1638
BseJI GATNNNNATC 1 cut(s) 1605
BseLI CCNNNNNNNGG 5 cut(s) 947, 1513, 1645, 1947, 2289
BseMI GCAATG 2 cut(s) 794, 1241
BseMII CTCAG 9 cut(s) 252, 633, 702, 899, 963, 1056, 1398, 1456, 1862
BseNI ACTGG 4 cut(s) 696, 1383, 1952, 2150
BseSI GKGCMC 1 cut(s) 103
BseXI GCAGC 6 cut(s) 950, 972, 1108, 1303, 2068, 2172
BsgI GTGCAG 1 cut(s) 292
Bsh1285I CGRYCG 1 cut(s) 2258
BshFI GGCC 5 cut(s) 636, 1011, 1750, 2110, 2225
BshNI GGYRCC 1 cut(s) 2082
BshVI ATCGAT 1 cut(s) 2258
BsiEI CGRYCG 1 cut(s) 2258
BsiHKAI GWGCWC 3 cut(s) 36, 345, 753
BsiHKCI CYCGRG 2 cut(s) 108, 173
BsiSI CCGG 4 cut(s) 109, 637, 652, 2298
BslFI GGGAC 6 cut(s) 153, 268, 374, 1315, 1621, 1673
BslI CCNNNNNNNGG 5 cut(s) 947, 1513, 1645, 1947, 2289
BsmAI GTCTC 7 cut(s) 376, 673, 838, 904, 1536, 1864, 2330
BsmFI GGGAC 6 cut(s) 153, 268, 374, 1315, 1621, 1673
BsmI GAATGC 2 cut(s) 786, 2026
BsnI GGCC 5 cut(s) 636, 1011, 1750, 2110, 2225
Bso31I GGTCTC 4 cut(s) 838, 1536, 1864, 2330
BsoBI CYCGRG 2 cut(s) 108, 173
Bsp1286I GDGCHC 4 cut(s) 36, 103, 345, 753
Bsp143I GATC 5 cut(s) 1516, 1606, 1672, 1897, 2255
BspACI CCGC 5 cut(s) 778, 784, 1938, 2054, 2075
BspANI GGCC 5 cut(s) 636, 1011, 1750, 2110, 2225
BspCNI CTCAG 9 cut(s) 253, 634, 703, 900, 964, 1057, 1399, 1455, 1863
BspDI ATCGAT 1 cut(s) 2258
BspLI GGNNCC 4 cut(s) 284, 1381, 1637, 2084
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 1 cut(s) 1524
BspT107I GGYRCC 1 cut(s) 2082
BspTNI GGTCTC 4 cut(s) 838, 1536, 1864, 2330
BsrDI GCAATG 2 cut(s) 794, 1241
BsrFI RCCGGY 2 cut(s) 636, 2297
BsrI ACTGG 4 cut(s) 696, 1383, 1952, 2150
BssAI RCCGGY 2 cut(s) 636, 2297
BssECI CCNNGG 4 cut(s) 108, 286, 1093, 1638
BssMI GATC 5 cut(s) 1516, 1606, 1672, 1897, 2255
BssSI CACGAG 1 cut(s) 597
BssT1I CCWWGG 1 cut(s) 286
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 5 cut(s) 242, 1547, 1640, 1760, 2087
Bst4CI ACNGT 6 cut(s) 365, 410, 455, 898, 1367, 1911
Bst6I CTCTTC 2 cut(s) 352, 1197
BstC8I GCNNGC 5 cut(s) 533, 1232, 1554, 1782, 2227
BstEII GGTNACC 1 cut(s) 236
BstH2I RGCGCY 1 cut(s) 2134
BstHHI GCGC 1 cut(s) 2133
BstKTI GATC 5 cut(s) 1519, 1609, 1675, 1900, 2258
BstMAI GTCTC 7 cut(s) 376, 673, 838, 904, 1536, 1864, 2330
BstMBI GATC 5 cut(s) 1516, 1606, 1672, 1897, 2255
BstMCI CGRYCG 1 cut(s) 2258
BstMWI GCNNNNNNNGC 5 cut(s) 257, 333, 1127, 1236, 1408
BstNI CCWGG 5 cut(s) 242, 1547, 1640, 1760, 2087
BstNSI RCATGY 1 cut(s) 2125
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 7 cut(s) 107, 108, 240, 1545, 1638, 1758, 2085
BstSFI CTRYAG 1 cut(s) 1363
BstSLI GKGCMC 1 cut(s) 103
BstV1I GCAGC 6 cut(s) 950, 972, 1108, 1303, 2068, 2172
BstXI CCANNNNNNTGG 2 cut(s) 856, 1509
Bsu15I ATCGAT 1 cut(s) 2258
BsuRI GGCC 5 cut(s) 636, 1011, 1750, 2110, 2225
BsuTUI ATCGAT 1 cut(s) 2258
BtsI GCAGTG 3 cut(s) 343, 1311, 1882
BtsIMutI CAGTG 4 cut(s) 343, 1311, 1390, 1882
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 5 cut(s) 533, 1232, 1554, 1782, 2227
CaiI CAGNNNCTG 1 cut(s) 902
CfoI GCGC 1 cut(s) 2133
Cfr10I RCCGGY 2 cut(s) 636, 2297
Cfr13I GGNCC 3 cut(s) 282, 1635, 1748
Cfr9I CCCGGG 1 cut(s) 108
ClaI ATCGAT 1 cut(s) 2258
CsiI ACCWGGT 1 cut(s) 1545
Csp6I GTAC 1 cut(s) 518
CspCI CAANNNNNGTGG 2 cut(s) 1090, 1125
CviQI GTAC 1 cut(s) 518
DpnI GATC 5 cut(s) 1518, 1608, 1674, 1899, 2257
DpnII GATC 5 cut(s) 1516, 1606, 1672, 1897, 2255
DriI GACNNNNNGTC 1 cut(s) 896
EaeI YGGCCR 2 cut(s) 1009, 2108
Eam1104I CTCTTC 2 cut(s) 352, 1197
Eam1105I GACNNNNNGTC 1 cut(s) 896
EarI CTCTTC 2 cut(s) 352, 1197
Eco130I CCWWGG 1 cut(s) 286
Eco147I AGGCCT 1 cut(s) 2225
Eco31I GGTCTC 4 cut(s) 838, 1536, 1864, 2330
Eco47I GGWCC 2 cut(s) 282, 1635
Eco47III AGCGCT 1 cut(s) 2132
Eco57I CTGAAG 2 cut(s) 1713, 2001
Eco88I CYCGRG 2 cut(s) 108, 173
Eco91I GGTNACC 1 cut(s) 236
EcoO65I GGTNACC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 660
EcoRII CCWGG 5 cut(s) 240, 1545, 1638, 1758, 2085
EcoT14I CCWWGG 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 2127
ErhI CCWWGG 1 cut(s) 286
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FaqI GGGAC 6 cut(s) 153, 268, 374, 1315, 1621, 1673
FauNDI CATATG 3 cut(s) 156, 444, 1915
FbaI TGATCA 2 cut(s) 1672, 1897
FblI GTMKAC 2 cut(s) 16, 84
Fnu4HI GCNGC 7 cut(s) 961, 964, 1122, 1317, 1938, 2057, 2186
Fsp4HI GCNGC 7 cut(s) 961, 964, 1122, 1317, 1938, 2057, 2186
FspBI CTAG 4 cut(s) 75, 1125, 2181, 2330
GlaI GCGC 1 cut(s) 2132
GluI GCNGC 7 cut(s) 961, 964, 1122, 1317, 1938, 2057, 2186
HaeII RGCGCY 1 cut(s) 2134
HaeIII GGCC 5 cut(s) 636, 1011, 1750, 2110, 2225
HapII CCGG 4 cut(s) 109, 637, 652, 2298
HhaI GCGC 1 cut(s) 2133
Hin6I GCGC 1 cut(s) 2131
HinP1I GCGC 1 cut(s) 2131
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HpaI GTTAAC 1 cut(s) 622
HpaII CCGG 4 cut(s) 109, 637, 652, 2298
Hpy166II GTNNAC 5 cut(s) 17, 85, 622, 2158, 2303
Hpy8I GTNNAC 5 cut(s) 17, 85, 622, 2158, 2303
HpyAV CCTTC 7 cut(s) 72, 86, 700, 1532, 1739, 1848, 2076
HpyCH4III ACNGT 6 cut(s) 365, 410, 455, 898, 1367, 1911
HpyCH4IV ACGT 1 cut(s) 1997
HpyF10VI GCNNNNNNNGC 5 cut(s) 257, 333, 1127, 1236, 1408
HpySE526I ACGT 1 cut(s) 1997
HspAI GCGC 1 cut(s) 2131
Ksp22I TGATCA 2 cut(s) 1672, 1897
KspAI GTTAAC 1 cut(s) 622
Kzo9I GATC 5 cut(s) 1516, 1606, 1672, 1897, 2255
LmnI GCTCC 5 cut(s) 748, 1186, 1324, 1379, 1990
Lsp1109I GCAGC 6 cut(s) 950, 972, 1108, 1303, 2068, 2172
LweI GCATC 7 cut(s) 80, 238, 437, 1342, 1967, 2134, 2269
MabI ACCWGGT 1 cut(s) 1545
MaeI CTAG 4 cut(s) 75, 1125, 2181, 2330
MaeII ACGT 1 cut(s) 1997
MaeIII GTNAC 5 cut(s) 236, 551, 760, 1367, 2091
MalI GATC 5 cut(s) 1518, 1608, 1674, 1899, 2257
MboI GATC 5 cut(s) 1516, 1606, 1672, 1897, 2255
MhlI GDGCHC 4 cut(s) 36, 103, 345, 753
MlsI TGGCCA 2 cut(s) 1011, 2110
MluNI TGGCCA 2 cut(s) 1011, 2110
MlyI GAGTC 6 cut(s) 172, 917, 983, 1496, 2041, 2099
MmeI TCCRAC 3 cut(s) 223, 726, 2199
Mox20I TGGCCA 2 cut(s) 1011, 2110
Mph1103I ATGCAT 1 cut(s) 2127
MroXI GAANNNNTTC 1 cut(s) 1206
MscI TGGCCA 2 cut(s) 1011, 2110
MseI TTAA 2 cut(s) 621, 701
MslI CAYNNNNRTG 6 cut(s) 854, 1350, 1452, 1507, 1599, 2234
Msp20I TGGCCA 2 cut(s) 1011, 2110
MspA1I CMGCKG 3 cut(s) 963, 1121, 2077
MspI CCGG 4 cut(s) 109, 637, 652, 2298
MspR9I CCNGG 7 cut(s) 109, 110, 242, 1547, 1640, 1760, 2087
Mva1269I GAATGC 2 cut(s) 786, 2026
MvaI CCWGG 5 cut(s) 242, 1547, 1640, 1760, 2087
MwoI GCNNNNNNNGC 5 cut(s) 257, 333, 1127, 1236, 1408
NciI CCSGG 2 cut(s) 109, 110
NdeI CATATG 3 cut(s) 156, 444, 1915
NdeII GATC 5 cut(s) 1516, 1606, 1672, 1897, 2255
NlaIV GGNNCC 4 cut(s) 284, 1381, 1637, 2084
NmuCI GTSAC 3 cut(s) 236, 551, 2091
NsiI ATGCAT 1 cut(s) 2127
NspI RCATGY 1 cut(s) 2125
PaeR7I CTCGAG 1 cut(s) 173
PceI AGGCCT 1 cut(s) 2225
PctI GAATGC 2 cut(s) 786, 2026
PdmI GAANNNNTTC 1 cut(s) 1206
PfeI GAWTC 8 cut(s) 38, 1163, 1172, 1207, 1763, 1769, 2287, 2399
PflMI CCANNNNNTGG 3 cut(s) 1513, 1645, 1947
PkrI GCNGC 7 cut(s) 962, 965, 1123, 1318, 1939, 2058, 2187
Ple19I CGATCG 1 cut(s) 2258
PleI GAGTC 6 cut(s) 171, 917, 982, 1495, 2040, 2098
PpsI GAGTC 6 cut(s) 171, 917, 982, 1495, 2040, 2098
PsiI TTATAA 1 cut(s) 506
Psp6I CCWGG 5 cut(s) 240, 1545, 1638, 1758, 2085
PspEI GGTNACC 1 cut(s) 236
PspGI CCWGG 5 cut(s) 240, 1545, 1638, 1758, 2085
PspN4I GGNNCC 4 cut(s) 284, 1381, 1637, 2084
PspPI GGNCC 3 cut(s) 282, 1635, 1748
PstNI CAGNNNCTG 1 cut(s) 902
PvuI CGATCG 1 cut(s) 2258
PvuII CAGCTG 2 cut(s) 963, 1121
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
RseI CAYNNNNRTG 6 cut(s) 854, 1350, 1452, 1507, 1599, 2234
SaqAI TTAA 2 cut(s) 621, 701
SatI GCNGC 7 cut(s) 961, 964, 1122, 1317, 1938, 2057, 2186
Sau3AI GATC 5 cut(s) 1516, 1606, 1672, 1897, 2255
Sau96I GGNCC 3 cut(s) 282, 1635, 1748
SchI GAGTC 6 cut(s) 172, 917, 983, 1496, 2041, 2099
ScrFI CCNGG 7 cut(s) 109, 110, 242, 1547, 1640, 1760, 2087
SduI GDGCHC 4 cut(s) 36, 103, 345, 753
SexAI ACCWGGT 1 cut(s) 1545
SfaNI GCATC 7 cut(s) 80, 238, 437, 1342, 1967, 2134, 2269
SfcI CTRYAG 1 cut(s) 1363
Sfr274I CTCGAG 1 cut(s) 173
SinI GGWCC 2 cut(s) 282, 1635
SlaI CTCGAG 1 cut(s) 173
SmaI CCCGGG 1 cut(s) 110
SmiMI CAYNNNNRTG 6 cut(s) 854, 1350, 1452, 1507, 1599, 2234
SmlI CTYRAG 4 cut(s) 143, 173, 1466, 2243
SmoI CTYRAG 4 cut(s) 143, 173, 1466, 2243
SseBI AGGCCT 1 cut(s) 2225
SsiI CCGC 5 cut(s) 778, 784, 1938, 2054, 2075
SspMI CTAG 4 cut(s) 75, 1125, 2181, 2330
StuI AGGCCT 1 cut(s) 2225
StyD4I CCNGG 7 cut(s) 107, 108, 240, 1545, 1638, 1758, 2085
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 6 cut(s) 365, 410, 455, 898, 1367, 1911
TaiI ACGT 1 cut(s) 2000
TaqI TCGA 5 cut(s) 36, 174, 802, 854, 2258
TaqII GACCGA 2 cut(s) 1107, 2280
TauI GCSGC 1 cut(s) 1940
TfiI GAWTC 8 cut(s) 38, 1163, 1172, 1207, 1763, 1769, 2287, 2399
Tru1I TTAA 2 cut(s) 621, 701
Tru9I TTAA 2 cut(s) 621, 701
TscAI CASTG 4 cut(s) 343, 1318, 1390, 1882
TseFI GTSAC 3 cut(s) 236, 551, 2091
TseI GCWGC 6 cut(s) 960, 963, 1121, 1316, 2056, 2185
Tsp45I GTSAC 3 cut(s) 236, 551, 2091
TspGWI ACGGA 1 cut(s) 1874
TspMI CCCGGG 1 cut(s) 108
TspRI CASTG 4 cut(s) 343, 1318, 1390, 1882
Van91I CCANNNNNTGG 3 cut(s) 1513, 1645, 1947
VpaK11BI GGWCC 2 cut(s) 282, 1635
XapI RAATTY 4 cut(s) 387, 660, 1477, 2367
XbaI TCTAGA 1 cut(s) 74
XceI RCATGY 1 cut(s) 2125
XcmI CCANNNNNNNNNTGG 2 cut(s) 293, 1318
XhoI CTCGAG 1 cut(s) 173
XmaI CCCGGG 1 cut(s) 108
XmiI GTMKAC 2 cut(s) 16, 84
XmnI GAANNNNTTC 1 cut(s) 1206
XspI CTAG 4 cut(s) 75, 1125, 2181, 2330
Zsp2I ATGCAT 1 cut(s) 2127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.