AT2G27950

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003793
Physical Location & Seq
Reverse (-)
11899160 .. 11904062
4903 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27950.1

Sequence Viewer

Length: 2520 bp
ATGGCTATCGCTGGTCTGCAAAATATTTTGGTGATCGATTCATCTTTCCGTCGGGACTCTGAGGTTCAGGCGACTAGACAAAGGGAAAATGAGGGAAGGTCAAGCGTCCGGGCATCCTCACTCCTACAGATGTGGAGGGAACTTGAGGATGATCATGTGATGGGTCATGCTCGTGAGAGAGATGGTGAGAGGAGGAGTGTTTCTTCACCATCTAATACTATGAGGGGAAATGGTTGTGACAGTAATATTAGTGCACATGATATTGTTAGAGATAGTGTTAATCTGGGTGAGAATGAACTTGGTGGATGGTCTCCCACCCAGAGTCATGTTGGGTCACATAACTCGAGTGAGGATCTCGGCCCTTTTCAGAGCGAGCATTTTTCTGATCTGGGGATGGGTGAAAGGGAAAGAGTTAGACAGATTTTTCGTGAGTGGACGAGCTCTGGGACAGGTCAGCATACTGATTCTGCTTCCCAAGCAACCAACAGCTCAAGAGCAGAATGGCTTGGTGAAACTGAACAAGAAAGGGTGAGGATCATAAGGGAGATGGTTCAGATGAATAGCCAGCAGAGGCCTGCTCTTGGTGATCTCAGGGAAGAACAACCTATTGAAGGTGCTAATCAGATTGAAAGAGTACTTGATGGAATAGTTGTTAATCCAAACAGCATCCAGAATGAACATGCTAGAAGAGGCATACGCAAGTTGTGTGGTAGGCAAGTGTGGGTGGATATGTTAAAAATGGCTGAGATGGAAAGGCAAAGAGAGCTGGAGGGATTGATGCAGCATCATGCAGTATCAAACTTCGCTCATCGCAACCGCATTCAGGCATTGCTAAGGGGGAGATTCTTGCGAAATGGTGACAACGATGATAAAGAGAAACCAACATCATCTGCAGCCACTGAGTTGGGCTTTCTAAGAGAGAGGCACACTGTATCTGAGCTGAGGGAGGAATTTATATCCAGACTGGACCGGTCTGCCTCTGGTCAAGCGAGCAGTAGTCACTCTGAGACCTCATCAAATGCTGAAACTGATCATAATAGAGGTGAACAAAACGACCTGAATTGTCTAGATAGCATCAATGATGCAGACGGTGGTTCAGATCAAAATGGCCGAGAGGCTGACAACCAAAGTTCACTGGATGAGATAACTAACTCTGGACGGTGTTGTAGCCGGAGCACAAGTTTGGAAGAAAGGACTGCACGTGTAGAAGGCTGGCAACGGTCAGAAATTGATGATTTTTCTCAAAGAAGAAATGATACGGAAGTGGACCTGAATGCTACTGGGTGTTCATCCTCTTCAATTCATGGAGATGAGATCAGATACGGTTGTCAATTACGAGAAACTATCGAGATACCCTATGAACAGTCTCTGCAAATTTCTGAAGAAATTGCCACCATGGGACCGATAAACCGGACAACAAATTTCCAGGAGAATCTGGGCGAAAGCATTAACCTAACTGTCACTCTAGAGGAACAAACCGTGGAGCAGATGGAAAACGAAGAATCCGATTGGCAACTTATCAATGGTGCAACCAGTGCATGGAGAGATGACGCTGAAGAGGAGGCAGATACAGATGTTCCTGAGAATTTTCCAAATCAGTTATCCCAGTTATCATCTGTGGACGAGGACAGAGAAGCCAACATACTCGGGGAACTCACAGAGATGCAGCCTGATGATGATGCTGCATCTCTTCAAAGCACAATACAAGACTGGTCAGAGGAACATTCTGATCAGGACACAGTTTCAATGGGAAGGGCTACCACATTCTTTCCTCCGGATGATGGTAATGAGAACAACATGGAACTCAGAGAACTCTCGAGCAGGAGACGTGTCTCAAATCTTCTGCAGAGCGGGTTTAGGGAAAATCTTAGCCAGTTGATACAATCTTACATGGACAGACGAAGCCAAAATCCTGTCGACTGGGAAGAAGCCGAGACTTATTCTGACCATACAATAGTAGGTGAAGATACCGAACAGCAGGATGATGCTCAGAGTGGTGGTCAAGAACTTGATGCTGTTGAATCTCCTCCTTTGACTCTACCCTCCCCAGTCATCCCTATTCAGCCACGGTGGGACCATGATCGATCCCATTCAAACTGGCCGGCACATGATTTGCATCAGGGCATTGGAATGGATTGGGATTCGATCAACGATTTGAGGGTTGACATGGGTAGAATACAGCAAAGGATGGATAACCTGCAGAGGATGCTAGAGGCTTGCATGGAAATGCAACTCGAGTTACAACGGTCCATAAGACAAGAGGTCTCTGCTGCGATGCACCGCTCTACTGACCAACCAGGTCCATCCAAGGACACTGCGAGTTACGAGTCAAAATGGGAATATGTAAGGAAAGGGATCTGCTGCGTATGCTGCGAGAGCAATATTGACTCTTTATTGTATAGATGTGGACATATGAACACCTGCGAGAAGTGTGCAAAGAAGCTAGTGGAAGCGGGAGGAAAATGTCCCATGTGTCAAGCCCCTGTGATTGAGGTAGTTCGTGCTTACTCTATTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

839

Amino Acids

94.77

Weight (kDa)

4.67

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 785 - 831 3.2e-10 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2429
Acc36I ACCTGC 2 cut(s) 2205, 2429
AccB7I CCANNNNNTGG 1 cut(s) 1539
AccBSI CCGCTC 2 cut(s) 1851, 2283
AccI GTMKAC 1 cut(s) 1917
AccIII TCCGGA 1 cut(s) 1774
AciI CCGC 4 cut(s) 817, 1851, 2281, 2453
AclWI GGATC 4 cut(s) 360, 542, 2079, 2363
AcoI YGGCCR 2 cut(s) 1108, 2099
AcsI RAATTY 4 cut(s) 950, 1374, 1420, 1585
AcuI CTGAAG 2 cut(s) 1401, 1575
AcvI CACGTG 1 cut(s) 1202
AfaI GTAC 1 cut(s) 636
AfiI CCNNNNNNNGG 5 cut(s) 581, 611, 823, 1539, 1781
AflIII ACRYGT 2 cut(s) 1201, 1828
AgeI ACCGGT 1 cut(s) 969
AgsI TTSAA 7 cut(s) 611, 629, 1299, 1694, 1746, 2021, 2094
AhdI GACNNNNNGTC 1 cut(s) 2261
AjiI CACGTC 1 cut(s) 1829
AjnI CCWGG 2 cut(s) 1425, 2296
AluBI AGCT 5 cut(s) 441, 489, 766, 940, 2443
AluI AGCT 5 cut(s) 441, 489, 766, 940, 2443
Alw21I GWGCWC 3 cut(s) 256, 443, 1178
Alw26I GTCTC 7 cut(s) 315, 1001, 1371, 1819, 1837, 1928, 2269
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 4 cut(s) 360, 542, 2079, 2363
AlwNI CAGNNNCTG 2 cut(s) 899, 1369
Ama87I CYCGRG 4 cut(s) 343, 1646, 1816, 2234
Aor13HI TCCGGA 1 cut(s) 1774
AoxI GGCC 4 cut(s) 358, 572, 1108, 2099
ApaLI GTGCAC 1 cut(s) 252
ApeKI GCWGC 7 cut(s) 781, 893, 1666, 1682, 2270, 2361, 2370
ApoI RAATTY 4 cut(s) 950, 1374, 1420, 1585
ArsI GACNNNNNNTTYG 2 cut(s) 408, 440
AsiGI ACCGGT 1 cut(s) 969
AspS9I GGNCC 7 cut(s) 359, 967, 1267, 1400, 2074, 2247, 2300
AsuC2I CCSGG 1 cut(s) 110
AvaI CYCGRG 4 cut(s) 343, 1646, 1816, 2234
AvaII GGWCC 6 cut(s) 967, 1267, 1400, 2074, 2247, 2300
BaeGI GKGCMC 1 cut(s) 256
BaeI ACNNNNGTAYC 6 cut(s) 1248, 1281, 1312, 1345, 1560, 1593
BanII GRGCYC 1 cut(s) 443
BarI GAAGNNNNNNTAC 4 cut(s) 1240, 1272, 1626, 1658
BauI CACGAG 1 cut(s) 171
BbrPI CACGTG 1 cut(s) 1202
Bbv12I GWGCWC 3 cut(s) 256, 443, 1178
BbvCI CCTCAGC 1 cut(s) 941
BbvI GCAGC 7 cut(s) 793, 905, 1669, 1678, 2257, 2348, 2357
BcgI CGANNNNNNTGC 2 cut(s) 2414, 2448
BciT130I CCWGG 2 cut(s) 1427, 2298
BclI TGATCA 3 cut(s) 151, 1030, 1729
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 7 cut(s) 315, 1001, 1371, 1819, 1837, 1928, 2269
BfaI CTAG 6 cut(s) 75, 684, 1067, 1466, 2210, 2444
BfmI CTRYAG 4 cut(s) 125, 891, 1844, 2198
BfuAI ACCTGC 2 cut(s) 2205, 2429
BisI GCNGC 7 cut(s) 782, 894, 1667, 1683, 2271, 2362, 2371
BlsI GCNGC 7 cut(s) 783, 895, 1668, 1684, 2272, 2363, 2372
BmcAI AGTACT 1 cut(s) 636
Bme1390I CCNGG 3 cut(s) 110, 1427, 2298
Bme18I GGWCC 6 cut(s) 967, 1267, 1400, 2074, 2247, 2300
BmeRI GACNNNNNGTC 1 cut(s) 2261
BmeT110I CYCGRG 4 cut(s) 343, 1646, 1816, 2234
BmgBI CACGTC 1 cut(s) 1829
BmgT120I GGNCC 7 cut(s) 359, 967, 1267, 1400, 2074, 2247, 2300
BmiI GGNNCC 2 cut(s) 1401, 2075
BmrFI CCNGG 3 cut(s) 110, 1427, 2298
BmrI ACTGGG 4 cut(s) 1290, 1600, 1930, 2042
BmuI ACTGGG 4 cut(s) 1290, 1600, 1930, 2042
BplI GAGNNNNNCTC 2 cut(s) 562, 594
BpmI CTGGAG 1 cut(s) 788
Bpu10I CCTNAGC 2 cut(s) 833, 941
BpuEI CTTGAG 2 cut(s) 164, 475
BpuMI CCSGG 1 cut(s) 110
Bsa29I ATCGAT 2 cut(s) 36, 2083
BsaAI YACGTR 1 cut(s) 1202
BsaBI GATNNNNATC 1 cut(s) 2115
BsaI GGTCTC 3 cut(s) 315, 1001, 2269
BsaJI CCNNGG 4 cut(s) 1395, 1479, 2066, 2307
BsaWI WCCGGW 3 cut(s) 969, 1410, 1774
BsaXI ACNNNNNCTCC 2 cut(s) 1165, 1195
Bsc4I CCNNNNNNNGG 5 cut(s) 581, 611, 823, 1539, 1781
Bse118I RCCGGY 2 cut(s) 969, 2101
Bse3DI GCAATG 1 cut(s) 827
Bse8I GATNNNNATC 1 cut(s) 2115
BseAI TCCGGA 1 cut(s) 1774
BseBI CCWGG 2 cut(s) 1427, 2298
BseCI ATCGAT 2 cut(s) 36, 2083
BseDI CCNNGG 4 cut(s) 1395, 1479, 2066, 2307
BseJI GATNNNNATC 1 cut(s) 2115
BseLI CCNNNNNNNGG 5 cut(s) 581, 611, 823, 1539, 1781
BseMI GCAATG 1 cut(s) 827
BseRI GAGGAG 4 cut(s) 205, 208, 1574, 2016
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 7 cut(s) 793, 905, 1669, 1678, 2257, 2348, 2357
BsgI GTGCAG 1 cut(s) 1182
BshFI GGCC 4 cut(s) 360, 574, 1110, 2101
BshTI ACCGGT 1 cut(s) 969
BshVI ATCGAT 2 cut(s) 36, 2083
BsiHKAI GWGCWC 3 cut(s) 256, 443, 1178
BsiHKCI CYCGRG 4 cut(s) 343, 1646, 1816, 2234
BsiSI CCGG 6 cut(s) 109, 970, 1171, 1411, 1775, 2102
BslFI GGGAC 5 cut(s) 68, 460, 1413, 2087, 2451
BslI CCNNNNNNNGG 5 cut(s) 581, 611, 823, 1539, 1781
BsmAI GTCTC 7 cut(s) 315, 1001, 1371, 1819, 1837, 1928, 2269
BsmBI CGTCTC 1 cut(s) 1819
BsmFI GGGAC 5 cut(s) 68, 460, 1413, 2087, 2451
BsmI GAATGC 2 cut(s) 819, 1279
BsnI GGCC 4 cut(s) 360, 574, 1110, 2101
Bso31I GGTCTC 3 cut(s) 315, 1001, 2269
BsoBI CYCGRG 4 cut(s) 343, 1646, 1816, 2234
Bsp1286I GDGCHC 3 cut(s) 256, 443, 1178
Bsp13I TCCGGA 1 cut(s) 1774
Bsp19I CCATGG 1 cut(s) 1395
BspACI CCGC 4 cut(s) 817, 1851, 2281, 2453
BspANI GGCC 4 cut(s) 360, 574, 1110, 2101
BspDI ATCGAT 2 cut(s) 36, 2083
BspEI TCCGGA 1 cut(s) 1774
BspLI GGNNCC 2 cut(s) 1401, 2075
BspMAI CTGCAG 3 cut(s) 895, 1848, 2202
BspMI ACCTGC 2 cut(s) 2205, 2429
BspPI GGATC 4 cut(s) 360, 542, 2079, 2363
BspTNI GGTCTC 3 cut(s) 315, 1001, 2269
BsrBI CCGCTC 2 cut(s) 1851, 2283
BsrDI GCAATG 1 cut(s) 827
BsrFI RCCGGY 2 cut(s) 969, 2101
BssAI RCCGGY 2 cut(s) 969, 2101
BssECI CCNNGG 4 cut(s) 1395, 1479, 2066, 2307
BssSI CACGAG 1 cut(s) 171
BssT1I CCWWGG 2 cut(s) 1395, 2307
Bst2BI CACGAG 1 cut(s) 171
Bst2UI CCWGG 2 cut(s) 1427, 2298
Bst6I CTCTTC 4 cut(s) 682, 1300, 1551, 1695
BstAPI GCANNNNNTGC 2 cut(s) 1535, 2206
BstBAI YACGTR 1 cut(s) 1202
BstC8I GCNNGC 7 cut(s) 374, 566, 576, 991, 1214, 2103, 2218
BstDSI CCRYGG 3 cut(s) 1395, 1479, 2066
BstENI CCTNNNNNAGG 1 cut(s) 609
BstMAI GTCTC 7 cut(s) 315, 1001, 1371, 1819, 1837, 1928, 2269
BstMWI GCNNNNNNNGC 7 cut(s) 476, 763, 1535, 2206, 2367, 2370, 2376
BstNI CCWGG 2 cut(s) 1427, 2298
BstNSI RCATGY 1 cut(s) 683
BstSCI CCNGG 3 cut(s) 108, 1425, 2296
BstSFI CTRYAG 4 cut(s) 125, 891, 1844, 2198
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 7 cut(s) 793, 905, 1669, 1678, 2257, 2348, 2357
BstX2I RGATCY 2 cut(s) 352, 2355
BstXI CCANNNNNNTGG 1 cut(s) 904
BstYI RGATCY 2 cut(s) 352, 2355
Bsu15I ATCGAT 2 cut(s) 36, 2083
BsuRI GGCC 4 cut(s) 360, 574, 1110, 2101
BsuTUI ATCGAT 2 cut(s) 36, 2083
BtgI CCRYGG 3 cut(s) 1395, 1479, 2066
BtgZI GCGATG 2 cut(s) 794, 2288
BtrI CACGTC 1 cut(s) 1829
BtsI GCAGTG 1 cut(s) 2313
BtsIMutI CAGTG 5 cut(s) 897, 927, 1133, 1540, 2313
BveI ACCTGC 2 cut(s) 2205, 2429
Cac8I GCNNGC 7 cut(s) 374, 566, 576, 991, 1214, 2103, 2218
CaiI CAGNNNCTG 2 cut(s) 899, 1369
Cfr10I RCCGGY 2 cut(s) 969, 2101
Cfr13I GGNCC 7 cut(s) 359, 967, 1267, 1400, 2074, 2247, 2300
ClaI ATCGAT 2 cut(s) 36, 2083
CseI GACGC 2 cut(s) 94, 1559
CsiI ACCWGGT 1 cut(s) 2296
Csp6I GTAC 1 cut(s) 635
CspAI ACCGGT 1 cut(s) 969
CspCI CAANNNNNGTGG 2 cut(s) 688, 723
CviQI GTAC 1 cut(s) 635
DriI GACNNNNNGTC 1 cut(s) 2261
EaeI YGGCCR 2 cut(s) 1108, 2099
Eam1104I CTCTTC 4 cut(s) 682, 1300, 1551, 1695
Eam1105I GACNNNNNGTC 1 cut(s) 2261
EarI CTCTTC 4 cut(s) 682, 1300, 1551, 1695
Ecl136II GAGCTC 1 cut(s) 441
Eco130I CCWWGG 2 cut(s) 1395, 2307
Eco147I AGGCCT 1 cut(s) 574
Eco24I GRGCYC 1 cut(s) 443
Eco31I GGTCTC 3 cut(s) 315, 1001, 2269
Eco47I GGWCC 6 cut(s) 967, 1267, 1400, 2074, 2247, 2300
Eco53kI GAGCTC 1 cut(s) 441
Eco57I CTGAAG 2 cut(s) 1401, 1575
Eco72I CACGTG 1 cut(s) 1202
Eco88I CYCGRG 4 cut(s) 343, 1646, 1816, 2234
EcoICRI GAGCTC 1 cut(s) 441
EcoNI CCTNNNNNAGG 1 cut(s) 609
EcoRII CCWGG 2 cut(s) 1425, 2296
EcoT14I CCWWGG 2 cut(s) 1395, 2307
EcoT38I GRGCYC 1 cut(s) 443
ErhI CCWWGG 2 cut(s) 1395, 2307
Esp3I CGTCTC 1 cut(s) 1819
FaqI GGGAC 5 cut(s) 68, 460, 1413, 2087, 2451
FauI CCCGC 2 cut(s) 1844, 2446
FauNDI CATATG 1 cut(s) 2412
FbaI TGATCA 3 cut(s) 151, 1030, 1729
FblI GTMKAC 1 cut(s) 1917
Fnu4HI GCNGC 7 cut(s) 782, 894, 1667, 1683, 2271, 2362, 2371
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 7 cut(s) 782, 894, 1667, 1683, 2271, 2362, 2371
FspBI CTAG 6 cut(s) 75, 684, 1067, 1466, 2210, 2444
GluI GCNGC 7 cut(s) 782, 894, 1667, 1683, 2271, 2362, 2371
GsuI CTGGAG 1 cut(s) 788
HaeIII GGCC 4 cut(s) 360, 574, 1110, 2101
HapII CCGG 6 cut(s) 109, 970, 1171, 1411, 1775, 2102
HgaI GACGC 2 cut(s) 94, 1559
HincII GTYRAC 2 cut(s) 1918, 2164
HindII GTYRAC 2 cut(s) 1918, 2164
HpaII CCGG 6 cut(s) 109, 970, 1171, 1411, 1775, 2102
Hpy166II GTNNAC 9 cut(s) 254, 435, 1046, 1133, 1267, 1621, 1918, 2164, 2408
Hpy8I GTNNAC 9 cut(s) 254, 435, 1046, 1133, 1267, 1621, 1918, 2164, 2408
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 4 cut(s) 90, 605, 1202, 1746
HpyCH4IV ACGT 2 cut(s) 1201, 1828
HpyF10VI GCNNNNNNNGC 7 cut(s) 476, 763, 1535, 2206, 2367, 2370, 2376
HpySE526I ACGT 2 cut(s) 1201, 1828
Kpn2I TCCGGA 1 cut(s) 1774
KroI GCCGGC 1 cut(s) 2101
KroNI GCCGGC 1 cut(s) 2103
Ksp22I TGATCA 3 cut(s) 151, 1030, 1729
LmnI GCTCC 2 cut(s) 1173, 1483
Lsp1109I GCAGC 7 cut(s) 793, 905, 1669, 1678, 2257, 2348, 2357
MabI ACCWGGT 1 cut(s) 2296
MaeI CTAG 6 cut(s) 75, 684, 1067, 1466, 2210, 2444
MaeII ACGT 2 cut(s) 1201, 1828
MaeIII GTNAC 7 cut(s) 236, 333, 857, 998, 1459, 2238, 2321
MbiI CCGCTC 2 cut(s) 1851, 2283
MflI RGATCY 2 cut(s) 352, 2355
MhlI GDGCHC 3 cut(s) 256, 443, 1178
MluCI AATT 9 cut(s) 950, 1060, 1227, 1299, 1331, 1374, 1386, 1420, 1585
MlyI GAGTC 5 cut(s) 50, 331, 2029, 2336, 2381
MroI TCCGGA 1 cut(s) 1774
MroNI GCCGGC 1 cut(s) 2101
MseI TTAA 4 cut(s) 279, 654, 734, 1449
MslI CAYNNNNRTG 5 cut(s) 171, 1308, 1661, 2129, 2225
MspI CCGG 6 cut(s) 109, 970, 1171, 1411, 1775, 2102
MspR9I CCNGG 3 cut(s) 110, 1427, 2298
Mva1269I GAATGC 2 cut(s) 819, 1279
MvaI CCWGG 2 cut(s) 1427, 2298
MwoI GCNNNNNNNGC 7 cut(s) 476, 763, 1535, 2206, 2367, 2370, 2376
NaeI GCCGGC 1 cut(s) 2103
NciI CCSGG 1 cut(s) 110
NcoI CCATGG 1 cut(s) 1395
NdeI CATATG 1 cut(s) 2412
NgoMIV GCCGGC 1 cut(s) 2101
NlaIV GGNNCC 2 cut(s) 1401, 2075
NmeAIII GCCGAG 3 cut(s) 336, 1136, 1957
NmuCI GTSAC 5 cut(s) 236, 333, 857, 998, 1459
NspI RCATGY 1 cut(s) 683
PaeR7I CTCGAG 3 cut(s) 343, 1816, 2234
PaqCI CACCTGC 1 cut(s) 2429
PceI AGGCCT 1 cut(s) 574
PcsI WCGNNNNNNNCGW 1 cut(s) 1503
PctI GAATGC 2 cut(s) 819, 1279
PdiI GCCGGC 1 cut(s) 2103
PfeI GAWTC 7 cut(s) 38, 464, 843, 1432, 1502, 2021, 2141
PflMI CCANNNNNTGG 1 cut(s) 1539
PfoI TCCNGGA 1 cut(s) 1425
PinAI ACCGGT 1 cut(s) 969
PkrI GCNGC 7 cut(s) 783, 895, 1668, 1684, 2272, 2363, 2372
PleI GAGTC 5 cut(s) 50, 330, 2029, 2335, 2381
PmaCI CACGTG 1 cut(s) 1202
PmlI CACGTG 1 cut(s) 1202
PpsI GAGTC 5 cut(s) 50, 330, 2029, 2335, 2381
Ppu21I YACGTR 1 cut(s) 1202
Psp124BI GAGCTC 1 cut(s) 443
Psp6I CCWGG 2 cut(s) 1425, 2296
PspCI CACGTG 1 cut(s) 1202
PspGI CCWGG 2 cut(s) 1425, 2296
PspN4I GGNNCC 2 cut(s) 1401, 2075
PspPI GGNCC 7 cut(s) 359, 967, 1267, 1400, 2074, 2247, 2300
PspXI VCTCGAGB 2 cut(s) 343, 2234
PstI CTGCAG 3 cut(s) 895, 1848, 2202
PstNI CAGNNNCTG 2 cut(s) 899, 1369
PsuI RGATCY 2 cut(s) 352, 2355
RsaI GTAC 1 cut(s) 636
RsaNI GTAC 1 cut(s) 635
RseI CAYNNNNRTG 5 cut(s) 171, 1308, 1661, 2129, 2225
SacI GAGCTC 1 cut(s) 443
SalI GTCGAC 1 cut(s) 1916
SaqAI TTAA 4 cut(s) 279, 654, 734, 1449
SatI GCNGC 7 cut(s) 782, 894, 1667, 1683, 2271, 2362, 2371
Sau96I GGNCC 7 cut(s) 359, 967, 1267, 1400, 2074, 2247, 2300
ScaI AGTACT 1 cut(s) 636
SchI GAGTC 5 cut(s) 50, 331, 2029, 2336, 2381
ScrFI CCNGG 3 cut(s) 110, 1427, 2298
SduI GDGCHC 3 cut(s) 256, 443, 1178
SexAI ACCWGGT 1 cut(s) 2296
SfcI CTRYAG 4 cut(s) 125, 891, 1844, 2198
Sfr274I CTCGAG 3 cut(s) 343, 1816, 2234
SinI GGWCC 6 cut(s) 967, 1267, 1400, 2074, 2247, 2300
SlaI CTCGAG 3 cut(s) 343, 1816, 2234
SmiMI CAYNNNNRTG 5 cut(s) 171, 1308, 1661, 2129, 2225
SmlI CTYRAG 5 cut(s) 143, 343, 490, 1816, 2234
SmoI CTYRAG 5 cut(s) 143, 343, 490, 1816, 2234
Sse9I AATT 9 cut(s) 950, 1060, 1227, 1299, 1331, 1374, 1386, 1420, 1585
SseBI AGGCCT 1 cut(s) 574
SsiI CCGC 4 cut(s) 817, 1851, 2281, 2453
SspI AATATT 3 cut(s) 25, 247, 2383
SspMI CTAG 6 cut(s) 75, 684, 1067, 1466, 2210, 2444
SstI GAGCTC 1 cut(s) 443
StuI AGGCCT 1 cut(s) 574
StyD4I CCNGG 3 cut(s) 108, 1425, 2296
StyI CCWWGG 2 cut(s) 1395, 2307
TaiI ACGT 2 cut(s) 1204, 1831
TaqI TCGA 8 cut(s) 36, 344, 1347, 1817, 1917, 2083, 2144, 2235
TaqII GACCGA 1 cut(s) 1417
TasI AATT 9 cut(s) 950, 1060, 1227, 1299, 1331, 1374, 1386, 1420, 1585
TatI WGTACW 1 cut(s) 634
TfiI GAWTC 7 cut(s) 38, 464, 843, 1432, 1502, 2021, 2141
Tru1I TTAA 4 cut(s) 279, 654, 734, 1449
Tru9I TTAA 4 cut(s) 279, 654, 734, 1449
TscAI CASTG 5 cut(s) 904, 934, 1140, 1540, 2320
TseFI GTSAC 5 cut(s) 236, 333, 857, 998, 1459
TseI GCWGC 7 cut(s) 781, 893, 1666, 1682, 2270, 2361, 2370
Tsp45I GTSAC 5 cut(s) 236, 333, 857, 998, 1459
TspDTI ATGAA 8 cut(s) 30, 309, 572, 690, 1278, 1292, 1374, 2429
TspGWI ACGGA 2 cut(s) 38, 1274
TspRI CASTG 5 cut(s) 904, 934, 1140, 1540, 2320
Van91I CCANNNNNTGG 1 cut(s) 1539
VneI GTGCAC 1 cut(s) 252
VpaK11BI GGWCC 6 cut(s) 967, 1267, 1400, 2074, 2247, 2300
XagI CCTNNNNNAGG 1 cut(s) 609
XapI RAATTY 4 cut(s) 950, 1374, 1420, 1585
XbaI TCTAGA 2 cut(s) 1066, 1465
XceI RCATGY 1 cut(s) 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XhoI CTCGAG 3 cut(s) 343, 1816, 2234
XmiI GTMKAC 1 cut(s) 1917
XspI CTAG 6 cut(s) 75, 684, 1067, 1466, 2210, 2444
ZrmI AGTACT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.