MD11G1150000.v1.1

Belongs to the histone H2B family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017481
Physical Location & Seq
Reverse (-)
14241856 .. 14242671
816 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1150000.v1.1.491

Sequence Viewer

Length: 816 bp
ATGGCTCCAAAGCGCTCGGCGAAGATGGTGGTGAAGACCACCAAGCGAGTCGTGAAAGAAATGGTTGAAGTTTCAGTGGTTAAAACCAGAAGGAAGAAACAACAAGAAGATCGTCCACTGGAGACTATTTCCGTTGAAAACAACGACTCAAATCAAACCCAAAACGTAGAAGTTTCAGTTGGGAAAGAGCCGCTCAAGACTAGTATTATTCCAATTGAAACTTTGGAGCAAGTTATTCCCATTGAAACCCAGGCAGAAAACCAAACCCTAAAAACACAAAACGCTGAAGTCCAAGTCGACAGAGAGGCAGAAGAAAATCCTACGACTCCTGATCCACAAGAAACAGAGAAATTATCGAAGGAAGAAGAGCAGAAGAGTGAGGAGGACAAAACCCTAAGAGGAGGAGAGAACAAGGACGCGGAAGATTTGACGAAAACCGAAGAGCAAGCCTCGAAGAAAGGAGAGAAGAAAAGCGAGGTGAAAGGAGGGAAGAGGAGAGAGAAGAGGAGGAGTAGGGGAAGAGAAGAGTACAAGACATATGTGTATAAGGTTTTGAAGCAGGTGCATCCTGGGATGGGAGTGTCGTCCAAGGCCATGACGGTGTTGAATAACTTGATGAACGACATGTTTGAGAAGCTGGCTGATGAGGCAGCTAGGCTGACTACGTATACAGCGAGGAAGACATTGTCGTCGAGGGAGATTCAAGGGGCGGTGAAGCTGGTTTTGACTGGGGAGCTTGGGAGGCATGCCATGGCGGAGGGGACCAAGGCCGTGAGCACTTATGTTTCATATGGAGGAGGGTCGTCCAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

272

Amino Acids

30.36

Weight (kDa)

9.06

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 160 - 240 2.3e-18 Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF PF00808 181 - 238 2.4e-06 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Histone_ABTB PF26281 193 - 267 3.7e-07 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08170
fragaria_vesca FvH4_3g30460
malus_domestica MD11G1150000.v1.1
prunus_persica Prupe.6G114300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0056411
rosa_laevigata RLG00000035096
rosa_multiflora Rmu_sc0000317.1_g000038
rosa_rugosa Rorug05G0299300
rosa_samantha Rh5AG370200 Rh5BG381400 Rh5BG381600
rosa_wichuraiana Rw5G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 550
AasI GACNNNNNNGTC 1 cut(s) 688
Acc36I ACCTGC 1 cut(s) 550
AccBSI CCGCTC 1 cut(s) 193
AccI GTMKAC 2 cut(s) 297, 668
AccII CGCG 1 cut(s) 419
AciI CCGC 4 cut(s) 191, 419, 710, 755
AclWI GGATC 1 cut(s) 326
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 1 cut(s) 530
AfeI AGCGCT 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 575
AflIII ACRYGT 1 cut(s) 624
AgsI TTSAA 7 cut(s) 68, 137, 218, 245, 556, 607, 704
AhlI ACTAGT 1 cut(s) 200
AjnI CCWGG 2 cut(s) 249, 568
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 4 cut(s) 637, 653, 718, 736
AluI AGCT 4 cut(s) 637, 653, 718, 736
Alw21I GWGCWC 1 cut(s) 779
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 326
Aor51HI AGCGCT 1 cut(s) 14
AoxI GGCC 2 cut(s) 591, 768
ApeKI GCWGC 1 cut(s) 650
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 762
AsuHPI GGTGA 3 cut(s) 43, 490, 724
AvaII GGWCC 1 cut(s) 762
BbsI GAAGAC 2 cut(s) 41, 686
Bbv12I GWGCWC 1 cut(s) 779
BbvI GCAGC 1 cut(s) 662
BccI CCATC 2 cut(s) 19, 568
BceAI ACGGC 1 cut(s) 755
BciT130I CCWGG 2 cut(s) 251, 570
BcoDI GTCTC 1 cut(s) 116
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 2 cut(s) 201, 654
BfoI RGCGCY 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 550
BisI GCNGC 2 cut(s) 191, 651
BlsI GCNGC 2 cut(s) 192, 652
Bme1390I CCNGG 2 cut(s) 251, 570
Bme18I GGWCC 1 cut(s) 762
BmgT120I GGNCC 1 cut(s) 762
BmiI GGNNCC 2 cut(s) 6, 763
BmrFI CCNGG 2 cut(s) 251, 570
BmrI ACTGGG 1 cut(s) 738
BmsI GCATC 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 738
BpiI GAAGAC 2 cut(s) 41, 686
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpmI CTGGAG 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 666
BsaJI CCNNGG 5 cut(s) 249, 569, 588, 750, 765
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse1I ACTGG 2 cut(s) 123, 733
BseBI CCWGG 2 cut(s) 251, 570
BseDI CCNNGG 5 cut(s) 249, 569, 588, 750, 765
BseGI GGATG 2 cut(s) 565, 579
BseLI CCNNNNNNNGG 1 cut(s) 575
BseNI ACTGG 2 cut(s) 123, 733
BseRI GAGGAG 7 cut(s) 395, 414, 417, 508, 520, 523, 810
BseXI GCAGC 1 cut(s) 662
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 2 cut(s) 593, 770
BsiHKAI GWGCWC 1 cut(s) 779
BslFI GGGAC 1 cut(s) 775
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 775
BsnI GGCC 2 cut(s) 593, 770
Bsp1286I GDGCHC 1 cut(s) 779
Bsp143I GATC 2 cut(s) 109, 331
Bsp19I CCATGG 1 cut(s) 750
BspACI CCGC 4 cut(s) 191, 419, 710, 755
BspANI GGCC 2 cut(s) 593, 770
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 2 cut(s) 6, 763
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 1 cut(s) 326
BspQI GCTCTTC 2 cut(s) 360, 435
BsrBI CCGCTC 1 cut(s) 193
BsrI ACTGG 2 cut(s) 123, 733
BssECI CCNNGG 5 cut(s) 249, 569, 588, 750, 765
BssMI GATC 2 cut(s) 109, 331
BssNAI GTATAC 1 cut(s) 669
BssT1I CCWWGG 3 cut(s) 588, 750, 765
Bst1107I GTATAC 1 cut(s) 669
Bst2UI CCWGG 2 cut(s) 251, 570
Bst4CI ACNGT 1 cut(s) 601
Bst6I CTCTTC 7 cut(s) 360, 368, 435, 485, 497, 514, 519
BstBAI YACGTR 1 cut(s) 666
BstC8I GCNNGC 3 cut(s) 447, 639, 747
BstDEI CTNAG 1 cut(s) 395
BstDSI CCRYGG 1 cut(s) 750
BstF5I GGATG 2 cut(s) 565, 579
BstFNI CGCG 1 cut(s) 419
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 2 cut(s) 112, 334
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 109, 331
BstMWI GCNNNNNNNGC 2 cut(s) 647, 742
BstNI CCWGG 2 cut(s) 251, 570
BstNSI RCATGY 2 cut(s) 628, 749
BstSCI CCNGG 2 cut(s) 249, 568
BstSNI TACGTA 1 cut(s) 666
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 1 cut(s) 662
BstV2I GAAGAC 2 cut(s) 41, 686
BstZ17I GTATAC 1 cut(s) 669
BsuRI GGCC 2 cut(s) 593, 770
BtgI CCRYGG 1 cut(s) 750
BtsCI GGATG 2 cut(s) 565, 579
BtsIMutI CAGTG 2 cut(s) 81, 116
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 3 cut(s) 447, 639, 747
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 762
CseI GACGC 1 cut(s) 425
Csp6I GTAC 1 cut(s) 529
CviAII CATG 4 cut(s) 595, 625, 746, 751
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 1 cut(s) 395
DpnI GATC 2 cut(s) 111, 333
DpnII GATC 2 cut(s) 109, 331
DrdI GACNNNNNNGTC 1 cut(s) 688
DseDI GACNNNNNNGTC 1 cut(s) 688
Eam1104I CTCTTC 7 cut(s) 360, 368, 435, 485, 497, 514, 519
EarI CTCTTC 7 cut(s) 360, 368, 435, 485, 497, 514, 519
EciI GGCGGA 1 cut(s) 770
Eco105I TACGTA 1 cut(s) 666
Eco130I CCWWGG 3 cut(s) 588, 750, 765
Eco47I GGWCC 1 cut(s) 762
Eco47III AGCGCT 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 249, 568
EcoT14I CCWWGG 3 cut(s) 588, 750, 765
ErhI CCWWGG 3 cut(s) 588, 750, 765
FaeI CATG 4 cut(s) 598, 628, 749, 754
FaqI GGGAC 1 cut(s) 775
FatI CATG 4 cut(s) 594, 624, 745, 750
FauNDI CATATG 2 cut(s) 538, 790
FblI GTMKAC 2 cut(s) 297, 668
Fnu4HI GCNGC 2 cut(s) 191, 651
FokI GGATG 2 cut(s) 552, 586
Fsp4HI GCNGC 2 cut(s) 191, 651
FspBI CTAG 2 cut(s) 201, 654
GlaI GCGC 1 cut(s) 14
GluI GCNGC 2 cut(s) 191, 651
GsuI CTGGAG 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 2 cut(s) 593, 770
HgaI GACGC 1 cut(s) 425
HhaI GCGC 1 cut(s) 15
Hin1II CATG 4 cut(s) 598, 628, 749, 754
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 4 cut(s) 48, 146, 325, 700
HphI GGTGA 3 cut(s) 43, 490, 724
Hpy166II GTNNAC 3 cut(s) 116, 298, 669
Hpy188III TCNNGA 4 cut(s) 52, 196, 329, 813
Hpy8I GTNNAC 3 cut(s) 116, 298, 669
Hpy99I CGWCG 1 cut(s) 694
HpyAV CCTTC 2 cut(s) 84, 352
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4IV ACGT 2 cut(s) 165, 665
HpyCH4V TGCA 1 cut(s) 565
HpyF10VI GCNNNNNNNGC 2 cut(s) 647, 742
HpyF3I CTNAG 1 cut(s) 395
HpySE526I ACGT 2 cut(s) 165, 665
Hsp92II CATG 4 cut(s) 598, 628, 749, 754
HspAI GCGC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 109, 331
LguI GCTCTTC 2 cut(s) 360, 435
LmnI GCTCC 3 cut(s) 10, 226, 733
Lsp1109I GCAGC 1 cut(s) 662
LweI GCATC 1 cut(s) 574
MaeI CTAG 2 cut(s) 201, 654
MaeII ACGT 2 cut(s) 165, 665
MalI GATC 2 cut(s) 111, 333
MbiI CCGCTC 1 cut(s) 193
MboI GATC 2 cut(s) 109, 331
MfeI CAATTG 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 779
MluCI AATT 2 cut(s) 213, 350
MlyI GAGTC 3 cut(s) 57, 140, 319
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 599
MspR9I CCNGG 2 cut(s) 251, 570
MunI CAATTG 1 cut(s) 213
MvaI CCWGG 2 cut(s) 251, 570
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 647, 742
NcoI CCATGG 1 cut(s) 750
NdeI CATATG 2 cut(s) 538, 790
NdeII GATC 2 cut(s) 109, 331
NlaIII CATG 4 cut(s) 598, 628, 749, 754
NlaIV GGNNCC 2 cut(s) 6, 763
NspI RCATGY 2 cut(s) 628, 749
PaeI GCATGC 1 cut(s) 749
PaqCI CACCTGC 1 cut(s) 550
PciI ACATGT 1 cut(s) 624
PciSI GCTCTTC 2 cut(s) 360, 435
PcsI WCGNNNNNNNCGW 1 cut(s) 671
PfeI GAWTC 1 cut(s) 700
PflFI GACNNNGTC 1 cut(s) 685
PkrI GCNGC 2 cut(s) 192, 652
PleI GAGTC 3 cut(s) 56, 140, 319
PpsI GAGTC 3 cut(s) 56, 140, 319
Ppu21I YACGTR 1 cut(s) 666
PscI ACATGT 1 cut(s) 624
Psp6I CCWGG 2 cut(s) 249, 568
PspGI CCWGG 2 cut(s) 249, 568
PspN4I GGNNCC 2 cut(s) 6, 763
PspPI GGNCC 1 cut(s) 762
PsyI GACNNNGTC 1 cut(s) 685
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
RseI CAYNNNNRTG 1 cut(s) 599
SalI GTCGAC 1 cut(s) 296
SapI GCTCTTC 2 cut(s) 360, 435
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 191, 651
Sau3AI GATC 2 cut(s) 109, 331
Sau96I GGNCC 1 cut(s) 762
SchI GAGTC 3 cut(s) 57, 140, 319
ScrFI CCNGG 2 cut(s) 251, 570
SduI GDGCHC 1 cut(s) 779
SetI ASST 9 cut(s) 168, 480, 552, 564, 639, 655, 668, 720, 738
SfaNI GCATC 1 cut(s) 574
SinI GGWCC 1 cut(s) 762
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SnaBI TACGTA 1 cut(s) 666
SpeI ACTAGT 1 cut(s) 200
SphI GCATGC 1 cut(s) 749
Sse9I AATT 2 cut(s) 213, 350
SsiI CCGC 4 cut(s) 191, 419, 710, 755
SspMI CTAG 2 cut(s) 201, 654
StyD4I CCNGG 2 cut(s) 249, 568
StyI CCWWGG 3 cut(s) 588, 750, 765
TaaI ACNGT 1 cut(s) 601
TaiI ACGT 2 cut(s) 168, 668
TaqI TCGA 4 cut(s) 297, 356, 452, 692
TasI AATT 2 cut(s) 213, 350
TatI WGTACW 1 cut(s) 528
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 1 cut(s) 700
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 2 cut(s) 81, 123
TseI GCWGC 1 cut(s) 650
TspDTI ATGAA 2 cut(s) 632, 777
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 2 cut(s) 81, 123
Tth111I GACNNNGTC 1 cut(s) 685
VpaK11BI GGWCC 1 cut(s) 762
XceI RCATGY 2 cut(s) 628, 749
XmiI GTMKAC 2 cut(s) 297, 668
XspI CTAG 2 cut(s) 201, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.