Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015925

Physical Location & Seq

Genomic Coordinates Reverse (-)

2640803 .. 2641934

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCAGCAACATTTGCAACACCATCGACGGTGATAGGCCTCGGAGGATCATCCATCACCACCAAACCCTTCTCTTCATCCTTTTTAAAACCAACATTAAGCGCCAAGAACCCTTTGAGACTCGCCGGTGCATCGGGAGGAAGAGTCACTTGCTTTGAGAGGAACTGGTTGAGGAGAGATTTGAACGTGGTAGGATTTGGGCTGATCGGATGGCTAGCTCCGTCGAGCATTCCAGCGATAAATGGGAAGAGCCTGACGGGTCTCTTCTTCGATAGCATCGGAACTGAGCTCGCTCACTTCCCGACTCCTCCAGCTCTCACTTCACAGTTCTGGTTGTGGTTGGTTACGTGGCACTTAGGCCTCTTCCTCTGCCTCACTTTCGGACAAATCGGATTCAAGGGCAGGACTGAAGATTACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009521 GO:0009522 GO:0009536 GO:0009579 GO:0009765 GO:0009767 GO:0009768 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0032991 GO:0034357 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044425 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.14

Weight (kDa)

9.78

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsaO_TMD	PF22832	52 - 140	1.2e-44	PsaO transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08380
fragaria_vesca	FvH4_3g25770
malus_domestica	MD03G1150500.v1.1 MD11G1169900.v1.1
prunus_persica	Prupe.6G137400_v2.0.a1
pyrus_communis	pycom03g10460 pycom11g14230
rosa_chinensis	RchiOBHm_Chr5g0046981
rosa_laevigata	RLG00000034456
rosa_multiflora	Rmu_sc0005544.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034440
rosa_rugosa	Rorug05G0233100
rosa_samantha	Rh5BG321400 Rh5CG347500
rosa_wichuraiana	Rw5G029190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	184, 397
AluBI	AGCT	3 cut(s)	218, 289, 314
AluI	AGCT	3 cut(s)	218, 289, 314
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	2 cut(s)	112, 266
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	2 cut(s)	37, 358
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	43, 49
AsuNHI	GCTAGC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	3 cut(s)	31, 62, 204
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BcoDI	GTCTC	2 cut(s)	112, 266
BfaI	CTAG	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmsI	GCATC	2 cut(s)	140, 285
BmtI	GCTAGC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	3 cut(s)	50, 77, 215
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	2 cut(s)	187, 297
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	2 cut(s)	39, 360
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	126
BsmAI	GTCTC	2 cut(s)	112, 266
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	39, 360
Bso31I	GGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	47, 204
BspANI	GGCC	2 cut(s)	39, 360
BspCNI	CTCAG	1 cut(s)	277
BspOI	GCTAGC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	2 cut(s)	47, 204
Bst4CI	ACNGT	2 cut(s)	31, 327
Bst6I	CTCTTC	5 cut(s)	79, 136, 242, 269, 368
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	216, 291
BstDEI	CTNAG	2 cut(s)	285, 355
BstF5I	GGATG	3 cut(s)	50, 77, 215
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	2 cut(s)	50, 207
BstMAI	GTCTC	2 cut(s)	112, 266
BstMBI	GATC	2 cut(s)	47, 204
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	39, 360
BtsCI	GGATG	3 cut(s)	50, 77, 215
Cac8I	GCNNGC	2 cut(s)	216, 291
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	125
CviJI	RGCY	8 cut(s)	39, 202, 214, 218, 252, 289, 314, 360
CviKI_1	RGCY	8 cut(s)	39, 202, 214, 218, 252, 289, 314, 360
DdeI	CTNAG	2 cut(s)	285, 355
DpnI	GATC	2 cut(s)	49, 206
DpnII	GATC	2 cut(s)	47, 204
DraI	TTTAAA	1 cut(s)	87
Eam1104I	CTCTTC	5 cut(s)	79, 136, 242, 269, 368
EarI	CTCTTC	5 cut(s)	79, 136, 242, 269, 368
Ecl136II	GAGCTC	1 cut(s)	289
Eco147I	AGGCCT	2 cut(s)	39, 360
Eco24I	GRGCYC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	291
FalI	AAGNNNNNCTT	2 cut(s)	133, 165
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	3 cut(s)	37, 64, 222
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	39, 360
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	1 cut(s)	104
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	4 cut(s)	120, 144, 304, 393
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	2 cut(s)	43, 49
Hpy188I	TCNGA	5 cut(s)	44, 209, 281, 383, 392
Hpy188III	TCNNGA	2 cut(s)	135, 301
Hpy99I	CGWCG	2 cut(s)	31, 226
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	2 cut(s)	31, 327
HpyCH4IV	ACGT	2 cut(s)	186, 347
HpyCH4V	TGCA	2 cut(s)	17, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	285, 355
HpySE526I	ACGT	2 cut(s)	186, 347
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	47, 204
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	7 cut(s)	139, 151, 246, 266, 316, 324, 388
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	140, 285
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	2 cut(s)	186, 347
MaeIII	GTNAC	2 cut(s)	145, 343
MalI	GATC	2 cut(s)	49, 206
MboI	GATC	2 cut(s)	47, 204
MboII	GAAGA	7 cut(s)	66, 153, 256, 259, 259, 355, 422
MhlI	GDGCHC	1 cut(s)	291
MlyI	GAGTC	3 cut(s)	114, 153, 298
MnlI	CCTC	9 cut(s)	38, 50, 131, 153, 165, 318, 371, 377, 383
MseI	TTAA	2 cut(s)	86, 98
MspI	CCGG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	2 cut(s)	47, 204
NheI	GCTAGC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	145
PceI	AGGCCT	2 cut(s)	39, 360
PciSI	GCTCTTC	1 cut(s)	242
PctI	GAATGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	393
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	114, 152, 298
PpsI	GAGTC	3 cut(s)	114, 152, 298
Ppu21I	YACGTR	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	291
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	86, 98
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	47, 204
SchI	GAGTC	3 cut(s)	114, 153, 298
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	5 cut(s)	189, 220, 291, 316, 350
SfaNI	GCATC	2 cut(s)	140, 285
SgrAI	CRCCGGYG	1 cut(s)	125
SseBI	AGGCCT	2 cut(s)	39, 360
SspMI	CTAG	1 cut(s)	215
SstI	GAGCTC	1 cut(s)	291
StuI	AGGCCT	2 cut(s)	39, 360
TaaI	ACNGT	2 cut(s)	31, 327
TaiI	ACGT	2 cut(s)	189, 350
TaqI	TCGA	3 cut(s)	26, 224, 270
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	2 cut(s)	86, 98
Tru9I	TTAA	2 cut(s)	86, 98
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	210
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.