Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005544.1

Orthogroup ID

OG0015925

Physical Location & Seq

Genomic Coordinates Forward (+)

6921 .. 7479

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005544.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggcgacaagcttcgcaaccgcatccacagtcgtaggcctcggaagctcgctctcgtccaagaggacatgcctctcttcagactttgtgaagcctgttatggttaggaaccctctgaggcaagcaaaagcttctggaggaaggttcacctgcatgagcttccagagtgattggctgaggagggatctgaatgtgatcgggttcgggttgatcggatggttggtgccatcgagcgttccggcgatcgacggcaagagtttgaccgggctcttctttgagagcattggagccgagctcgctcacttccccacacctccagctctcacttcccagttctggtcagtaacactagtctactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009521 GO:0009522 GO:0009536 GO:0009579 GO:0009765 GO:0009767 GO:0009768 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0032991 GO:0034357 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044425 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

12.78

Weight (kDa)

9.59

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08380
fragaria_vesca	FvH4_3g25770
malus_domestica	MD03G1150500.v1.1 MD11G1169900.v1.1
prunus_persica	Prupe.6G137400_v2.0.a1
pyrus_communis	pycom03g10460 pycom11g14230
rosa_chinensis	RchiOBHm_Chr5g0046981
rosa_laevigata	RLG00000034456
rosa_multiflora	Rmu_sc0005544.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034440
rosa_rugosa	Rorug05G0233100
rosa_samantha	Rh5BG321400 Rh5CG347500
rosa_wichuraiana	Rw5G029190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	336
AhlI	ACTAGT	1 cut(s)	349
AluBI	AGCT	6 cut(s)	12, 48, 131, 159, 295, 320
AluI	AGCT	6 cut(s)	12, 48, 131, 159, 295, 320
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	2 cut(s)	270, 297
Bbv12I	GWGCWC	1 cut(s)	297
BbvCI	CCTCAGC	1 cut(s)	176
BccI	CCATC	2 cut(s)	210, 235
BceAI	ACGGC	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	265
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	265
BmiI	GGNNCC	3 cut(s)	110, 225, 289
BmrFI	CCNGG	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	325
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpmI	CTGGAG	2 cut(s)	156, 300
Bpu10I	CCTNAGC	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	2 cut(s)	23, 221
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	107, 167
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	193
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	239, 264
BslI	CCNNNNNNNGG	1 cut(s)	336
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	270, 297
Bsp143I	GATC	4 cut(s)	184, 195, 210, 243
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	108, 168
BspLI	GGNNCC	3 cut(s)	110, 225, 289
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	192
BspQI	GCTCTTC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	4 cut(s)	184, 195, 210, 243
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	2 cut(s)	82, 275
BstC8I	GCNNGC	3 cut(s)	50, 123, 297
BstDEI	CTNAG	2 cut(s)	116, 176
BstF5I	GGATG	2 cut(s)	23, 221
BstKTI	GATC	4 cut(s)	187, 198, 213, 246
BstMBI	GATC	4 cut(s)	184, 195, 210, 243
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 296
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	23, 221
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	3 cut(s)	50, 123, 297
CviAII	CATG	2 cut(s)	69, 154
DdeI	CTNAG	2 cut(s)	116, 176
DpnI	GATC	4 cut(s)	186, 197, 212, 245
DpnII	GATC	4 cut(s)	184, 195, 210, 243
Eam1104I	CTCTTC	2 cut(s)	82, 275
EarI	CTCTTC	2 cut(s)	82, 275
Ecl136II	GAGCTC	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	39
Eco24I	GRGCYC	2 cut(s)	270, 297
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	295
EcoT38I	GRGCYC	2 cut(s)	270, 297
FaeI	CATG	2 cut(s)	72, 157
FaiI	YATR	3 cut(s)	70, 101, 155
FatI	CATG	2 cut(s)	68, 153
FblI	GTMKAC	1 cut(s)	354
FokI	GGATG	2 cut(s)	10, 228
FriOI	GRGCYC	2 cut(s)	270, 297
FspBI	CTAG	1 cut(s)	350
GsuI	CTGGAG	2 cut(s)	156, 300
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	2 cut(s)	239, 264
Hin1II	CATG	2 cut(s)	72, 157
HindIII	AAGCTT	2 cut(s)	10, 129
HpaII	CCGG	2 cut(s)	239, 264
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	147, 355
Hpy188I	TCNGA	5 cut(s)	44, 82, 117, 189, 215
Hpy188III	TCNNGA	2 cut(s)	135, 163
Hpy8I	GTNNAC	2 cut(s)	147, 355
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 296
HpyF3I	CTNAG	2 cut(s)	116, 176
Hsp92II	CATG	2 cut(s)	72, 157
Kzo9I	GATC	4 cut(s)	184, 195, 210, 243
LguI	GCTCTTC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	9 cut(s)	108, 120, 163, 176, 252, 277, 322, 330, 344
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	4 cut(s)	186, 197, 212, 245
MboI	GATC	4 cut(s)	184, 195, 210, 243
MboII	GAAGA	2 cut(s)	69, 262
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	270, 297
MnlI	CCTC	9 cut(s)	50, 57, 83, 111, 123, 131, 171, 174, 324
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	2 cut(s)	239, 264
MspR9I	CCNGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	2 cut(s)	45, 296
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	4 cut(s)	184, 195, 210, 243
NlaIII	CATG	2 cut(s)	72, 157
NlaIV	GGNNCC	3 cut(s)	110, 225, 289
NmeAIII	GCCGAG	1 cut(s)	316
NspI	RCATGY	1 cut(s)	72
PaqCI	CACCTGC	1 cut(s)	158
PceI	AGGCCT	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	275
Ple19I	CGATCG	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	297
PspN4I	GGNNCC	3 cut(s)	110, 225, 289
PsuI	RGATCY	1 cut(s)	184
PvuI	CGATCG	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	297
SapI	GCTCTTC	1 cut(s)	275
Sau3AI	GATC	4 cut(s)	184, 195, 210, 243
ScrFI	CCNGG	1 cut(s)	265
SduI	GDGCHC	2 cut(s)	270, 297
SetI	ASST	9 cut(s)	14, 50, 133, 146, 152, 161, 297, 316, 322
SfaNI	GCATC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	152
SpeI	ACTAGT	1 cut(s)	349
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	297
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	230, 246
XceI	RCATGY	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.