Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007967

Physical Location & Seq

Genomic Coordinates Reverse (-)

24293013 .. 24293766

Gene Structure 754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0233100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTCCTGCAAGTTCTGAATAATTCCTCATCATCAAGCTCAGAATTGCCTGATCTGCTTTCGAACGTACACAACCTCGTACCCTTCAAATTGGAAAACGAAAACTTCTTCGCTTGGAGGTATGTAATAATCACCATTCTCAAGGCTTACAATCTCCTCGGCTACTTGGATGGTTCACTCGAGTGCCCTGAGAAATTCGTTCGAGCCCAGGACGACGATGAAGAAGAATCATCATCAACAACTACTGCACAGATTAATCCAAGCTACGAAATCTGGTGCAGAGAGGATCTAAGAGTAATGATGTTCATCAATGCTACACTGTCAGCAGACGCACTCTGGGGCATGCGCCTAAACTGCCCCACTACGACTAGACAGCTATGGATTCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DIM1

Protein Analysis

130

Amino Acids

14.94

Weight (kDa)

4.46

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_3	PF14244	26 - 63	1.1e-06	gag-polypeptide of LTR copia-type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24730
fragaria_vesca	FvH4_3g25760 FvH4_3g25760 FvH4_3g25760
malus_domestica	MD11G1172800.v1.1
prunus_persica	Prupe.2G099400_v2.0.a1 Prupe.2G099400_v2.0.a1
pyrus_communis	pycom03g10700
rosa_chinensis	RchiOBHm_Chr5g0046911 RchiOBHm_Chr5g0047331
rosa_laevigata	RLG00000034455 RLG00000034491
rosa_multiflora	Rmu_sc0011420.1_g000006 Rmu_sc0012847.1_g000004
rosa_roxburghii	Rroxscaffold_1G00034480
rosa_rugosa	Rorug05G0233000 Rorug05G0233000 Rorug05G0233000 Rorug05G0233100 Rorug05G0236000
rosa_samantha	Rh5AG312100 Rh5BG321100 Rh5DG331700
rosa_wichuraiana	Rw5G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	2 cut(s)	69, 81
AgsI	TTSAA	2 cut(s)	88, 386
AjnI	CCWGG	1 cut(s)	207
AleI	CACNNNNGTG	1 cut(s)	181
AluBI	AGCT	3 cut(s)	39, 264, 376
AluI	AGCT	3 cut(s)	39, 264, 376
AlwI	GGATC	1 cut(s)	294
Ama87I	CYCGRG	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	194
AseI	ATTAAT	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	124
AsuII	TTCGAA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	208
BccI	CCATC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	209
BfaI	CTAG	1 cut(s)	369
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	157, 207
Bse8I	GATNNNNATC	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	157, 207
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	54, 180
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	188
BsgI	GTGCAG	2 cut(s)	231, 298
BsiHKCI	CYCGRG	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	188, 208
Bsp143I	GATC	2 cut(s)	52, 286
BspCNI	CTCAG	2 cut(s)	53, 181
BspPI	GGATC	1 cut(s)	294
BspT104I	TTCGAA	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	157, 207
BssMI	GATC	2 cut(s)	52, 286
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	321
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	3 cut(s)	40, 189, 290
BstF5I	GGATG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	2 cut(s)	55, 289
BstMBI	GATC	2 cut(s)	52, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 354
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	68, 80
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	6 cut(s)	39, 146, 162, 206, 264, 376
CviKI_1	RGCY	6 cut(s)	39, 146, 162, 206, 264, 376
CviQI	GTAC	2 cut(s)	68, 80
DdeI	CTNAG	3 cut(s)	40, 189, 290
DpnI	GATC	2 cut(s)	54, 288
DpnII	GATC	2 cut(s)	52, 286
Eco24I	GRGCYC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	1 cut(s)	346
FaiI	YATR	3 cut(s)	123, 344, 379
FatI	CATG	1 cut(s)	342
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	347
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	227, 382
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	70, 176
Hpy188I	TCNGA	2 cut(s)	18, 43
Hpy8I	GTNNAC	2 cut(s)	70, 176
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	10, 248, 279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 354
HpyF3I	CTNAG	3 cut(s)	40, 189, 290
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	52, 286
LpnPI	CCDG	7 cut(s)	20, 63, 194, 201, 221, 259, 322
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	66
MalI	GATC	2 cut(s)	54, 288
MboI	GATC	2 cut(s)	52, 286
MboII	GAAGA	3 cut(s)	100, 233, 236
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	188, 208
MluCI	AATT	4 cut(s)	22, 44, 89, 194
MnlI	CCTC	5 cut(s)	37, 86, 111, 167, 277
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	55, 354
NdeII	GATC	2 cut(s)	52, 286
NlaIII	CATG	1 cut(s)	346
NmeAIII	GCCGAG	1 cut(s)	138
NspI	RCATGY	1 cut(s)	346
NspV	TTCGAA	1 cut(s)	62
OliI	CACNNNNGTG	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	346
PaeR7I	CTCGAG	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	227, 382
PshBI	ATTAAT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	2 cut(s)	69, 81
RsaNI	GTAC	2 cut(s)	68, 80
RseI	CAYNNNNRTG	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	52, 286
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	188, 208
SetI	ASST	6 cut(s)	41, 69, 78, 122, 266, 378
Sfr274I	CTCGAG	1 cut(s)	179
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	181
SmlI	CTYRAG	2 cut(s)	140, 179
SmoI	CTYRAG	2 cut(s)	140, 179
SphI	GCATGC	1 cut(s)	346
Sse9I	AATT	4 cut(s)	22, 44, 89, 194
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	321
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	3 cut(s)	62, 180, 202
TasI	AATT	4 cut(s)	22, 44, 89, 194
TfiI	GAWTC	2 cut(s)	227, 382
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	324
TspDTI	ATGAA	2 cut(s)	234, 295
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	179
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.