Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007967

Physical Location & Seq

Genomic Coordinates Reverse (-)

18614778 .. 18617876

Gene Structure 3099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGCTACCTGCTGACGACACTGACGAAGAAGGAAGAGGTGGATTCGATCATCAGATCCACCATCGACAAAGTCCTCGTCCTCCGCTTCGGCCGCGCTTCCGATTCCACATCTCTTCTTCTCGACGACGTTCTCGCCAAGTCATCCCGAGACGTCTCCAAGTTCGCCACCGTCGCTCTCGTCGATGTCGATTCCGACGACGTTCAGGTCTACCTCCATTACTTCGACATAACTCTCATTCCCTCCACCGTCTTCTTCTTCAACGCCCACCACATGAAGATGGATTCCGGAACTGCCGATCACACCAAGTGGATCGGCGCCTTTCGGACTAAGCAGGACTTCATTGATGTCGTTGAGGCCATTTTCAGAGGAGCCATGAAAGGGAAGCTCATTGTCAACTGCCCCTTGCCGCCGGAGCGAATTCCGAAGTACCAGTTGTACTTTAAGGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DIM1

Protein Analysis

152

Amino Acids

17.15

Weight (kDa)

6.4

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIM1	PF02966	4 - 137	3.4e-48	Mitosis protein DIM1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24730
fragaria_vesca	FvH4_3g25760 FvH4_3g25760 FvH4_3g25760
malus_domestica	MD11G1172800.v1.1
prunus_persica	Prupe.2G099400_v2.0.a1 Prupe.2G099400_v2.0.a1
pyrus_communis	pycom03g10700
rosa_chinensis	RchiOBHm_Chr5g0046911 RchiOBHm_Chr5g0047331
rosa_laevigata	RLG00000034455 RLG00000034491
rosa_multiflora	Rmu_sc0011420.1_g000006 Rmu_sc0012847.1_g000004
rosa_roxburghii	Rroxscaffold_1G00034480
rosa_rugosa	Rorug05G0233000 Rorug05G0233000 Rorug05G0233000 Rorug05G0233100 Rorug05G0236000
rosa_samantha	Rh5AG312100 Rh5BG321100 Rh5DG331700
rosa_wichuraiana	Rw5G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AatII	GACGTC	1 cut(s)	156
Acc36I	ACCTGC	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	96
AccIII	TCCGGA	1 cut(s)	287
AciI	CCGC	3 cut(s)	85, 94, 410
AclWI	GGATC	2 cut(s)	51, 320
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	420
AcyI	GRCGYC	2 cut(s)	153, 318
AdeI	CACNNNGTG	1 cut(s)	309
AfaI	GTAC	2 cut(s)	431, 440
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	2 cut(s)	6, 388
AluI	AGCT	2 cut(s)	6, 388
Alw26I	GTCTC	2 cut(s)	144, 160
AlwI	GGATC	2 cut(s)	51, 320
Ama87I	CYCGRG	1 cut(s)	147
Aor13HI	TCCGGA	1 cut(s)	287
AoxI	GGCC	2 cut(s)	91, 357
ApoI	RAATTY	1 cut(s)	420
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspLEI	GCGC	2 cut(s)	98, 320
AvaI	CYCGRG	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	244
BccI	CCATC	2 cut(s)	71, 274
BcoDI	GTCTC	2 cut(s)	144, 160
BfaI	CTAG	1 cut(s)	454
BfoI	RGCGCY	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	2 cut(s)	94, 410
BlsI	GCNGC	2 cut(s)	95, 411
BmeT110I	CYCGRG	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	319, 373
BpiI	GAAGAC	1 cut(s)	244
BsaHI	GRCGYC	2 cut(s)	153, 318
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse1I	ACTGG	1 cut(s)	433
BseAI	TCCGGA	1 cut(s)	287
BseGI	GGATG	2 cut(s)	143, 454
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	384
BseX3I	CGGCCG	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	93, 359
BshNI	GGYRCC	1 cut(s)	317
BsiEI	CGRYCG	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	288, 413
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	144, 160
BsmBI	CGTCTC	2 cut(s)	144, 160
BsnI	GGCC	2 cut(s)	93, 359
BsoBI	CYCGRG	1 cut(s)	147
Bsp13I	TCCGGA	1 cut(s)	287
Bsp143I	GATC	4 cut(s)	48, 56, 298, 312
BspACI	CCGC	3 cut(s)	85, 94, 410
BspANI	GGCC	2 cut(s)	93, 359
BspEI	TCCGGA	1 cut(s)	287
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	319, 373
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	2 cut(s)	51, 320
BspT107I	GGYRCC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	433
BssMI	GATC	4 cut(s)	48, 56, 298, 312
BssNI	GRCGYC	2 cut(s)	153, 318
Bst4CI	ACNGT	2 cut(s)	172, 250
Bst6I	CTCTTC	2 cut(s)	30, 120
BstACI	GRCGYC	2 cut(s)	153, 318
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	143, 454
BstFNI	CGCG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	2 cut(s)	98, 320
BstKTI	GATC	4 cut(s)	51, 59, 301, 315
BstMAI	GTCTC	2 cut(s)	144, 160
BstMBI	GATC	4 cut(s)	48, 56, 298, 312
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 173, 415
BstUI	CGCG	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BstZI	CGGCCG	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	93, 359
BtsCI	GGATG	2 cut(s)	143, 454
BtsIMutI	CAGTG	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	18
CfoI	GCGC	2 cut(s)	98, 320
Csp6I	GTAC	2 cut(s)	430, 439
CviAII	CATG	2 cut(s)	274, 376
CviJI	RGCY	5 cut(s)	6, 93, 359, 374, 388
CviKI_1	RGCY	5 cut(s)	6, 93, 359, 374, 388
CviQI	GTAC	2 cut(s)	430, 439
DdeI	CTNAG	1 cut(s)	330
DinI	GGCGCC	1 cut(s)	319
DpnI	GATC	4 cut(s)	50, 58, 300, 314
DpnII	GATC	4 cut(s)	48, 56, 298, 312
DraIII	CACNNNGTG	1 cut(s)	309
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	91
EagI	CGGCCG	1 cut(s)	91
Eam1104I	CTCTTC	2 cut(s)	30, 120
EarI	CTCTTC	2 cut(s)	30, 120
EclXI	CGGCCG	1 cut(s)	91
Eco52I	CGGCCG	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	147
EcoRI	GAATTC	1 cut(s)	420
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
Esp3I	CGTCTC	2 cut(s)	144, 160
FaeI	CATG	2 cut(s)	277, 379
FaiI	YATR	3 cut(s)	230, 275, 377
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FatI	CATG	2 cut(s)	273, 375
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	94, 410
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	2 cut(s)	94, 410
FspBI	CTAG	1 cut(s)	454
GlaI	GCGC	2 cut(s)	97, 319
GluI	GCNGC	2 cut(s)	94, 410
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	93, 359
HapII	CCGG	2 cut(s)	288, 413
HhaI	GCGC	2 cut(s)	98, 320
Hin1I	GRCGYC	2 cut(s)	153, 318
Hin1II	CATG	2 cut(s)	277, 379
Hin6I	GCGC	2 cut(s)	96, 318
HinP1I	GCGC	2 cut(s)	96, 318
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	4 cut(s)	44, 104, 191, 284
HpaII	CCGG	2 cut(s)	288, 413
Hpy166II	GTNNAC	2 cut(s)	211, 397
Hpy188I	TCNGA	6 cut(s)	56, 103, 196, 327, 368, 426
Hpy188III	TCNNGA	3 cut(s)	122, 147, 288
Hpy8I	GTNNAC	2 cut(s)	211, 397
Hpy99I	CGWCG	6 cut(s)	128, 131, 176, 185, 200, 203
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	172, 250
HpyCH4IV	ACGT	3 cut(s)	129, 153, 201
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 173, 415
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	3 cut(s)	129, 153, 201
Hsp92I	GRCGYC	2 cut(s)	153, 318
Hsp92II	CATG	2 cut(s)	277, 379
HspAI	GCGC	2 cut(s)	96, 318
KasI	GGCGCC	1 cut(s)	317
Kpn2I	TCCGGA	1 cut(s)	287
Kzo9I	GATC	4 cut(s)	48, 56, 298, 312
LmnI	GCTCC	2 cut(s)	371, 415
LpnPI	CCDG	6 cut(s)	23, 191, 301, 320, 426, 446
MaeI	CTAG	1 cut(s)	454
MaeII	ACGT	3 cut(s)	129, 153, 201
MalI	GATC	4 cut(s)	50, 58, 300, 314
MboI	GATC	4 cut(s)	48, 56, 298, 312
MboII	GAAGA	8 cut(s)	40, 47, 107, 110, 244, 247, 250, 289
MflI	RGATCY	1 cut(s)	56
MluCI	AATT	1 cut(s)	420
Mly113I	GGCGCC	1 cut(s)	318
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	7 cut(s)	31, 86, 92, 224, 253, 349, 362
MroI	TCCGGA	1 cut(s)	287
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	2 cut(s)	288, 413
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	93, 173, 415
NarI	GGCGCC	1 cut(s)	318
NdeII	GATC	4 cut(s)	48, 56, 298, 312
NlaIII	CATG	2 cut(s)	277, 379
NlaIV	GGNNCC	2 cut(s)	319, 373
PcsI	WCGNNNNNNNCGW	4 cut(s)	23, 180, 186, 195
PfeI	GAWTC	4 cut(s)	44, 104, 191, 284
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	95, 411
PluTI	GGCGCC	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	319, 373
PsuI	RGATCY	1 cut(s)	56
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	2 cut(s)	431, 440
RsaNI	GTAC	2 cut(s)	430, 439
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	2 cut(s)	94, 410
Sau3AI	GATC	4 cut(s)	48, 56, 298, 312
SetI	ASST	9 cut(s)	8, 12, 42, 132, 156, 204, 210, 216, 390
SfoI	GGCGCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	420
SsiI	CCGC	3 cut(s)	85, 94, 410
SspDI	GGCGCC	1 cut(s)	317
SspMI	CTAG	1 cut(s)	454
TaaI	ACNGT	2 cut(s)	172, 250
TaiI	ACGT	3 cut(s)	132, 156, 204
TaqI	TCGA	6 cut(s)	47, 66, 123, 183, 189, 225
TasI	AATT	1 cut(s)	420
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	2 cut(s)	96, 412
TfiI	GAWTC	4 cut(s)	44, 104, 191, 284
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	27
TspDTI	ATGAA	3 cut(s)	290, 331, 392
TspRI	CASTG	1 cut(s)	27
Tth111I	GACNNNGTC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	1 cut(s)	454
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.