MD11G1172800.v1.1

Thioredoxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0007967
Physical Location & Seq
Forward (+)
19206053 .. 19208530
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1172800.v1.1.491

Sequence Viewer

Length: 552 bp
ATGAGTTACGTATTGCCGACATTGACGAAGAAGCAGGAGGTGGACTCCATCATCCGATCCACCATCGACAAAGTCCTCGTCCTCCGCTTCGGCCGCGCCTCCGATTCCGCTTGCCTTCTCCTCGACGACGTTCTCGCCAAAACGGCGCGGGAGGTCTCCAAGTTCGCCACGGTCGCGCTTGTCGATACCGATTCGGAGGAAATTCAAGTCTACGTCAGGTATTTCGACATCGCTCTGATCCCGTCTACCATCTTCTTCTTCAATGCCCACCACATGAAGATGGATTCCGGAACTGCGGACCACACCAAATGGGTCGGCGCGTTTCAGCAGAAACAGGACTTTATCGATGTTGTCGAGGCGATTTTCAGAGGAGCGATGAAGGGGAAGATGATCGTGAATTGCCCCCTTCCACCAGAGCGAATACCCAAATACCAGTTGCTCTACAAAGATCCATGTTTGATTTTCTGGAAAAATTCACTGCGGACGAAGGAAGCAGGGGTTGATGGTCCTACTACATGGTTTTGCACCAGGAAAGGCGAAAGACATTGGTGA

Protein Analysis

184

Amino Acids

20.94

Weight (kDa)

8.63

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIM1 PF02966 4 - 137 4.2e-50 Mitosis protein DIM1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 210, 245
AccII CGCG 4 cut(s) 96, 148, 176, 320
AccIII TCCGGA 1 cut(s) 287
AciI CCGC 6 cut(s) 85, 94, 108, 148, 296, 481
AclWI GGATC 3 cut(s) 51, 232, 443
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 2 cut(s) 201, 472
AgsI TTSAA 2 cut(s) 206, 262
AjnI CCWGG 1 cut(s) 527
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 3 cut(s) 51, 232, 443
Aor13HI TCCGGA 1 cut(s) 287
AoxI GGCC 1 cut(s) 91
ApoI RAATTY 2 cut(s) 201, 472
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AspLEI GCGC 4 cut(s) 98, 148, 178, 320
AspS9I GGNCC 2 cut(s) 298, 506
AvaII GGWCC 2 cut(s) 298, 506
BccI CCATC 5 cut(s) 56, 71, 257, 274, 497
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 160
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 529
Bme18I GGWCC 2 cut(s) 298, 506
BmgT120I GGNCC 2 cut(s) 298, 506
BmrFI CCNGG 1 cut(s) 529
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bsa29I ATCGAT 1 cut(s) 345
BsaAI YACGTR 1 cut(s) 10
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 433
BseAI TCCGGA 1 cut(s) 287
BseBI CCWGG 1 cut(s) 529
BseCI ATCGAT 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 2 cut(s) 110, 384
BseX3I CGGCCG 1 cut(s) 91
Bsh1236I CGCG 4 cut(s) 96, 148, 176, 320
Bsh1285I CGRYCG 2 cut(s) 94, 174
BshFI GGCC 1 cut(s) 93
BshVI ATCGAT 1 cut(s) 345
BsiEI CGRYCG 2 cut(s) 94, 174
BsiSI CCGG 1 cut(s) 288
BsmAI GTCTC 1 cut(s) 160
BsnI GGCC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 160
Bsp13I TCCGGA 1 cut(s) 287
Bsp143I GATC 4 cut(s) 56, 237, 390, 448
BspACI CCGC 6 cut(s) 85, 94, 108, 148, 296, 481
BspANI GGCC 1 cut(s) 93
BspDI ATCGAT 1 cut(s) 345
BspEI TCCGGA 1 cut(s) 287
BspFNI CGCG 4 cut(s) 96, 148, 176, 320
BspPI GGATC 3 cut(s) 51, 232, 443
BspTNI GGTCTC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 4 cut(s) 56, 237, 390, 448
Bst2UI CCWGG 1 cut(s) 529
Bst4CI ACNGT 1 cut(s) 172
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 51
BstFNI CGCG 4 cut(s) 96, 148, 176, 320
BstHHI GCGC 4 cut(s) 98, 148, 178, 320
BstKTI GATC 4 cut(s) 59, 240, 393, 451
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 4 cut(s) 56, 237, 390, 448
BstMCI CGRYCG 2 cut(s) 94, 174
BstMWI GCNNNNNNNGC 3 cut(s) 93, 143, 173
BstNI CCWGG 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 527
BstSNI TACGTA 1 cut(s) 10
BstUI CGCG 4 cut(s) 96, 148, 176, 320
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BstZI CGGCCG 1 cut(s) 91
Bsu15I ATCGAT 1 cut(s) 345
BsuRI GGCC 1 cut(s) 93
BsuTUI ATCGAT 1 cut(s) 345
BtgI CCRYGG 1 cut(s) 168
BtgZI GCGATG 2 cut(s) 214, 389
BtsCI GGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 1 cut(s) 476
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 4 cut(s) 98, 148, 178, 320
Cfr13I GGNCC 2 cut(s) 298, 506
ClaI ATCGAT 1 cut(s) 345
CviAII CATG 3 cut(s) 274, 453, 516
CviJI RGCY 1 cut(s) 93
CviKI_1 RGCY 1 cut(s) 93
DpnI GATC 4 cut(s) 58, 239, 392, 450
DpnII GATC 4 cut(s) 56, 237, 390, 448
EaeI YGGCCR 1 cut(s) 91
EagI CGGCCG 1 cut(s) 91
EclXI CGGCCG 1 cut(s) 91
Eco105I TACGTA 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 298, 506
Eco52I CGGCCG 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 527
FaeI CATG 3 cut(s) 277, 456, 519
FaiI YATR 3 cut(s) 275, 454, 517
FatI CATG 3 cut(s) 273, 452, 515
FauI CCCGC 1 cut(s) 141
FblI GTMKAC 2 cut(s) 210, 245
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 94
GlaI GCGC 4 cut(s) 97, 147, 177, 319
GluI GCNGC 1 cut(s) 94
HaeIII GGCC 1 cut(s) 93
HapII CCGG 1 cut(s) 288
HhaI GCGC 4 cut(s) 98, 148, 178, 320
Hin1II CATG 3 cut(s) 277, 456, 519
Hin6I GCGC 4 cut(s) 96, 146, 176, 318
HinP1I GCGC 4 cut(s) 96, 146, 176, 318
HinfI GANTC 4 cut(s) 44, 104, 191, 284
HpaII CCGG 1 cut(s) 288
Hpy166II GTNNAC 3 cut(s) 43, 211, 246
Hpy188I TCNGA 5 cut(s) 56, 103, 196, 237, 368
Hpy188III TCNNGA 3 cut(s) 288, 394, 466
Hpy8I GTNNAC 3 cut(s) 43, 211, 246
Hpy99I CGWCG 2 cut(s) 128, 131
HpyAV CCTTC 4 cut(s) 125, 373, 416, 481
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 3 cut(s) 9, 129, 213
HpyCH4V TGCA 1 cut(s) 525
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 143, 173
HpySE526I ACGT 3 cut(s) 9, 129, 213
Hsp92II CATG 3 cut(s) 277, 456, 519
HspAI GCGC 4 cut(s) 96, 146, 176, 318
Kpn2I TCCGGA 1 cut(s) 287
Kzo9I GATC 4 cut(s) 56, 237, 390, 448
LmnI GCTCC 1 cut(s) 371
MaeII ACGT 3 cut(s) 9, 129, 213
MaeIII GTNAC 1 cut(s) 5
MalI GATC 4 cut(s) 58, 239, 392, 450
MboI GATC 4 cut(s) 56, 237, 390, 448
MboII GAAGA 6 cut(s) 40, 244, 247, 250, 289, 397
MflI RGATCY 1 cut(s) 448
MluCI AATT 3 cut(s) 201, 397, 472
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 9 cut(s) 31, 86, 92, 109, 131, 145, 190, 349, 362
MroI TCCGGA 1 cut(s) 287
MslI CAYNNNNRTG 1 cut(s) 278
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 529
MvaI CCWGG 1 cut(s) 529
MvnI CGCG 4 cut(s) 96, 148, 176, 320
MwoI GCNNNNNNNGC 3 cut(s) 93, 143, 173
NdeII GATC 4 cut(s) 56, 237, 390, 448
NlaIII CATG 3 cut(s) 277, 456, 519
PcsI WCGNNNNNNNCGW 2 cut(s) 180, 351
PfeI GAWTC 3 cut(s) 104, 191, 284
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 95
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
Ppu21I YACGTR 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 527
PspGI CCWGG 1 cut(s) 527
PspPI GGNCC 2 cut(s) 298, 506
PsuI RGATCY 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 278
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 4 cut(s) 56, 237, 390, 448
Sau96I GGNCC 2 cut(s) 298, 506
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 529
SetI ASST 6 cut(s) 12, 42, 132, 156, 216, 221
SinI GGWCC 2 cut(s) 298, 506
SmiMI CAYNNNNRTG 1 cut(s) 278
SnaBI TACGTA 1 cut(s) 10
Sse9I AATT 3 cut(s) 201, 397, 472
SsiI CCGC 6 cut(s) 85, 94, 108, 148, 296, 481
StyD4I CCNGG 1 cut(s) 527
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 3 cut(s) 12, 132, 216
TaqI TCGA 6 cut(s) 66, 123, 183, 225, 345, 354
TasI AATT 3 cut(s) 201, 397, 472
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 3 cut(s) 104, 191, 284
TscAI CASTG 1 cut(s) 483
TspDTI ATGAA 2 cut(s) 290, 392
TspRI CASTG 1 cut(s) 483
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 2 cut(s) 298, 506
XapI RAATTY 2 cut(s) 201, 472
XmiI GTMKAC 2 cut(s) 210, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.