Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007967

Physical Location & Seq

Genomic Coordinates Forward (+)

43668948 .. 43672963

Gene Structure 4016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGTTACCTATTGACGACATTGACGAAGAAGCAAGAGGTGGATTCGATAATCAGATCCACCATCGACAAGGTCCTCGTCCTCCGCTTCGGCCGCGCTTCCGATTCCGTCACTCTTCTTCTCGACGACGTTCTGGCCAAATCAGCCCGTGACGTCTCCAAGTTCGCAACCGTGGCACTCGTCGATGTCGATTCCGACGACATTCAGGTCTACCTCCATTACTTCGACATCACTTTGATTCCCTCCACCATTTTCTTCTTCAACGCCCATCACATCAAGATGGATTCCGGAACTGCTGATCACACCAAATGGATCGGCGCGTTTCGGACGAAGCAGGACTTCATTGATGTTGTCGAGGCTATTTTCAGAGGAGCGATGAAAGGGAAGCTAATTGTGAACTGCCCCTTGCCGCCGGAACGAATTCCGAGATACCAGTTGTACTATAACGATGAGAGGAAGGACTCTGAAAAGAAAGAGGGTCTTCCTGGTTCTTCTTCGTCATTGCCCATTTCATCCCATTGCACGAAAAGCAGGACTTCATTAATATTGTTGAGGCGATTTCGAAGGAGGAAGGCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DIM1

Protein Analysis

194

Amino Acids

21.96

Weight (kDa)

9.44

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIM1	PF02966	4 - 137	3.3e-47	Mitosis protein DIM1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24730
fragaria_vesca	FvH4_3g25760 FvH4_3g25760 FvH4_3g25760
malus_domestica	MD11G1172800.v1.1
prunus_persica	Prupe.2G099400_v2.0.a1 Prupe.2G099400_v2.0.a1
pyrus_communis	pycom03g10700
rosa_chinensis	RchiOBHm_Chr5g0046911 RchiOBHm_Chr5g0047331
rosa_laevigata	RLG00000034455 RLG00000034491
rosa_multiflora	Rmu_sc0011420.1_g000006 Rmu_sc0012847.1_g000004
rosa_roxburghii	Rroxscaffold_1G00034480
rosa_rugosa	Rorug05G0233000 Rorug05G0233000 Rorug05G0233000 Rorug05G0233100 Rorug05G0236000
rosa_samantha	Rh5AG312100 Rh5BG321100 Rh5DG331700
rosa_wichuraiana	Rw5G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AatII	GACGTC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	2 cut(s)	96, 320
AccIII	TCCGGA	1 cut(s)	287
AciI	CCGC	3 cut(s)	85, 94, 410
AclWI	GGATC	2 cut(s)	51, 320
AcoI	YGGCCR	2 cut(s)	91, 135
AcsI	RAATTY	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	2 cut(s)	388, 579
AluI	AGCT	2 cut(s)	388, 579
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	2 cut(s)	51, 320
Aor13HI	TCCGGA	1 cut(s)	287
AoxI	GGCC	2 cut(s)	91, 135
ApoI	RAATTY	1 cut(s)	420
AseI	ATTAAT	1 cut(s)	542
Asp700I	GAANNNNTTC	1 cut(s)	420
AspLEI	GCGC	2 cut(s)	98, 320
AspS9I	GGNCC	1 cut(s)	73
AsuII	TTCGAA	1 cut(s)	562
AvaII	GGWCC	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	473
BccI	CCATC	3 cut(s)	71, 274, 276
BciT130I	CCWGG	1 cut(s)	486
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	160
BisI	GCNGC	2 cut(s)	94, 410
BlsI	GCNGC	2 cut(s)	95, 411
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	473
Bpu14I	TTCGAA	1 cut(s)	562
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	2 cut(s)	500, 517
BseAI	TCCGGA	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	512
BseMI	GCAATG	2 cut(s)	500, 517
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	384
BseX3I	CGGCCG	1 cut(s)	91
Bsh1236I	CGCG	2 cut(s)	96, 320
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	93, 137
BsiEI	CGRYCG	1 cut(s)	94
BsiSI	CCGG	2 cut(s)	288, 413
BsmAI	GTCTC	1 cut(s)	160
BsmBI	CGTCTC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	93, 137
Bsp119I	TTCGAA	1 cut(s)	562
Bsp13I	TCCGGA	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	56, 298, 312
BspACI	CCGC	3 cut(s)	85, 94, 410
BspANI	GGCC	2 cut(s)	93, 137
BspEI	TCCGGA	1 cut(s)	287
BspFNI	CGCG	2 cut(s)	96, 320
BspPI	GGATC	2 cut(s)	51, 320
BspT104I	TTCGAA	1 cut(s)	562
BsrDI	GCAATG	2 cut(s)	500, 517
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	3 cut(s)	56, 298, 312
BssNI	GRCGYC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	153
BstBI	TTCGAA	1 cut(s)	562
BstC8I	GCNNGC	1 cut(s)	577
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	512
BstFNI	CGCG	2 cut(s)	96, 320
BstHHI	GCGC	2 cut(s)	98, 320
BstKTI	GATC	3 cut(s)	59, 301, 315
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	3 cut(s)	56, 298, 312
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 143, 173, 528
BstNI	CCWGG	1 cut(s)	486
BstSCI	CCNGG	1 cut(s)	484
BstUI	CGCG	2 cut(s)	96, 320
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BstZI	CGGCCG	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	93, 137
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	512
Cac8I	GCNNGC	1 cut(s)	577
CfoI	GCGC	2 cut(s)	98, 320
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	439
CviJI	RGCY	6 cut(s)	93, 137, 146, 359, 388, 579
CviKI_1	RGCY	6 cut(s)	93, 137, 146, 359, 388, 579
CviQI	GTAC	1 cut(s)	439
DpnI	GATC	3 cut(s)	58, 300, 314
DpnII	GATC	3 cut(s)	56, 298, 312
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	2 cut(s)	91, 135
EagI	CGGCCG	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EclXI	CGGCCG	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	73
Eco52I	CGGCCG	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	484
Esp3I	CGTCTC	1 cut(s)	160
FaiI	YATR	1 cut(s)	444
FalI	AAGNNNNNCTT	6 cut(s)	323, 355, 465, 497, 520, 552
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	94, 410
FokI	GGATG	1 cut(s)	499
Fsp4HI	GCNGC	2 cut(s)	94, 410
GlaI	GCGC	2 cut(s)	97, 319
GluI	GCNGC	2 cut(s)	94, 410
HaeIII	GGCC	2 cut(s)	93, 137
HapII	CCGG	2 cut(s)	288, 413
HhaI	GCGC	2 cut(s)	98, 320
Hin1I	GRCGYC	1 cut(s)	153
Hin6I	GCGC	2 cut(s)	96, 318
HinP1I	GCGC	2 cut(s)	96, 318
HinfI	GANTC	6 cut(s)	44, 104, 191, 238, 284, 461
HpaII	CCGG	2 cut(s)	288, 413
Hpy166II	GTNNAC	2 cut(s)	211, 397
Hpy188I	TCNGA	7 cut(s)	56, 103, 196, 327, 368, 426, 466
Hpy188III	TCNNGA	3 cut(s)	122, 277, 288
Hpy8I	GTNNAC	2 cut(s)	211, 397
Hpy99I	CGWCG	4 cut(s)	128, 131, 185, 200
HpyAV	CCTTC	3 cut(s)	451, 558, 565
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	2 cut(s)	129, 153
HpyCH4V	TGCA	1 cut(s)	522
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 143, 173, 528
HpySE526I	ACGT	2 cut(s)	129, 153
Hsp92I	GRCGYC	1 cut(s)	153
HspAI	GCGC	2 cut(s)	96, 318
Kpn2I	TCCGGA	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	56, 298, 312
LmnI	GCTCC	1 cut(s)	371
LpnPI	CCDG	9 cut(s)	119, 191, 301, 320, 426, 446, 471, 498, 517
MaeII	ACGT	2 cut(s)	129, 153
MaeIII	GTNAC	3 cut(s)	5, 109, 149
MalI	GATC	3 cut(s)	58, 300, 314
MboI	GATC	3 cut(s)	56, 298, 312
MboII	GAAGA	8 cut(s)	40, 107, 110, 247, 250, 473, 483, 486
MflI	RGATCY	1 cut(s)	56
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	2 cut(s)	390, 420
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	219
Mox20I	TGGCCA	1 cut(s)	137
MroI	TCCGGA	1 cut(s)	287
MroXI	GAANNNNTTC	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	1 cut(s)	542
MslI	CAYNNNNRTG	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	137
MspI	CCGG	2 cut(s)	288, 413
MspR9I	CCNGG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	486
MvnI	CGCG	2 cut(s)	96, 320
MwoI	GCNNNNNNNGC	4 cut(s)	93, 143, 173, 528
NdeII	GATC	3 cut(s)	56, 298, 312
NmuCI	GTSAC	2 cut(s)	109, 149
NspV	TTCGAA	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	3 cut(s)	23, 186, 195
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	5 cut(s)	44, 104, 191, 238, 284
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	95, 411
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PpuMI	RGGWCCY	1 cut(s)	73
PshBI	ATTAAT	1 cut(s)	542
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspPI	GGNCC	1 cut(s)	73
PspPPI	RGGWCCY	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	56
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	542
SatI	GCNGC	2 cut(s)	94, 410
Sau3AI	GATC	3 cut(s)	56, 298, 312
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	486
SetI	ASST	9 cut(s)	12, 42, 75, 132, 156, 210, 216, 390, 581
SfuI	TTCGAA	1 cut(s)	562
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	390, 420
SsiI	CCGC	3 cut(s)	85, 94, 410
SspI	AATATT	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	2 cut(s)	132, 156
TaqI	TCGA	8 cut(s)	47, 66, 123, 183, 189, 225, 354, 562
TasI	AATT	2 cut(s)	390, 420
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	2 cut(s)	96, 412
TfiI	GAWTC	5 cut(s)	44, 104, 191, 238, 284
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TseFI	GTSAC	2 cut(s)	109, 149
Tsp45I	GTSAC	2 cut(s)	109, 149
TspDTI	ATGAA	4 cut(s)	331, 392, 501, 528
TspGWI	ACGGA	1 cut(s)	97
Tth111I	GACNNNGTC	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	542
XapI	RAATTY	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	420
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.