Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007967

Physical Location & Seq

Genomic Coordinates Forward (+)

9970311 .. 9970787

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g10700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAGTTACGTATTGACGACACTGACGAAGAAGCAGGAGGTGGATTCCATCATCCGATCCACCATCGATTTCGCTTGCCTTCTCCTCGACGACGCTCTCGCCAAAACGGCGCGGGAGATCTCCAAGTTCGCGACGGTCGCGCTCGTCGATACTGATTCGGCGGGAATTCAAGTCTACGTCAGGTGTTTCGACATTGCTCTGATCCCGTCGACCATCTTCTTCTTCAATGCCCACCACAAAAAGATGGATTCGGGAACTGCGGACCACAGCAAATGGGTCGGCGCGTTTCAGCAGAAACAGAACTTTATTGATGTTGTGGAGGCGATTTTCAGAGGAGCGATGAAGGGGAAGATAATCGTGAATTGCCCCCTGCCGCCGGAGCGAATACCCAAATACCAGTTCTCTATAAAGATGTGTAGAAGTTGGAGAGATTTAAGGTATTTTATTTTGTTTGTTTACTATGATTTTGATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DIM1

Protein Analysis

159

Amino Acids

18.15

Weight (kDa)

8.58

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIM1	PF02966	21 - 125	2.6e-33	Mitosis protein DIM1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0007967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24730
fragaria_vesca	FvH4_3g25760 FvH4_3g25760 FvH4_3g25760
malus_domestica	MD11G1172800.v1.1
prunus_persica	Prupe.2G099400_v2.0.a1 Prupe.2G099400_v2.0.a1
pyrus_communis	pycom03g10700
rosa_chinensis	RchiOBHm_Chr5g0046911 RchiOBHm_Chr5g0047331
rosa_laevigata	RLG00000034455 RLG00000034491
rosa_multiflora	Rmu_sc0011420.1_g000006 Rmu_sc0012847.1_g000004
rosa_roxburghii	Rroxscaffold_1G00034480
rosa_rugosa	Rorug05G0233000 Rorug05G0233000 Rorug05G0233000 Rorug05G0233100 Rorug05G0236000
rosa_samantha	Rh5AG312100 Rh5BG321100 Rh5DG331700
rosa_wichuraiana	Rw5G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	174, 209
AccII	CGCG	4 cut(s)	112, 131, 140, 284
AciI	CCGC	4 cut(s)	112, 161, 260, 374
AclWI	GGATC	2 cut(s)	51, 196
AcsI	RAATTY	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	170, 226
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AlwI	GGATC	2 cut(s)	51, 196
ApoI	RAATTY	1 cut(s)	165
AspLEI	GCGC	3 cut(s)	112, 142, 284
AspS9I	GGNCC	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	262
BccI	CCATC	4 cut(s)	56, 71, 221, 238
BceAI	ACGGC	1 cut(s)	123
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BglI	GCCNNNNNGGC	1 cut(s)	107
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
Bsa29I	ATCGAT	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	66
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMI	GCAATG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	2 cut(s)	74, 348
Bsh1236I	CGCG	4 cut(s)	112, 131, 140, 284
Bsh1285I	CGRYCG	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	56, 117, 201
Bsp68I	TCGCGA	1 cut(s)	131
BspACI	CCGC	4 cut(s)	112, 161, 260, 374
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	4 cut(s)	112, 131, 140, 284
BspPI	GGATC	2 cut(s)	51, 196
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	397
BssMI	GATC	3 cut(s)	56, 117, 201
Bst4CI	ACNGT	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	51
BstFNI	CGCG	4 cut(s)	112, 131, 140, 284
BstHHI	GCGC	3 cut(s)	112, 142, 284
BstKTI	GATC	3 cut(s)	59, 120, 204
BstMBI	GATC	3 cut(s)	56, 117, 201
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 137, 379
BstSNI	TACGTA	1 cut(s)	10
BstUI	CGCG	4 cut(s)	112, 131, 140, 284
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	66
BsuTUI	ATCGAT	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	20
BtuMI	TCGCGA	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	3 cut(s)	112, 142, 284
Cfr13I	GGNCC	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	1 cut(s)	101
DpnI	GATC	3 cut(s)	58, 119, 203
DpnII	GATC	3 cut(s)	56, 117, 201
Eco105I	TACGTA	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	165
FaiI	YATR	2 cut(s)	407, 462
FauI	CCCGC	2 cut(s)	105, 154
FblI	GTMKAC	2 cut(s)	174, 209
Fnu4HI	GCNGC	1 cut(s)	374
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	374
GlaI	GCGC	3 cut(s)	111, 141, 283
GluI	GCNGC	1 cut(s)	374
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	3 cut(s)	112, 142, 284
Hin6I	GCGC	3 cut(s)	110, 140, 282
HinP1I	GCGC	3 cut(s)	110, 140, 282
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	3 cut(s)	44, 155, 248
HpaII	CCGG	1 cut(s)	377
Hpy166II	GTNNAC	3 cut(s)	175, 210, 457
Hpy188I	TCNGA	3 cut(s)	56, 201, 332
Hpy188III	TCNNGA	3 cut(s)	130, 252, 358
Hpy8I	GTNNAC	3 cut(s)	175, 210, 457
Hpy99I	CGWCG	5 cut(s)	92, 95, 136, 149, 211
HpyAV	CCTTC	2 cut(s)	89, 337
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	2 cut(s)	9, 177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 137, 379
HpySE526I	ACGT	2 cut(s)	9, 177
HspAI	GCGC	3 cut(s)	110, 140, 282
Kzo9I	GATC	3 cut(s)	56, 117, 201
LmnI	GCTCC	2 cut(s)	335, 379
LpnPI	CCDG	5 cut(s)	20, 166, 383, 390, 410
MaeII	ACGT	2 cut(s)	9, 177
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	3 cut(s)	58, 119, 203
MboI	GATC	3 cut(s)	56, 117, 201
MboII	GAAGA	5 cut(s)	40, 208, 211, 214, 361
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	2 cut(s)	165, 361
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	4 cut(s)	31, 95, 313, 326
MseI	TTAA	1 cut(s)	434
MspI	CCGG	1 cut(s)	377
MvnI	CGCG	4 cut(s)	112, 131, 140, 284
MwoI	GCNNNNNNNGC	3 cut(s)	107, 137, 379
NdeII	GATC	3 cut(s)	56, 117, 201
NruI	TCGCGA	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	2 cut(s)	23, 144
PfeI	GAWTC	3 cut(s)	44, 155, 248
PkrI	GCNGC	1 cut(s)	375
Ppu21I	YACGTR	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	117
RruI	TCGCGA	1 cut(s)	131
SalI	GTCGAC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	1 cut(s)	374
Sau3AI	GATC	3 cut(s)	56, 117, 201
Sau96I	GGNCC	1 cut(s)	262
SetI	ASST	5 cut(s)	12, 42, 180, 185, 440
SinI	GGWCC	1 cut(s)	262
SnaBI	TACGTA	1 cut(s)	10
Sse9I	AATT	2 cut(s)	165, 361
SsiI	CCGC	4 cut(s)	112, 161, 260, 374
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	2 cut(s)	12, 180
TaqI	TCGA	5 cut(s)	66, 87, 147, 189, 209
TasI	AATT	2 cut(s)	165, 361
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	3 cut(s)	44, 155, 248
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	165
XmiI	GTMKAC	2 cut(s)	174, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.