Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007967

Physical Location & Seq

Genomic Coordinates Reverse (-)

43743031 .. 43753059

Gene Structure 10029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG331700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGTTACCTATTGACGACACTGACGAAGAAGCAAGAGGTGGATTCGATCATCAGATCCACCATCGACAAGGTCCTCGTCCTCCGCTTCGGCCGCGCTTCCGATTCCGTCTCTCTTCTTCTCGACGACGTTCTCGCCAAATCAGCCCGCGACGTCTCCAAGTTCGCAACCGTGGCACTCGTCGATGTCGATTCCGACGACGTTCAGGTCTACCTCCATTACTTCGACATCACTCTGATTCCGTCCACCATTTTCTTCTTCAACGCCCATCACATCAAGATGGATTCCGGAACTGCTGATCACACCAAATGGATCGGCGCGTTTCGGTCGAAGCAGGACTTCATCGATGTTGTCGAGGCTATTTTCAGAGGAGCGATGAAAGGGAAGCTAATTGTGAACTGCCCCTTGCCGCCGGAACGAATTCCGAGATACCAGTTGTACTATAAAGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DIM1

Protein Analysis

151

Amino Acids

17.16

Weight (kDa)

6.9

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIM1	PF02966	4 - 137	7.9e-48	Mitosis protein DIM1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24730
fragaria_vesca	FvH4_3g25760 FvH4_3g25760 FvH4_3g25760
malus_domestica	MD11G1172800.v1.1
prunus_persica	Prupe.2G099400_v2.0.a1 Prupe.2G099400_v2.0.a1
pyrus_communis	pycom03g10700
rosa_chinensis	RchiOBHm_Chr5g0046911 RchiOBHm_Chr5g0047331
rosa_laevigata	RLG00000034455 RLG00000034491
rosa_multiflora	Rmu_sc0011420.1_g000006 Rmu_sc0012847.1_g000004
rosa_roxburghii	Rroxscaffold_1G00034480
rosa_rugosa	Rorug05G0233000 Rorug05G0233000 Rorug05G0233000 Rorug05G0233100 Rorug05G0236000
rosa_samantha	Rh5AG312100 Rh5BG321100 Rh5DG331700
rosa_wichuraiana	Rw5G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AatII	GACGTC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	3 cut(s)	96, 150, 320
AccIII	TCCGGA	1 cut(s)	287
AciI	CCGC	4 cut(s)	85, 94, 148, 410
AclWI	GGATC	2 cut(s)	51, 320
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw26I	GTCTC	2 cut(s)	115, 160
AlwI	GGATC	2 cut(s)	51, 320
Aor13HI	TCCGGA	1 cut(s)	287
AoxI	GGCC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	420
Asp700I	GAANNNNTTC	1 cut(s)	420
AspLEI	GCGC	2 cut(s)	98, 320
AspS9I	GGNCC	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	73
BccI	CCATC	3 cut(s)	71, 274, 276
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	115, 160
BfaI	CTAG	1 cut(s)	454
BisI	GCNGC	2 cut(s)	94, 410
BlsI	GCNGC	2 cut(s)	95, 411
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
Bsa29I	ATCGAT	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	433
BseAI	TCCGGA	1 cut(s)	287
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	384
BseX3I	CGGCCG	1 cut(s)	91
Bsh1236I	CGCG	3 cut(s)	96, 150, 320
Bsh1285I	CGRYCG	2 cut(s)	94, 329
BshFI	GGCC	1 cut(s)	93
BshVI	ATCGAT	1 cut(s)	345
BsiEI	CGRYCG	2 cut(s)	94, 329
BsiSI	CCGG	2 cut(s)	288, 413
BsmAI	GTCTC	2 cut(s)	115, 160
BsmBI	CGTCTC	2 cut(s)	115, 160
BsnI	GGCC	1 cut(s)	93
Bsp13I	TCCGGA	1 cut(s)	287
Bsp143I	GATC	4 cut(s)	48, 56, 298, 312
BspACI	CCGC	4 cut(s)	85, 94, 148, 410
BspANI	GGCC	1 cut(s)	93
BspDI	ATCGAT	1 cut(s)	345
BspEI	TCCGGA	1 cut(s)	287
BspFNI	CGCG	3 cut(s)	96, 150, 320
BspPI	GGATC	2 cut(s)	51, 320
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	4 cut(s)	48, 56, 298, 312
BssNI	GRCGYC	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	148
BstDSI	CCRYGG	1 cut(s)	171
BstFNI	CGCG	3 cut(s)	96, 150, 320
BstHHI	GCGC	2 cut(s)	98, 320
BstKTI	GATC	4 cut(s)	51, 59, 301, 315
BstMAI	GTCTC	2 cut(s)	115, 160
BstMBI	GATC	4 cut(s)	48, 56, 298, 312
BstMCI	CGRYCG	2 cut(s)	94, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 143, 173
BstUI	CGCG	3 cut(s)	96, 150, 320
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BstZI	CGGCCG	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	93
BsuTUI	ATCGAT	1 cut(s)	345
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	389
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	148
CfoI	GCGC	2 cut(s)	98, 320
Cfr13I	GGNCC	1 cut(s)	73
ClaI	ATCGAT	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	439
CviJI	RGCY	4 cut(s)	93, 146, 359, 388
CviKI_1	RGCY	4 cut(s)	93, 146, 359, 388
CviQI	GTAC	1 cut(s)	439
DpnI	GATC	4 cut(s)	50, 58, 300, 314
DpnII	GATC	4 cut(s)	48, 56, 298, 312
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	91
EagI	CGGCCG	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EclXI	CGGCCG	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	73
Eco52I	CGGCCG	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	420
Esp3I	CGTCTC	2 cut(s)	115, 160
FaiI	YATR	1 cut(s)	444
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FauI	CCCGC	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	94, 410
Fsp4HI	GCNGC	2 cut(s)	94, 410
FspBI	CTAG	1 cut(s)	454
GlaI	GCGC	2 cut(s)	97, 319
GluI	GCNGC	2 cut(s)	94, 410
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	2 cut(s)	288, 413
HhaI	GCGC	2 cut(s)	98, 320
Hin1I	GRCGYC	1 cut(s)	153
Hin6I	GCGC	2 cut(s)	96, 318
HinP1I	GCGC	2 cut(s)	96, 318
HinfI	GANTC	5 cut(s)	44, 104, 191, 238, 284
HpaII	CCGG	2 cut(s)	288, 413
Hpy166II	GTNNAC	3 cut(s)	211, 246, 397
Hpy188I	TCNGA	6 cut(s)	56, 103, 196, 237, 368, 426
Hpy188III	TCNNGA	3 cut(s)	122, 277, 288
Hpy8I	GTNNAC	3 cut(s)	211, 246, 397
Hpy99I	CGWCG	6 cut(s)	128, 131, 155, 185, 200, 203
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	3 cut(s)	129, 153, 201
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 143, 173
HpySE526I	ACGT	3 cut(s)	129, 153, 201
Hsp92I	GRCGYC	1 cut(s)	153
HspAI	GCGC	2 cut(s)	96, 318
Kpn2I	TCCGGA	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	48, 56, 298, 312
LmnI	GCTCC	1 cut(s)	371
LpnPI	CCDG	5 cut(s)	191, 301, 320, 426, 446
MaeI	CTAG	1 cut(s)	454
MaeII	ACGT	3 cut(s)	129, 153, 201
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	4 cut(s)	50, 58, 300, 314
MboI	GATC	4 cut(s)	48, 56, 298, 312
MboII	GAAGA	5 cut(s)	40, 107, 110, 247, 250
MflI	RGATCY	1 cut(s)	56
MluCI	AATT	2 cut(s)	390, 420
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	6 cut(s)	31, 86, 92, 224, 349, 362
MroI	TCCGGA	1 cut(s)	287
MroXI	GAANNNNTTC	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	2 cut(s)	288, 413
MvnI	CGCG	3 cut(s)	96, 150, 320
MwoI	GCNNNNNNNGC	3 cut(s)	93, 143, 173
NdeII	GATC	4 cut(s)	48, 56, 298, 312
PcsI	WCGNNNNNNNCGW	4 cut(s)	23, 186, 195, 351
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	5 cut(s)	44, 104, 191, 238, 284
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	95, 411
PpuMI	RGGWCCY	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	73
PspPPI	RGGWCCY	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	56
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	278
SatI	GCNGC	2 cut(s)	94, 410
Sau3AI	GATC	4 cut(s)	48, 56, 298, 312
Sau96I	GGNCC	1 cut(s)	73
SetI	ASST	9 cut(s)	12, 42, 75, 132, 156, 204, 210, 216, 390
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	390, 420
SsiI	CCGC	4 cut(s)	85, 94, 148, 410
SspMI	CTAG	1 cut(s)	454
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	3 cut(s)	132, 156, 204
TaqI	TCGA	9 cut(s)	47, 66, 123, 183, 189, 225, 329, 345, 354
TaqII	GACCGA	1 cut(s)	315
TasI	AATT	2 cut(s)	390, 420
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	2 cut(s)	96, 412
TfiI	GAWTC	5 cut(s)	44, 104, 191, 238, 284
TscAI	CASTG	1 cut(s)	27
TspDTI	ATGAA	2 cut(s)	331, 392
TspGWI	ACGGA	2 cut(s)	97, 231
TspRI	CASTG	1 cut(s)	27
Tth111I	GACNNNGTC	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	1 cut(s)	454
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.