Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007967

Physical Location & Seq

Genomic Coordinates Reverse (-)

9029758 .. 9030894

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCGTATAATTCTTACGCCGAGATGAGTTATCTTCTGAAGACGTTAACGACGAAGGAAGAGATTGATCGGGTTATCAGAGACACCATTGATGAAGTTCTTGTTTTACGATTTGGTCGTTCCTCCGACGCCGTTTGTCTTCAGCATGATGAAATCCTTGCGAAATCGGTGAGAGATGTTTCGAAATTTGCTAAGGTAGCTTTGGTTGATGTTGATTCAGAGGATGTTCAAGTGTATGTGAAGTATTTTGATATCACGTTGTTTCCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATACCGCCAGAGAGGATACCAAAGTACCAGCTCGTGTACAAGGATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DIM1

Protein Analysis

159

Amino Acids

18.32

Weight (kDa)

5.93

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIM1	PF02966	12 - 145	7e-52	Mitosis protein DIM1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24730
fragaria_vesca	FvH4_3g25760 FvH4_3g25760 FvH4_3g25760
malus_domestica	MD11G1172800.v1.1
prunus_persica	Prupe.2G099400_v2.0.a1 Prupe.2G099400_v2.0.a1
pyrus_communis	pycom03g10700
rosa_chinensis	RchiOBHm_Chr5g0046911 RchiOBHm_Chr5g0047331
rosa_laevigata	RLG00000034455 RLG00000034491
rosa_multiflora	Rmu_sc0011420.1_g000006 Rmu_sc0012847.1_g000004
rosa_roxburghii	Rroxscaffold_1G00034480
rosa_rugosa	Rorug05G0233000 Rorug05G0233000 Rorug05G0233000 Rorug05G0233100 Rorug05G0236000
rosa_samantha	Rh5AG312100 Rh5BG321100 Rh5DG331700
rosa_wichuraiana	Rw5G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	291
AciI	CCGC	2 cut(s)	320, 434
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	2 cut(s)	59, 125
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	455, 467
AgsI	TTSAA	3 cut(s)	230, 286, 422
AluBI	AGCT	2 cut(s)	200, 460
AluI	AGCT	2 cut(s)	200, 460
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	181
AsuII	TTCGAA	1 cut(s)	182
BaeI	ACNNNNGTAYC	4 cut(s)	437, 437, 470, 470
BauI	CACGAG	1 cut(s)	461
BbsI	GAAGAC	2 cut(s)	47, 131
BceAI	ACGGC	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	438
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	2 cut(s)	47, 131
Bpu10I	CCTNAGC	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	405
BseGI	GGATG	2 cut(s)	229, 478
BseMI	GCAATG	1 cut(s)	405
BseRI	GAGGAG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	3 cut(s)	67, 273, 322
BspACI	CCGC	2 cut(s)	320, 434
BspPI	GGATC	1 cut(s)	330
BspT104I	TTCGAA	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	405
BsrGI	TGTACA	1 cut(s)	465
BssMI	GATC	3 cut(s)	67, 273, 322
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	461
Bst2BI	CACGAG	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	129
BstAUI	TGTACA	1 cut(s)	465
BstBI	TTCGAA	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	229, 478
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	3 cut(s)	70, 276, 325
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	3 cut(s)	67, 273, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstV2I	GAAGAC	2 cut(s)	47, 131
BsuI	GTATCC	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	229, 478
CfoI	GCGC	1 cut(s)	292
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	454, 466
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	3 cut(s)	200, 383, 460
CviKI_1	RGCY	3 cut(s)	200, 383, 460
CviQI	GTAC	2 cut(s)	454, 466
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	3 cut(s)	69, 275, 324
DpnII	GATC	3 cut(s)	67, 273, 322
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco32I	GATATC	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	59, 125
EcoRV	GATATC	1 cut(s)	253
FaeI	CATG	1 cut(s)	149
FatI	CATG	1 cut(s)	145
FauNDI	CATATG	1 cut(s)	297
FokI	GGATG	1 cut(s)	236
FspAI	RTGCGCAY	1 cut(s)	291
FspI	TGCGCA	1 cut(s)	291
GlaI	GCGC	1 cut(s)	291
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	292
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	2 cut(s)	215, 308
HpaI	GTTAAC	1 cut(s)	48
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	48, 466
Hpy188I	TCNGA	4 cut(s)	39, 80, 127, 220
Hpy188III	TCNNGA	1 cut(s)	312
Hpy8I	GTNNAC	2 cut(s)	48, 466
Hpy99I	CGWCG	3 cut(s)	55, 131, 274
HpyAV	CCTTC	2 cut(s)	49, 276
HpyCH4IV	ACGT	2 cut(s)	44, 257
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	2 cut(s)	44, 257
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	290
KspAI	GTTAAC	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	67, 273, 322
LmnI	GCTCC	1 cut(s)	395
LpnPI	CCDG	3 cut(s)	297, 450, 470
LweI	GCATC	1 cut(s)	301
MaeII	ACGT	2 cut(s)	44, 257
MalI	GATC	3 cut(s)	69, 275, 324
MboI	GATC	3 cut(s)	67, 273, 322
MboII	GAAGA	8 cut(s)	26, 52, 71, 131, 268, 271, 274, 421
MluCI	AATT	3 cut(s)	10, 185, 302
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	133, 214, 373, 386, 435
MseI	TTAA	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeI	CATATG	1 cut(s)	297
NdeII	GATC	3 cut(s)	67, 273, 322
NlaIII	CATG	1 cut(s)	149
NmeAIII	GCCGAG	1 cut(s)	46
NsbI	TGCGCA	1 cut(s)	291
NspV	TTCGAA	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 115
PfeI	GAWTC	2 cut(s)	215, 308
RsaI	GTAC	2 cut(s)	455, 467
RsaNI	GTAC	2 cut(s)	454, 466
SaqAI	TTAA	1 cut(s)	47
Sau3AI	GATC	3 cut(s)	67, 273, 322
SetI	ASST	5 cut(s)	47, 198, 202, 260, 462
SfaNI	GCATC	1 cut(s)	301
SfuI	TTCGAA	1 cut(s)	182
Sse9I	AATT	3 cut(s)	10, 185, 302
SsiI	CCGC	2 cut(s)	320, 434
TaiI	ACGT	2 cut(s)	47, 260
TaqI	TCGA	3 cut(s)	182, 269, 391
TasI	AATT	3 cut(s)	10, 185, 302
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	2 cut(s)	215, 308
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TspDTI	ATGAA	5 cut(s)	108, 165, 314, 338, 416
XapI	RAATTY	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.