Rorug05G0233000

Thioredoxin-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
24279958 .. 24283358
3401 bp
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UTR
Exon/CDS
Intron
Rorug05G0233000.1

Sequence Viewer

Length: 270 bp
ATGGCAGGAATGACTTTAGGCTTTAGGTACATTCAAAGGCTGGTGGACCAATTCCCTCCTGTAAAAGCGTTTCATTTTGCCCTTGACCACACTAAGTGTGGATTAGAGAAGCTTGGTGGAGCAGAACAAGGTGAATTTCATCCACCCACGTCGCGAATGACCAATTATGTTGTGTTTAAATTCGGAGAGCTTACTAGGTCTTACAATGTCTTACTATCTTGGCTATCTGGGCTTCACTTCAGAATGCAGTGGTATTTCATGACTTCATGA

Protein Analysis

89

Amino Acids

10.37

Weight (kDa)

9.3

Isoelectric Point (pI)

15.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 154
AcsI RAATTY 2 cut(s) 134, 179
AcuI CTGAAG 1 cut(s) 223
AdeI CACNNNGTG 1 cut(s) 96
AfaI GTAC 1 cut(s) 29
AgsI TTSAA 1 cut(s) 35
AjiI CACGTC 1 cut(s) 150
AluBI AGCT 2 cut(s) 112, 190
AluI AGCT 2 cut(s) 112, 190
ApoI RAATTY 2 cut(s) 134, 179
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 46
BfaI CTAG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 46
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 46
BseGI GGATG 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 154
BsmI GAATGC 1 cut(s) 249
Bsp68I TCGCGA 1 cut(s) 154
BspFNI CGCG 1 cut(s) 154
BspHI TCATGA 2 cut(s) 258, 266
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 139
BstFNI CGCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstUI CGCG 1 cut(s) 154
BtrI CACGTC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 254
BtuMI TCGCGA 1 cut(s) 154
CciI TCATGA 2 cut(s) 258, 266
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 28
CviAII CATG 2 cut(s) 259, 267
CviJI RGCY 6 cut(s) 21, 40, 112, 190, 223, 232
CviKI_1 RGCY 6 cut(s) 21, 40, 112, 190, 223, 232
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 1 cut(s) 93
DraI TTTAAA 1 cut(s) 178
DraIII CACNNNGTG 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 223
FaeI CATG 2 cut(s) 262, 270
FaiI YATR 3 cut(s) 168, 260, 268
FatI CATG 2 cut(s) 258, 266
FokI GGATG 1 cut(s) 126
FspBI CTAG 1 cut(s) 195
Hin1II CATG 2 cut(s) 262, 270
HindIII AAGCTT 1 cut(s) 110
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 185, 242
Hpy188III TCNNGA 3 cut(s) 153, 259, 267
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 2 cut(s) 262, 270
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 26, 72, 213
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 149
MluCI AATT 4 cut(s) 50, 134, 163, 179
MnlI CCTC 1 cut(s) 66
MseI TTAA 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 249
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 229
NlaIII CATG 2 cut(s) 262, 270
NruI TCGCGA 1 cut(s) 154
PagI TCATGA 2 cut(s) 258, 266
PctI GAATGC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 46
RruI TCGCGA 1 cut(s) 154
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 46
SetI ASST 6 cut(s) 29, 114, 133, 152, 192, 200
SinI GGWCC 1 cut(s) 46
Sse9I AATT 4 cut(s) 50, 134, 163, 179
SspMI CTAG 1 cut(s) 195
TaiI ACGT 1 cut(s) 152
TasI AATT 4 cut(s) 50, 134, 163, 179
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 254
TspDTI ATGAA 4 cut(s) 62, 128, 247, 255
TspRI CASTG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 2 cut(s) 134, 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.