Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007967

Physical Location & Seq

Genomic Coordinates Forward (+)

15525421 .. 15526451

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G099400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCTCCTGATCTCTCTGTTTTCTGAATTGCAACCTTTCCCTTTCTTTTCAAACTTCTGTTATCGAATTGCTTCACTGCGTTTAAATCTGTGCCTCCAGGGGAGGAAGATGAGCTACCTATTGACGACGCTGACGAAGAAGCAAGAGGTGGATTCTCTCATTAGATCTACCATCGACAAAGTCCTCGTCCTCCGCTTCGGCCGAGCTTCCGATTCCGTCTGCCTCCTCCTCGACGACATCCTCGACAAAACGGCGCGAGAGGTCTCAAAGTTCGCAGCAATTGCGCTCGTCGATATCGATTCTGAGGACATTCAAGTCTACGCCAAATACTTCGACATCACTCTGATTCCATCGACGGTGTTCTTCTTCAATGCCCACCACATGAAGATGGACTCGGGAACAGCGGATCACACCAAATGGGTCGGTGCGTTTCAGCAAAAACAGGACTTCATTGATGTCGTGGAGGCGATTTTTAGAGGAGCTATGAAAGGGAAGCTGATCGTGAGCTGCCCGTTGCCGCCGGAACGAATTCCCAAATATCAGTTGCTGTACAAAGATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DIM1

Protein Analysis

188

Amino Acids

21.38

Weight (kDa)

8.3

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24730
fragaria_vesca	FvH4_3g25760 FvH4_3g25760 FvH4_3g25760
malus_domestica	MD11G1172800.v1.1
prunus_persica	Prupe.2G099400_v2.0.a1 Prupe.2G099400_v2.0.a1
pyrus_communis	pycom03g10700
rosa_chinensis	RchiOBHm_Chr5g0046911 RchiOBHm_Chr5g0047331
rosa_laevigata	RLG00000034455 RLG00000034491
rosa_multiflora	Rmu_sc0011420.1_g000006 Rmu_sc0012847.1_g000004
rosa_roxburghii	Rroxscaffold_1G00034480
rosa_rugosa	Rorug05G0233000 Rorug05G0233000 Rorug05G0233000 Rorug05G0233100 Rorug05G0236000
rosa_samantha	Rh5AG312100 Rh5BG321100 Rh5DG331700
rosa_wichuraiana	Rw5G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	1 cut(s)	256
AciI	CCGC	3 cut(s)	193, 404, 518
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	528
AfaI	GTAC	1 cut(s)	551
AgsI	TTSAA	3 cut(s)	51, 314, 370
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	5 cut(s)	114, 206, 482, 496, 507
AluI	AGCT	5 cut(s)	114, 206, 482, 496, 507
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	414
AlwNI	CAGNNNCTG	1 cut(s)	547
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	275, 507
ApoI	RAATTY	1 cut(s)	528
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
Asp700I	GAANNNNTTC	2 cut(s)	70, 528
AspLEI	GCGC	2 cut(s)	256, 286
AvaI	CYCGRG	1 cut(s)	394
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BbvI	GCAGC	2 cut(s)	287, 494
BccI	CCATC	3 cut(s)	179, 358, 382
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	268
BglII	AGATCT	1 cut(s)	164
BisI	GCNGC	3 cut(s)	276, 508, 518
BlsI	GCNGC	3 cut(s)	277, 509, 519
Bme1390I	CCNGG	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	98
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	3 cut(s)	215, 218, 492
BseX3I	CGGCCG	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	287, 494
Bsh1236I	CGCG	1 cut(s)	256
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	1 cut(s)	201
BshVI	ATCGAT	1 cut(s)	297
BsiEI	CGRYCG	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	521
BsmAI	GTCTC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	268
BsoBI	CYCGRG	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	4 cut(s)	9, 164, 406, 498
BspACI	CCGC	3 cut(s)	193, 404, 518
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	295
BspDI	ATCGAT	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	414
BspTNI	GGTCTC	1 cut(s)	268
BsrGI	TGTACA	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	4 cut(s)	9, 164, 406, 498
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	358
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	549
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	237
BstFNI	CGCG	1 cut(s)	256
BstHHI	GCGC	2 cut(s)	256, 286
BstKTI	GATC	4 cut(s)	12, 167, 409, 501
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	4 cut(s)	9, 164, 406, 498
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	287, 494
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BstZI	CGGCCG	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
CaiI	CAGNNNCTG	1 cut(s)	547
CfoI	GCGC	2 cut(s)	256, 286
ClaI	ATCGAT	1 cut(s)	297
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	6 cut(s)	114, 201, 206, 482, 496, 507
CviKI_1	RGCY	6 cut(s)	114, 201, 206, 482, 496, 507
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	4 cut(s)	11, 166, 408, 500
DpnII	GATC	4 cut(s)	9, 164, 406, 498
DraI	TTTAAA	1 cut(s)	84
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	1 cut(s)	199
EagI	CGGCCG	1 cut(s)	199
EclXI	CGGCCG	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	268
Eco32I	GATATC	1 cut(s)	295
Eco52I	CGGCCG	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	394
EcoRI	GAATTC	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	96
EcoRV	GATATC	1 cut(s)	295
FaeI	CATG	1 cut(s)	385
FaiI	YATR	2 cut(s)	383, 485
FatI	CATG	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	276, 508, 518
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	3 cut(s)	276, 508, 518
GlaI	GCGC	2 cut(s)	255, 285
GluI	GCNGC	3 cut(s)	276, 508, 518
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	521
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	2 cut(s)	256, 286
Hin1II	CATG	1 cut(s)	385
Hin6I	GCGC	2 cut(s)	254, 284
HinP1I	GCGC	2 cut(s)	254, 284
HinfI	GANTC	5 cut(s)	152, 212, 299, 346, 392
HpaII	CCGG	1 cut(s)	521
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	25, 211, 304, 345
Hpy188III	TCNNGA	3 cut(s)	7, 396, 502
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	4 cut(s)	130, 236, 293, 358
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	385
HspAI	GCGC	2 cut(s)	254, 284
Kzo9I	GATC	4 cut(s)	9, 164, 406, 498
LmnI	GCTCC	2 cut(s)	9, 479
LpnPI	CCDG	5 cut(s)	20, 83, 110, 428, 534
Lsp1109I	GCAGC	2 cut(s)	287, 494
MalI	GATC	4 cut(s)	11, 166, 408, 500
MboI	GATC	4 cut(s)	9, 164, 406, 498
MboII	GAAGA	5 cut(s)	118, 148, 355, 358, 397
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	1 cut(s)	164
MluCI	AATT	4 cut(s)	26, 66, 279, 528
MlyI	GAGTC	1 cut(s)	386
MroXI	GAANNNNTTC	2 cut(s)	70, 528
MseI	TTAA	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	4 cut(s)	9, 164, 406, 498
NlaIII	CATG	1 cut(s)	385
NmeAIII	GCCGAG	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	3 cut(s)	131, 240, 294
PdmI	GAANNNNTTC	2 cut(s)	70, 528
PfeI	GAWTC	4 cut(s)	152, 212, 299, 346
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	277, 509, 519
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	164
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	3 cut(s)	276, 508, 518
Sau3AI	GATC	4 cut(s)	9, 164, 406, 498
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	9 cut(s)	37, 116, 120, 150, 208, 264, 484, 498, 509
SmiMI	CAYNNNNRTG	1 cut(s)	386
Sse9I	AATT	4 cut(s)	26, 66, 279, 528
SsiI	CCGC	3 cut(s)	193, 404, 518
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	8 cut(s)	64, 174, 231, 243, 291, 297, 333, 353
TasI	AATT	4 cut(s)	26, 66, 279, 528
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	4 cut(s)	152, 212, 299, 346
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	2 cut(s)	275, 507
TspDTI	ATGAA	3 cut(s)	398, 439, 500
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	1 cut(s)	81
Tth111I	GACNNNGTC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	528
XmiI	GTMKAC	1 cut(s)	318
XmnI	GAANNNNTTC	2 cut(s)	70, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.