Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015925

Physical Location & Seq

Genomic Coordinates Reverse (-)

50023761 .. 50025272

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00034440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCGACAAGCTTCGCAACCGCTTCGACCATCGTAGGCCTCGGAAGCTCGCTCTCGTCCAAGAGGACATGCCTCTCTTCAGACTTTGTGAAGCCGGTCATGGTTAGGAGCCGTCTGAGCCAAGCAAAAGCTTCTGGAGGAAGGTTCACCTGCTTCCAGAGTGATTGGCTGAGGAGGGATCTGAATGTGATCGGGTTCGGGTTGATCGGATGGTTAGTGCCATCGAGCGTTCCGGCGATCGACGGCAAGAGTTTGACCGGGCTTTTCTTTGACAGCATTGGAACTGAGCTCGCTCACTTCCCCACACCTCCAGCTCTCACTTCCCAGTTCTGGTTGTGGTTGATCTGCTGGCACTTGGGGCTTTTCATCACCCTTACTTTTGGGCAGATTGGCTTCAAGGGAAGGACCGACAAGTACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009521 GO:0009522 GO:0009536 GO:0009579 GO:0009765 GO:0009767 GO:0009768 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0032991 GO:0034357 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044425 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.35

Weight (kDa)

9.73

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsaO_TMD	PF22832	52 - 140	2.3e-43	PsaO transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08380
fragaria_vesca	FvH4_3g25770
malus_domestica	MD03G1150500.v1.1 MD11G1169900.v1.1
prunus_persica	Prupe.6G137400_v2.0.a1
pyrus_communis	pycom03g10460 pycom11g14230
rosa_chinensis	RchiOBHm_Chr5g0046981
rosa_laevigata	RLG00000034456
rosa_multiflora	Rmu_sc0005544.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034440
rosa_rugosa	Rorug05G0233100
rosa_samantha	Rh5BG321400 Rh5CG347500
rosa_wichuraiana	Rw5G029190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	158
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	397
AluBI	AGCT	5 cut(s)	12, 48, 131, 289, 314
AluI	AGCT	5 cut(s)	12, 48, 131, 289, 314
Alw21I	GWGCWC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	405
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	2 cut(s)	139, 361
AvaII	GGWCC	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	170
BccI	CCATC	3 cut(s)	38, 204, 229
BceAI	ACGGC	2 cut(s)	96, 259
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BcnI	CCSGG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	158
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	259
BmrI	ACTGGG	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	319
BpmI	CTGGAG	2 cut(s)	156, 294
Bpu10I	CCTNAGC	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMII	CTCAG	3 cut(s)	107, 161, 276
BseNI	ACTGG	1 cut(s)	325
BseRI	GAGGAG	1 cut(s)	187
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	95, 233, 258
BslI	CCNNNNNNNGG	1 cut(s)	330
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	5 cut(s)	178, 189, 204, 237, 342
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	3 cut(s)	108, 162, 277
BspLI	GGNNCC	1 cut(s)	110
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	5 cut(s)	178, 189, 204, 237, 342
Bst6I	CTCTTC	1 cut(s)	82
BstC8I	GCNNGC	3 cut(s)	50, 291, 350
BstDEI	CTNAG	3 cut(s)	116, 170, 285
BstF5I	GGATG	1 cut(s)	215
BstKTI	GATC	5 cut(s)	181, 192, 207, 240, 345
BstMBI	GATC	5 cut(s)	178, 189, 204, 237, 342
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 117, 358
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	215
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	3 cut(s)	50, 291, 350
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	2 cut(s)	69, 100
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	3 cut(s)	116, 170, 285
DpnI	GATC	5 cut(s)	180, 191, 206, 239, 344
DpnII	GATC	5 cut(s)	178, 189, 204, 237, 342
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	291
FaeI	CATG	2 cut(s)	72, 103
FaiI	YATR	2 cut(s)	70, 101
FatI	CATG	2 cut(s)	68, 99
FokI	GGATG	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	291
GsuI	CTGGAG	2 cut(s)	156, 294
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	3 cut(s)	95, 233, 258
Hin1II	CATG	2 cut(s)	72, 103
HindIII	AAGCTT	2 cut(s)	10, 129
HpaII	CCGG	3 cut(s)	95, 233, 258
HphI	GGTGA	2 cut(s)	139, 361
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	5 cut(s)	44, 82, 117, 183, 209
Hpy188III	TCNNGA	2 cut(s)	135, 157
Hpy8I	GTNNAC	1 cut(s)	147
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	135, 396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 117, 358
HpyF3I	CTNAG	3 cut(s)	116, 170, 285
Hsp92II	CATG	2 cut(s)	72, 103
Kzo9I	GATC	5 cut(s)	178, 189, 204, 237, 342
LmnI	GCTCC	1 cut(s)	108
MalI	GATC	5 cut(s)	180, 191, 206, 239, 344
MboI	GATC	5 cut(s)	178, 189, 204, 237, 342
MboII	GAAGA	1 cut(s)	69
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	291
MnlI	CCTC	7 cut(s)	50, 57, 83, 131, 165, 168, 318
MspI	CCGG	3 cut(s)	95, 233, 258
MspR9I	CCNGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	3 cut(s)	45, 117, 358
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	5 cut(s)	178, 189, 204, 237, 342
NlaIII	CATG	2 cut(s)	72, 103
NlaIV	GGNNCC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	72
PaqCI	CACCTGC	1 cut(s)	158
PceI	AGGCCT	1 cut(s)	39
Ple19I	CGATCG	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	178
PvuI	CGATCG	1 cut(s)	240
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SacI	GAGCTC	1 cut(s)	291
Sau3AI	GATC	5 cut(s)	178, 189, 204, 237, 342
Sau96I	GGNCC	1 cut(s)	405
ScaI	AGTACT	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	8 cut(s)	14, 50, 133, 146, 152, 291, 310, 316
SinI	GGWCC	1 cut(s)	405
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	21
SstI	GAGCTC	1 cut(s)	291
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	257
TaqI	TCGA	3 cut(s)	26, 224, 240
TaqII	GACCGA	1 cut(s)	422
TatI	WGTACW	1 cut(s)	414
TspDTI	ATGAA	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	405
XceI	RCATGY	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.